KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:00 2014 Check: 00 .. Name: ENSP00000363405/1-1444 Len: 1581 Check: 96 Weight: 1.00 Name: ENSBTAP00000053472/1-1446 Len: 1581 Check: 9687 Weight: 1.00 Name: ENSTTRP00000013622/1-1504 Len: 1581 Check: 3024 Weight: 1.00 Name: bmy_12595T0/1-755 Len: 1581 Check: 6434 Weight: 1.00 Name: BACU007337/1-928 Len: 1581 Check: 6975 Weight: 1.00 // 1 50 ENSP00000363405/1-1444 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053472/1-1446 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013622/1-1504 MFPAFKYCAI DYSYENVVRK KFCRDALLLR IPSCLYQDEN YPARITDNKF bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000363405/1-1444 ---------- ----MTDTSV LDQWKASFFV EDFLEK---K TITRMVTQIN ENSBTAP00000053472/1-1446 ---------- ----ETDISV LDQWKASLTV DDFLEK---K TVTGMVTQLN ENSTTRP00000013622/1-1504 RKPWTRVSAV SVSEMTEISL LDQWKASLFV EEFPAK---K TVTGMMTELS bmy_12595T0/1-755 ---------- ----METEQP EETFPNTGTN GEFGKRPAED MEAEQAFKRS BACU007337/1-928 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000363405/1-1444 CEFEEVVPSS NPDSQIEVEE VSLYTHMDYN EVFTPVSCLE KCSALQNQNQ ENSBTAP00000053472/1-1446 CEFDEIVPSS NPNSQTEVEE ASLYTHKEYN EFFTLVSCLE KRPSLQAQVS ENSTTRP00000013622/1-1504 CEFEEIVPSS NPDSQTEVEE ASLYNHKDYN EFFTLVNCLE ECPLLQAQKQ bmy_12595T0/1-755 RNTDEMVELR ILLQSKNPGE VIGKGGKNIK ALXTDYNASV SVPDSSGPER BACU007337/1-928 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000363405/1-1444 DLFIDDKGIL FVSS----RK HLPTLPTLLS RLKLFLVKDP LLDFKGQIFT ENSBTAP00000053472/1-1446 DLSIDEEI-V FVNYLTAYKS QLPTLHTLLS RLKLFLVKDP LPDFKAQIPT ENSTTRP00000013622/1-1504 DLYIDDEEII FVNNLMTYRS QLPTSHTLLS RLKLFLVKDP LLDFKGQMFT bmy_12595T0/1-755 TLSISADIET IGEILKKIIP TLEEGLQL-- ---------P SPTATSQLSL BACU007337/1-928 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000363405/1-1444 EANFSRECFS LQETLEAFVK EDFCMDKVNF CQEKLEDTIC LNEP-SSFLI ENSBTAP00000053472/1-1446 EAKFFRECFS LQGDVKCLVE EDFYMDKEDF CQEKLKDTVG LNEAVSSTLL ENSTTRP00000013622/1-1504 EADFFRECFS FQGDMKGFV- EDFYMDKENF CQEKLEDTVG LNEA--SVFP bmy_12595T0/1-755 ESDAV-ECLN YQ-------- --HYKGSNFD CELRL----- ---------- BACU007337/1-928 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000363405/1-1444 EYEFLIPPSL KPEIDIPSLS ELKELLNPVP EIINYVDEKE KLFERDLTNK ENSBTAP00000053472/1-1446 ECELLVPISH KQEVDIPSLS ELKESLNLMP EIINYADENE NLSKTDLTIK ENSTTRP00000013622/1-1504 ECEFLISASL KQEVDIPSLS ELKESLNLMP EMINYVDENE KLFRRDLTIK bmy_12595T0/1-755 ----LIHQSL AGGIIGVKGA KIKELRENTQ TTIKLFQECC PRSTDRVILI BACU007337/1-928 ---------- ---------- ---------- ---------- ---------M 301 350 ENSP00000363405/1-1444 HGIEDIGDIK FSSTEILTIQ SQSEPEECSK PGELEMPLTP LFLTCQHSSV ENSBTAP00000053472/1-1446 HGVDL-EDIK CSSIEIMAIQ NQYE-TEYSQ PEELEMPLTR LDPTNHHSSV ENSTTRP00000013622/1-1504 HGIYI-EDIK CSSTEILAIQ SQCE-SEYKE PVELEMPLTH LHLTNQHSSV bmy_12595T0/1-755 GGKPD-RVVE CIKIILDLIS ESPI-KGXAQ PYDPNFYDET YDYGGFTMMF BACU007337/1-928 EGS------- ---------- ---------- ---------- ---------- 351 400 ENSP00000363405/1-1444 NSLRTELQTF PLSPVCKINL LTAEESANEY YMMWQLERCR SPLNPFLLTV ENSBTAP00000053472/1-1446 NSLCAELQTF PSSPVCKINL LTAEESANKY HMLWQSESCR SSLNSFLIRV ENSTTRP00000013622/1-1504 NSLCAELQKF PSSPACKISL