KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:51 2014 Check: 00 .. Name: ENSP00000303279/1-1012 Len: 1025 Check: 7922 Weight: 1.00 Name: ENSBTAP00000053447/1-922 Len: 1025 Check: 8397 Weight: 1.00 Name: ENSTTRP00000012362/1-1011 Len: 1025 Check: 2667 Weight: 1.00 Name: bmy_17005T0/1-998 Len: 1025 Check: 7375 Weight: 1.00 Name: BACU004032/1-136 Len: 1025 Check: 4881 Weight: 1.00 // 1 50 ENSP00000303279/1-1012 MRWGLRPRGP GAAALATARS LWGTPRLPCS PGWQGATKRL LVRSVSGASN ENSBTAP00000053447/1-922 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012362/1-1011 MRCGLRPRGP GAAALAVARN LWVPPRLPRR PGWRGETRRL LVRSVTGASN bmy_17005T0/1-998 MRWGLRPRGP GAGALAVARN LWVPPRLPRR PGWRGATRRL LVRSVTGASN BACU004032/1-136 MRWGLRPRGP GAAALAVARN LWVPPCLPRR PGWRGATRRL LVRSVTGASN 51 100 ENSP00000303279/1-1012 HQPNSNSGRY RDTVLLPQTS FPMKLLGRQQ PDTELEIQQK C-GFSELYSW ENSBTAP00000053447/1-922 ---------- ---------- ---------- ---------- --XFSELYSW ENSTTRP00000012362/1-1011 QLQNSSNGSY RDTVLLPQTS FPMKLLGRQQ PDTELEVQQX XHGFLELYSW bmy_17005T0/1-998 QLQNSSNGSY RDTVLLPQTS FPMKLLGRQQ PDTELEVQQK C-GFLELYSW BACU004032/1-136 QLQNSSNGSY RDTVLLPQTS FPMKLLGRQQ PDTELEVQQK C-GFLELYSW 101 150 ENSP00000303279/1-1012 QRERKVKTEF CLHDGPPYAN GDPHVGHALN KILKDIANRF HMMNGSKIHF ENSBTAP00000053447/1-922 QRERKVKAEF CF-DGPPYAN GDPHVGHALN KILKDIANRY HMMRGSKIHF ENSTTRP00000012362/1-1011 QRERKVKTEF CLHDGPPYAN GDPHVGHALN KILKDIANRY HMMRGSKIHF bmy_17005T0/1-998 QRERKVKTEF CLHDGPPYAN GDPHVGHALN KILKDIANRY HMMRGSKIHF BACU004032/1-136 QRERKVKTEF CLHDGPPYAN GDPHVGHALN ---------- ---------- 151 200 ENSP00000303279/1-1012 VPGWDCHGLP IEIKVLSELG REAQNLSAME IRKKARSFAK AAIEKQKSAF ENSBTAP00000053447/1-922 VPGWDCHGLP IEIKVLSELG GKAQNLSAME IREKARSFAK AAIEKQKLSF ENSTTRP00000012362/1-1011 VPGWDCHGLP IEIKVLSELG GKAQNLSAME IREKXXXXXX XXXXXXXXXX bmy_17005T0/1-998 VPGWDCHGLP IEIKVLSELG GKAQNLSAME IREKARSFAK AAIEKQKSAF BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000303279/1-1012 IRWGIMADWN NCYYTFDGKY EAKQLRTFYQ MYDKGLVYRS YKPVFWSPSS ENSBTAP00000053447/1-922 IRWGIMADWN NCYYTFDGRY EAKQLRIFYQ MYDKGLIYRS YKPVFWSPSS ENSTTRP00000012362/1-1011 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17005T0/1-998 IRWGIMADWN NCYYTFDGRY EARQLRIFYE MYDKGLIYRS YKPVFWSPSS BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000303279/1-1012 RTALAEAELE YNPEHVSRSI YVKFPLLKPS PKLASLIDGS SPVSILVWTT ENSBTAP00000053447/1-922 RTALAEAELE YNPEHISRSV YVKFPLLKPS PKLASLLDGS SPVSFLVWTT ENSTTRP00000012362/1-1011 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGS SPVS-LVWTT bmy_17005T0/1-998 RTALAEAELE YNPEHVSCSV YVKFPLLKPS PKLASLIDGS SPVSFLVWTT BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000303279/1-1012 