KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:04:52 2014 Check: 00 .. Name: ENSBTAP00000053450/1-1125 Len: 1182 Check: 2558 Weight: 1.00 Name: ENSTTRP00000009926/1-1157 Len: 1182 Check: 1876 Weight: 1.00 Name: bmy_15230T0/1-980 Len: 1182 Check: 6117 Weight: 1.00 Name: BACU008434/1-1139 Len: 1182 Check: 728 Weight: 1.00 // 1 50 ENSBTAP00000053450/1-1125 M--------- ---------- ---------- ---------- -------NSP ENSTTRP00000009926/1-1157 RHSGP---GL LSRPSVCYRL SLLTSPQLHP LPSQPPTPAS CGPRAGMNSP bmy_15230T0/1-980 M--------- ---------- ---------- ---------- -------AAR BACU008434/1-1139 MLLVPKAQGL VEMLQTIYE- ---------- ---------- -------TES 51 100 ENSBTAP00000053450/1-1125 TES-DGMPGR EPALEILPRT PLHGIPVTVE VKPVLPGAMP SSMGGGGGGS ENSTTRP00000009926/1-1157 TESADGMPGR EPSLEILPRT PLHGLPVAVE VKPVLPGAMP SSMGGGGGGS bmy_15230T0/1-980 ARWGLGWP-T EPFLSLLP-- -------AVE VKPVLPGAMP SSMGGGGGGS BACU008434/1-1139 CFSADGMPGR EPSLEILPRT PLHGLPVAVE VKPVLPGAMP SSIGGGGGGS 101 150 ENSBTAP00000053450/1-1125 PSPVELRGAL AGPVDPTLRE QQLQQELLAL KQQQQLQKQL LFAEFQKQHD ENSTTRP00000009926/1-1157 PSPVELRGAL AGPVDPALRE QQLQQELLAL KQQQQLQKQL LFAEFQKQHD bmy_15230T0/1-980 PSPVELRGAL AGPVDPALRE QQLQQELLAL KQQQQLQKQL LFAEFQKQHD BACU008434/1-1139 PSPVELRGAL AGPVDPALRE QQLQQELLAL KQQQQLQKQL LFAEFQKQHD 151 200 ENSBTAP00000053450/1-1125 HLTRQHEVQL QKHLKVSVGA RAPRQQQEML AAKRQQELEQ QRQREQQRQE ENSTTRP00000009926/1-1157 HLTRQHEVQL QKHLK----- ----QQQEML AAKRQQELEQ QRQREQQRQE bmy_15230T0/1-980 HLTRQHE--- ---------- ---------- ---------- ---------- BACU008434/1-1139 HLTRQHEVQL QKHLK----- -PLQQQQEML AAKRQQELEQ QRQREQQRQE 201 250 ENSBTAP00000053450/1-1125 ELEKQRLEQQ LLILRNKEKS KESAIASTEV KLRLQEFLLS KSKEPTPGGL ENSTTRP00000009926/1-1157 ELEKQRLEQQ LLILRNKEKS KESAIASTEV KLRLQEFLLS KSKEPTPGGL bmy_15230T0/1-980 ---------- ---------- ---------- ---------- -SKEPTPGGL BACU008434/1-1139 ELEKQRLEQQ LLILRNKEKS KESAIASTEV KLRLQEFLLS KSKEPTPGGL 251 300 ENSBTAP00000053450/1-1125 NHSLPQHPKC WGTHHASLDQ SSPPQSGPPG TPSSYKLPLL GPYDSRDDFP ENSTTRP00000009926/1-1157 NHSLPQHPKC WGAHHASLDQ SSPPQSGPPG TPPSYKLPLL GPYDSRDDFP bmy_15230T0/1-980 NHSLPQHPKC WGAHHASLDQ SSPPQSGPPG TPPSYKLPLL GPYDSRDDFP BACU008434/1-1139 NHSLPQHPKC WGAHHASLDQ SSPPQSGPPG TPPSYKLPLL GPYDSRDDFP 301 350 ENSBTAP00000053450/1-1125 LRKTASEPNL KVRSRLKQKV AERRSSPLLR RKDGTVISTF KKRAVEITGA ENSTTRP00000009926/1-1157 LRKTASEPNL KVRSRLKQKV AERRSSPLLR RKDGTVISTF KKRAVEITGA bmy_15230T0/1-980 LRKTASEPNL KVRSRLKQKV AERRSSPLLR RKDGTVISTF KKRAVEITGA BACU008434/1-1139 LRKTASEPNL KVRSRLKQKV AERRSSPLLR RKDGTVISTF KKRAVEITGA 351 400 ENSBTAP00000053450/1-1125 GPGVSAVCNS APGSGPSSPN SSHSTIAENG FTGSVPNIPT