KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:04:58 2014 Check: 00 .. Name: bmy_14008T0/1-397 Len: 403 Check: 7008 Weight: 1.00 Name: ENSBTAP00000053467/1-261 Len: 403 Check: 219 Weight: 1.00 Name: BACU008287/1-285 Len: 403 Check: 3139 Weight: 1.00 Name: ENSTTRP00000002268/1-260 Len: 403 Check: 7774 Weight: 1.00 // 1 50 bmy_14008T0/1-397 MRKRDPGSAP SLGDRVPYVI ISAAKGVAAY MKSE-GPQPL IPSRAPVCVV ENSBTAP00000053467/1-261 ---------- -------MLT LEAAQLDGPH FSCL------ ---------- BACU008287/1-285 ---------- -------MLT LEAAQLDGPH FSCLAGKTGG IHLYLPQLLQ ENSTTRP00000002268/1-260 ---------- -------MLT LEAAQLDGPH FSCL------ ---------- 51 100 bmy_14008T0/1-397 RPPRPLCPQD PLFVLEHSLP IDTQYYLEQQ LAKPLLRIFE PILGEGRAEA ENSBTAP00000053467/1-261 ------YPDG VFYDLDSC-- ---------- ---------- ---------- BACU008287/1-285 CHNRVSYPDG VFYDLDSC-- ---------- ---------- ---------- ENSTTRP00000002268/1-260 ------YPDG VFYDLDSC-- ---------- ---------- ---------- 101 150 bmy_14008T0/1-397 VLLRTAGGQP GQAGVPGWGS GEGAETAALA AALSSATRTL VHFLEWGGPP ENSBTAP00000053467/1-261 ----KHSSYP DSEGAP---- ---------- ---------- ---------- BACU008287/1-285 ----KHSSYP DSDGAP---- ---------- ---------- ---------- ENSTTRP00000002268/1-260 ----KHSSYP DSDGAPG--- ---------- ---------- ---------- 151 200 bmy_14008T0/1-397 PPPPGRQDWG NSSTPSPAAT MSQPCIDLWS YGLSPAVPAA SYETFDPAVA ENSBTAP00000053467/1-261 ---------- ---------- ------DLWS YGLSPAVPGA SYETFDPAVA BACU008287/1-285 ---------- ---------- ------DLWS YGLSPAVPAA SYETFDPAVA ENSTTRP00000002268/1-260 ---------- ---------- --------WS YGLSPAVPAA SYETFDPAVA 201 250 bmy_14008T0/1-397 TFGHTQGVQL CYGPSTYSPG PGRSQGTKAE GVREGGPPPG TTGNP--DLP ENSBTAP00000053467/1-261 TFGQPQGVQL CYGPSTYSP- ----VGSLDP APSLEAPGPG FPAYPTEDFP BACU008287/1-285 TFGHTQGVQL CYGPSTYSP- ----VGNLDP APSLEAPGPG FPAYPMEDFT ENSTTRP00000002268/1-260 TFSHTQGVQL CYGPSTYSP- ----VGNLDP APSLEAPGPG FPAYPMEDFT 251 300 bmy_14008T0/1-397 -QTLGPLAYA PYPSPVLSEE EDLLLDSPAL EVSDSESDEA LMAGPEGRGS ENSBTAP00000053467/1-261 SQTLGPPAYA PYPSPVLSEE EDLLLDSPAL EVSDSESDEV LVAGPEGRGS BACU008287/1-285 SQTLGPLAYA PYPSPVLSEE EDLLLDSPAL EVSDSESDEA LMAGPEGRGS ENSTTRP00000002268/1-260 SQTLGPLAYA PYPSPVLSEE EDLLLDSPAL EVSDSESDEA LMAGPEGRGS 301 350 bmy_14008T0/1-397 E--AGARKKL RLYQFLLGLL TRGDMRECVW WVEPGAGVFQ FSSKHKELLA ENSBTAP00000053467/1-261 E--AGARKKL RLYQFLLGLL TRGDMRECVW WVEPGAGVFQ FSSKHKELLA BACU008287/1-285 EAAAGARKKL RLYQFLLGLL TRGDMRECVW WVEPGAGVFQ FSSKHKELLA ENSTTRP00000002268/1-260 E--AGARKKL RLYQFLLGLL TRGDMRECVW WVEPGAGVFQ FSSKHKELLA 351 400 bmy_14008T0/1-397 RRWGQQKGNR KRMTYQKLAR ALRNYAKTGE IRKVKRKLTY QFDSALLPAA ENSBTAP00000053467/1-261 RRWGQQKGNR KRMTYQKLAR ALRNYAKTGE IRKVKRKLTY QFDSALLPAA BACU008287/1-285 RRWGQQKGNR KRMTYQKLAR ALRNYAKTGE IRKVKRKLTY QFDSALLPAA ENSTTRP00000002268/1-260 RRWGQQKGNR KRMTYQKLAR ALRNYAKTGE IRKVKRKLTY QFDSALLPAA 401 450 bmy_14008T0/1-397 RRA ENSBTAP00000053467/1-261 RRA BACU008287/1-285 RRA ENSTTRP00000002268/1-260 RRA