QPWTIPANEA VCYMPESKYA VVKCSKSGDL YVLAADKVAS VASTLETTFE ENSBTAP00000053447/1-922 QPWTIPANQA VCYMPESKYA VVKCSSSGDL YILGADKVTS VASTLGTTFE ENSTTRP00000012362/1-1011 Q-WTIPANQA VCYMPESKYA VVKCSKSGDF YVLAADKVTS VASTLETTFE bmy_17005T0/1-998 QPWTIPANQA VCYMPESKYA VVKCXKSGDF YLLAADKVTS VASTLETTFE BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000303279/1-1012 TISTLS---- ------GVDL ENGTCSHPLI PDKASPLLPA NHVTMAKGTG ENSBTAP00000053447/1-922 VISTFS---- ------GVDL ENGSCAHPLI SERESPLLPA NHVTMTKGTG ENSTTRP00000012362/1-1011 VISTFS---- ------GVDL ENGTCAHPFI SERVSPLLPA SHVTMTKGTG bmy_17005T0/1-998 VISTFSGRDL QLSFPTGVDL ENGTCAHPFI SERVSPLLPA NHVTMTKGTG BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000303279/1-1012 LVHTAPAHGM EDYGVASQHN LPMDCLVDED GVFTDVAGPE LQNKAVLEEG ENSBTAP00000053447/1-922 LVHTAPAHGM EDYSVAAQHN LSTDCLVNED GVFTDAAGPE LQNKAVLKEG ENSTTRP00000012362/1-1011 LVHTAPAHGM EDYSVASQHN LSMDCLVNED GVFTDAAGPE LQNKAVLEEG bmy_17005T0/1-998 LVHTAPAHGM EDYSVASQHN LSMDCLVNED GVFTDAAGPE LQNKAVLEEG BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000303279/1-1012 TDVVIKMLQT AKNLLKEEKL VHSYPYDWRT KKPVVIRASK QWFINITDIK ENSBTAP00000053447/1-922 TDAVIMMLQA AKNLLKEEKL VHSYPYDWRT KKPVVIRASK QWFVNITDIK ENSTTRP00000012362/1-1011 TDAVIKMLQA AKNLLKEEKL VHSYPYDWRT KKPVVIRASK QWFVNITDIK bmy_17005T0/1-998 TDAVIKMLQA AKNLLKEEKL VHSYPYDWRT KKPVVIRASK QWFVNITDIK BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000303279/1-1012 TAAKELLKKV KFIPGSALNG MVEMMDRRPY WCISRQRVWG VPIPVFHHKT ENSBTAP00000053447/1-922 TTAKELLKKV KFIPGSALNA MVEMMDRRPY WCISRQRVWG VPIPVFHHKT ENSTTRP00000012362/1-1011 TTAKELFKKV KFIPGSALNA MVEMMDRRPY WCISRQRVWG VPIPVFHHKT bmy_17005T0/1-998 TTAKELLKKV KFIPGSALNA MVEMMDRRPY WCISRQRVWG VPIPVFHHKT BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000303279/1-1012 KDEYLINSQT TEHIVKLVEQ HGSDIWWTLP PEQLLPKEVL SEVGGPDALE ENSBTAP00000053447/1-922 KDDVLINSQT IEHIIQLVEE HGSDIWWTLP PEQLLPKEVL SQVGGPDALE ENSTTRP00000012362/1-1011 KDEFLINSQT IEHIIKLVEE HGSDIWWTLP PEQLLPKEVL SQVGGPDALE bmy_17005T0/1-998 KDEFLINSQT IEHIIKLVEE HGSDIWWTLP PEQLLPKEVL SQVGGPDALE BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000303279/1-1012 YVPGQDILDI WFDSGTSWSY VLPGPDQRAD LYLEGKDQLG GWFQSSLLTS ENSBTAP00000053447/1-922 YVPGQDILDI WFDSGTSWSN VLPGTDQRAD LYLEGKDQLG GWFQSSLLTS ENSTTRP00000012362/1-1011 YVPGQDILDI WFDSGTSWSY VLPGTDQRAD LYMEGKDQLG GWFQSSLLTS bmy_17005T0/1-998 YVPGQDILDI WFDSGTSWSY VLPGTDQRAD LYLEGKDQLG GWFQSSLLTS BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000303279/1-1012 VAARKRAPYK TVIVHGFTLG EKGEKMSKSL GNVIHPDVVV NGGQ--DQSK ENSBTAP00000053447/1-922 VAARNKSPFK TVVVHGFTLG EKGEKMSKSL GNIIDPDVVI NGGQEKDHSK ENSTTRP00000012362/1-1011 