EMLPQHRALP ENSTTRP00000009926/1-1157 GPGAAAVCNS APGSGPSSPN SSHSTIAENG FTGSVPNIPT EMLPQHRALP bmy_15230T0/1-980 GPGAAAVCNS APGSGPSSPN SSHSTIAENG FTGSVPNIPT EMLPQHRALP BACU008434/1-1139 GPG--AVCNS APGSGPSSPN SSHSTIAENG FTGSVPNIPT EMLPQHRALP 401 450 ENSBTAP00000053450/1-1125 PDTSPNQFSL YTSPSLPNIS LGLQATVTVT NSHLTASPKL STQQEAERQA ENSTTRP00000009926/1-1157 LDSSPNQFSL YTSPSLPNIS IGLQATVTVT NSHLTASPKL LTQQEAERQA bmy_15230T0/1-980 LDSSPNQFSL YTSPSLPNIS LGLQATVTVT NSHLTASPKL STQQEAERQA BACU008434/1-1139 LDSSPNQFSL YTSPSLPNIS LGLQATVTVT NSHLTASPKL STQQEAERQA 451 500 ENSBTAP00000053450/1-1125 LQSLRQGGAL TGKFMSTSSI PGCLLGVALE GDSSPHGHAS LLQHVLLLEQ ENSTTRP00000009926/1-1157 LQSLRQGGAL TGKFMSTSSI PGCLLGVALE GDTSPHGHAS LLQHVLLLEQ bmy_15230T0/1-980 LQSLRQGGAL TGKFMSTSSI PGCLLGVALE GDTSPHGHAS LLQHVLLLEQ BACU008434/1-1139 LQSLRQGGAL TGKFMSTSSI PGCLLGVALE GDTSPHGHAS LLQHVLLLEQ 501 550 ENSBTAP00000053450/1-1125 ARQQSTLIAV PLHGQSPLVT GERVATSMRT VGKLPRHRPL SRTQSSPLPQ ENSTTRP00000009926/1-1157 ARQQSTLIAV PLHGQSPLVT GERVATSMRT VGKLPRHRPL SRTQSSPLPQ bmy_15230T0/1-980 ARQQSTLIAV PLHGQSPLVT GERVATSMRT VGKLPRHRPL SRTQSSPLPQ BACU008434/1-1139 ARQQSTLIAV PLHGQSPLVT GERVATSMRT VGKLPRHRPL SRTQSSPLPQ 551 600 ENSBTAP00000053450/1-1125 SPQALQQLVM QQQHQQFLEK QKQQQLQLGK ILTKTGELPR QPTTHPEETE ENSTTRP00000009926/1-1157 SPQALQQLVM QQQHQQFLEK QKQQQLQLGK ILTKTGELPR QPTTHPEETE bmy_15230T0/1-980 SPQALQQLVM QQQHQQFLEK QKQQQLQLGK ILTKTGELPR QPTTHPEETE BACU008434/1-1139 SPQALQQLVM QQQHQQFLEK QKQQQLQLGK ILTKTGELPR QPTTHPEETE 601 650 ENSBTAP00000053450/1-1125 EELTEQQDAL LGEGALTIPR EGSTESESTQ EDLEEEEEEE VVEEEE---E ENSTTRP00000009926/1-1157 EELTEQQEAF LGEGALAIPR EGSTESESTQ EDLEEEEEGG GGEEEE---- bmy_15230T0/1-980 EELTEQQEAF LGEGALTIPR EGSTESESTQ EDLEEEEEEE EEEEEE---- BACU008434/1-1139 EELTEQQEAF LGEGALTIPR EGSRESESTQ EDLEEEEEEE EEEEEEEEEE 651 700 ENSBTAP00000053450/1-1125 EEDCIQVKDE ERESGAEEGP DLEESSAGYK KAFADTQQLQ PLQVYQAPLS ENSTTRP00000009926/1-1157 --DCIQVKDE EGESGAEEGP DLEESSAGYK KVFADAQQLQ PLQVYQAPLS bmy_15230T0/1-980 ---------- ------EEGP DLEESSAGYK KVFADAQQLQ PLQVYQAPLS BACU008434/1-1139 EEDCIQVKDE EGESGAEEGP DLEESSAGYK KVFADAQQLQ PLQVYQAPLS 701 750 ENSBTAP00000053450/1-1125 LATVPHQALG RTQSSPAAPG GMKSPPDQPT KHLFTTGVVY DTFMLKHQCM ENSTTRP00000009926/1-1157 LATVPHQALG RTQSSPAAPG GMKSPPDQPT KHLFTTGVVY DTFMLKHQCM bmy_15230T0/1-980 LATVPHQALG RTQSSPAAPG GMKSPPDQPT KHLFTTGVVY DTFMLKHQCM BACU008434/1-1139 LATVPHQALG RTQSSPAAPG GMKSPPDQPT KHLFTTGVVY DTFMLKHQCM 751 800 ENSBTAP00000053450/1-1125 CGNTHVHPEH AGRIQSIWSR LQETGLLSKC ERIRGRKATL DEIQTVHSEY ENSTTRP00000009926/1-1157 CGNTHVHPEH AGRIQSIWSR LQETGLLSKC ERIRGRKATL