VAARNKSPFK TVVVHGFTLG EKGEKMSKSL GNVIDPDVVI NGGQ--DQSK bmy_17005T0/1-998 VAARNKSPFK TVVVHGFTLG EKGEKMSKSL GNVIDPDVVI NGGQ--DQSK BACU004032/1-136 ---------- ---------- ---------- ---------- ---------K 701 750 ENSP00000303279/1-1012 EPPYGADVLR WWVADSNVFT EVAIGPSVLN AARDDISKLR NTLRFLLGNV ENSBTAP00000053447/1-922 EPPYGADVLR WWVAESNVFT EVTISPSLLN AARDDISKLR NTLRFLLGNV ENSTTRP00000012362/1-1011 EPPYGADVLR WWVAESNVFT EVIISPSVLN AARDDISKLR NTLRFLLGNV bmy_17005T0/1-998 EPPYGADVLR WWVAESNVFT EVIISPSVLN AARDDISKLR NTLRFLLGNV BACU004032/1-136 RPNYAA---- ---------- ---------- ---------- ---------- 751 800 ENSP00000303279/1-1012 ADFNPETDSI PVNDMYVIDQ YMLHLLQDLA NKITELYKQY DFGKVVRLLR ENSBTAP00000053447/1-922 AGFNPETDSI PVNSMYVIDQ YMLHLLQDLA NKINDSYKQY DFGKVVRLLQ ENSTTRP00000012362/1-1011 AGFNPETDSI PVNNMYFIDQ YMLHLLQDLA NKITDAYKQY DFGKVVRLLR bmy_17005T0/1-998 AGFNPETDSV PVNNMYVIDQ YMLHLLQDLA NKCCQPLSK- ---------- BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000303279/1-1012 TFYTRELSNF YFSIIKDRLY CEKENDPKRR SCQTALVEIL DVIVRSFAPI ENSBTAP00000053447/1-922 AFYTRELSNF YFSIIKDRLY CENADDPKRR SCQTALAEIL DVMVRSFAPI ENSTTRP00000012362/1-1011 AFYTRELSNF YFSIIKDRLY CENADDPKRR SCQTALAEIL DVMVRSFAPI bmy_17005T0/1-998 ---------- ---LFLNRLY CENADDPKRR SCQTALAEIL DVMVRSFAPI BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000303279/1-1012 LPHLAEEVFQ HIPYIKEPKS VFRTGWISTS SIWKKPGLEE AVESACAMRD ENSBTAP00000053447/1-922 LPHLAEEVFQ HIPYIKEPKS VFRTGWIKTS SIWKKPGLEE AIESACAMRD ENSTTRP00000012362/1-1011 LPHLAEEVFQ YVPYIKEPKS VFRTGWIRTS SIWKKPGLEE AIESACAMRD bmy_17005T0/1-998 LPHLAEEVFQ YIPYIKEPKS VFRTGWIRTS SVWKKPGLEE AVESACAMRD BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000303279/1-1012 SFLGSIPGKN AAEYKVITVI EPGLLFEIIE MLQSEETSST SQLNELMMAS ENSBTAP00000053447/1-922 SFLGSIPGKN AAEYEVIIVI EPGLLFEIME MLQAEETSST SQLNELMMAS ENSTTRP00000012362/1-1011 SFLGSIPGRN AAEYEVIIVI EPGLLFEIIE MLQAEETSST SQLNELMMAS bmy_17005T0/1-998 SFLGSIPGRN AAEYEVIIVI EPGLLFEIIE MLQAEETSST SQLNELMMAS BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000303279/1-1012 ESTLLAQEPR EMTADVIELK GKFLINLEGG DIREESSYKV IVMPTTKEKC ENSBTAP00000053447/1-922 QTTLLSQEPR GISEDVTELK GTFLINLEGG DIREESSYKV IVMTTTKEKC ENSTTRP00000012362/1-1011 QTTLLSQEPR AVTADVTELK GTFLINLEGG DIREESSYKV IVMPTTKEKC bmy_17005T0/1-998 QTTLLSQEPR AVAADVTELK GTFLINLEGG DIREESSYKV IVMPTTKEKC BACU004032/1-136 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000303279/1-1012 PRCWKYTAES SDTLCPRCAE VVSGK ENSBTAP00000053447/1-922 PRCWKYTAES SDTLCPRCAE VVKGK ENSTTRP00000012362/1-1011 PRCWKYTAES SDTLCPRCTG VVRGK bmy_17005T0/1-998 PRCWKYTAES SDTLCPRCAE VVRGK BACU004032/1-136 ---------- ---------- -----