DEIQTVHSEY bmy_15230T0/1-980 CGNTHVHPEH AGRIQSIWSR LQETGLLSKC ERIRGRKATL DEIQTVHSEY BACU008434/1-1139 CGNTHVHPEH AGRIQSIWSR LQETGLLSKC ERIRGRKATL DEIQTVHSEY 801 850 ENSBTAP00000053450/1-1125 HTLLYGTSPL NRQKLDSKKL LGPISQKMYA MLPCGGIGVD SDTVWNEMHS ENSTTRP00000009926/1-1157 HTLLYGTSPL NRQKLDSKKL LGPISQKMYA MLPCGGIGVD SDTVWNEMHS bmy_15230T0/1-980 HTLLYGTSPL NRQKLDSKKL LGPISQKMYA MLPCGGIGVD SDTVWNEMHS BACU008434/1-1139 HTLLYGTSPL NRQKLDSKKL LGPISQKMYA MLPCGGIGVD SDTVWNEMHS 851 900 ENSBTAP00000053450/1-1125 SSAVRMAVGC LVELAFKVAA GELKNGFAII RPPGHHAEES TAMGFCFFNS ENSTTRP00000009926/1-1157 SSAVRMAVGC LVELAFKVAT GELKNGFAII RPPGHHAEES TAMGFCFFNS bmy_15230T0/1-980 SSAVRMAVGC LVELAFKVAT GELKNGFAII RPPGHHAEES TAMGFCFFNS BACU008434/1-1139 SSAVRMAVGC LVELAFKVAT GELKNGFAII RPPGHHAEES TAMGFCFFNS 901 950 ENSBTAP00000053450/1-1125 VAITTKLLQQ KLNVGKVLIV DWDIHHGNGT QQAFYNDPSV LYISLHRYDN ENSTTRP00000009926/1-1157 VAITTKLLQQ KLNVGKVLIV DWDIHHGNGT QQAFYNDPSV LYISLHRYDN bmy_15230T0/1-980 VAITTKLLQQ KLSVGKVLIV DWDIHHGNGT QQAFYNDPSV LYISLHRYDN BACU008434/1-1139 VAITTKLLQQ KLNVGKVLIV DWDIHHGNGT QQAFYNDPSV LYISLHRYDN 951 1000 ENSBTAP00000053450/1-1125 GNFFPGSGAP EE-------V GGGPGVGYNV NVAWTGGVDP PIGDVEYLTA ENSTTRP00000009926/1-1157 GNFFPGSGAP EE-------V GGGPGVGYNV NVAWTGGVDP PIGDVEYLTA bmy_15230T0/1-980 GNFFPGSGAP EEVQLLGSNV GGGPGVGYNV NVAWTGGVDP PIGDVEYLTA BACU008434/1-1139 GNFFPGSGAP EE-------V GGGPGVGYNV NVAWTGGVDP PIGDVEYLTA 1001 1050 ENSBTAP00000053450/1-1125 FRTVVMPIAH EFSPDVVLVS AGFDAVEGHL SPLGGYSVTA RCFGHLTRQL ENSTTRP00000009926/1-1157 FRTVVMPIAH EFSPDVVLVS AGFDAVEGHL SPLGGYSVTA RCFGHLTRQL bmy_15230T0/1-980 FRTVVMPIAH EFSPDVVLVS AGFDAVEGHL SPLGGYSVTA RC-------- BACU008434/1-1139 FRTVVMPIAH EFSPDVVLVS AGFDAVEGHL SPLGGYSVTA RCFGHLTRQL 1051 1100 ENSBTAP00000053450/1-1125 MTLAGGRVVL ALEGGHDLTA ICDASEACVS ALLSVELQPL DEAVLQQKPN ENSTTRP00000009926/1-1157 MTLAGGRVVL ALEGGHDLTA ICDASEACVS ALLSVELQPL DEAVLQQKPN bmy_15230T0/1-980 ---------- ---------- ---------- ----EPLQPL DEAVLQQKPN BACU008434/1-1139 MTLAGGRVVL ALEGGHDLTA ICDASEACVS ALLSVELQPL DEAVLQQKPN 1101 1150 ENSBTAP00000053450/1-1125 INAVATLEKV IEIQSKHWSC VQRFAAGLGR SLREAQAGET EEAETVSAMA ENSTTRP00000009926/1-1157 VNAVATLEKV IEIQSKHWSC VQRFAAGLGR SLREAQAGET EEAETVSAMA bmy_15230T0/1-980 VNAVATLEKV IEIQSKHWSC VQRFAAGLGR SLREAQAGET EEAETVSAMA BACU008434/1-1139 VNAVATLEKV IEIQSKHWSC VQRFAAGLGR SLREAQAGET EEAETVSAMA 1151 1200 ENSBTAP00000053450/1-1125 LLSVGAEQAQ AAAAREHSPR PAEEPMEQEP AL ENSTTRP00000009926/1-1157 LLSVGAEQAQ AAAGREHSPR PAEEPMEQEP AL bmy_15230T0/1-980 LLSVGAEQAQ AAAGREHSPR PAEEPMEQEP AL BACU008434/1-1139 LLSVGAEQAQ AAAGREHSPR PAEEPMEQEP AL