LIAEESANKY CMVWQSESCR SSLNTFLFRV bmy_12595T0/1-755 DDRRGRPVGF P------ITL LIAEESANKY CMVWQSESCR SSLNPFLFRV BACU007337/1-928 ---------- ---------- ---------- ---------- --------RM 401 450 ENSP00000363405/1-1444 PRIQEPHSQY SVTDLKKIFS VKEESLVINL EKAEWWKQAG LNLKMMETLE ENSBTAP00000053472/1-1446 PRIEEPNNQY SLTDLKKIFS VEEEKLVVNP VNAEWWKEAR LNL--TETLE ENSTTRP00000013622/1-1504 PRTGEPNSLY SVVDFKKIFS IEEESLVVNP ENAEWWKQAG LNLIMTETLE bmy_12595T0/1-755 PRTEEPNSLY SVADFKKVFS IEEESLVVNP ENAEWWKQAG LNLIMTETLE BACU007337/1-928 PRTEEPNSLY SVADFKKIFS IEEESLVVNP ENAEWWKQAG LNLIMTETLE 451 500 ENSP00000363405/1-1444 HLNTYLCHDN LSSNDTKIEI FLPTKVLQLE SCLEHKSHSS PIALIDEKST ENSBTAP00000053472/1-1446 PLSTYLCHNN LSSDDTKLET FLPTNVPQLE PWLEHEDCSS PLILINEQST ENSTTRP00000013622/1-1504 HLSTYLYH-N LSSDDSKLET FLPTNVLQLK SWLEHKSCSS PIKLI-EIST bmy_12595T0/1-755 HLSTYLYRNN LSSDDSKLET FLPTNVLQLE SWLEHKSCSS PIKLI-EIST BACU007337/1-928 HLSTYLHHNN LSSDDSKLET FLPTNVLQLE SWLEHKSCSS PIKLI-EIST 501 550 ENSP00000363405/1-1444 NAHLSLPQKS PSLAKEVPDL CFSDDYFSDK GAAKEEKPKN DQEPVNRIIQ ENSBTAP00000053472/1-1446 NDHLSPPQKT PSPTKEVSDL HLSDEYVSVE RPRKEEKPKN DLELGYGIIQ ENSTTRP00000013622/1-1504 NDHLSPSQKT PPLSKAVTDS YFSDEYVAVE RPRKEEKPKI DLELGYRIIR bmy_12595T0/1-755 NDHLSPSQKT PPLAKEVTDS YFSDEYVAVE RPRKEEKPKN DLELGYRIIR BACU007337/1-928 NDHLSPSQKT PPLAKEVTDL YFSDEYVAVE RPRNEEKPKN DLELGYRIIR 551 600 ENSP00000363405/1-1444 KKENNDHFEL DCTGPSIKSP SSSIIKKASF EHGKKQENDL DLLSDFIMLR ENSBTAP00000053472/1-1446 NKENKDHLEL DSTVPSTESS SSSKIEKASF KHGKKWENNL DLLSDFIMLR ENSTTRP00000013622/1-1504 TKENEDYLEL DSTVPSTESS SSSKIQEASF KHGKKQENNL DLLNDFIMLR bmy_12595T0/1-755 TKENKDYLEL DSTVPSTESS SSSKIEEASF KHAKKQENNL DLLNDFIMLR BACU007337/1-928 TKENKDYLEL DSTVPSTESS SSSKIEEASF KRGKKQENNL DLLNDFIMLR 601 650 ENSP00000363405/1-1444 NKYKTCTSKT EVTNSDEKH- ---------- -----DKEAC SLTLQEESPI ENSBTAP00000053472/1-1446 NKYPTCTSKT EVTD-DGKD- ---------- --ELQNEEEV SLTLQEERPI ENSTTRP00000013622/1-1504 NKYKTCTSKT EVTDNDGKD- ---------- -----DKEEH SLTLQEENPI bmy_12595T0/1-755 NKYKTCTSKT EVTDSDGKDG DFPEQCKLIF LLELQDKEER SLTLQEENPI BACU007337/1-928 NKYKTCTSMT EVTDSDGKD- ---------- --ELQDKEER SLSLQEENPI 651 700 ENSP00000363405/1-1444 VHINKTLEEI NQERGTDSVI EIQASDSQCQ AFCLLEAAAS PILKNLVSLC ENSBTAP00000053472/1-1446 VCNNKTLEKT NQERRADNVI EIPASDSQCQ AYSLLEAAAS PILEKLVCLC ENSTTRP00000013622/1-1504 VCTNETLEKA NQERRADNVI EIQASDSQCQ AYCLLEAAAS PILKKLVCLC bmy_12595T0/1-755 VCTNKTLEKA NQERRADNVI EIQASDSQCQ AYCLLEAAAS PILKKLVCLC BACU007337/1-928 VCTNKTLEKA NQERRADNVI EIQASDSQCQ AYCLLEAAAS PILKKLVCLC 701 750 ENSP00000363405/1-1444 TLPTANWKFA TVIFDQTRFL LKEQEKVVSD AVRQGTIDER EMTFKHAAL- ENSBTAP00000053472/1-1446 TLPAANWKFA TVSFDQTRFL LKEQEKIISD AIYQGKNEER EMTFKYAAL- ENSTTRP00000013622/1-1504 TLPAANWKFD TVIFDQTRFL LKQQEKVISD AIHQGKNVER EMTFKYAAL- bmy_12595T0/1-755 TLPAANWKFD TVIFDQTRFL LKEQEKVISD AIHQVTEEER SMWVWLPTLD BACU007337/1-928 TLPAATWKFD TVIFDQTRFL LKEQEKVISD AIHQ------ ---------- 751 800 ENSP00000363405/1-1444 ---------- ---------- --LHLLVTIR DVLLTCSLDT ALGYLSKAKD ENSBTAP00000053472/1-1446 ---------- ---------- --LHLLVTIR DVLLTCNLDT ALGYLSNAKD ENSTTRP00000013622/1-1504 ---------- ---------- --LHLLVTIR DVLLTCSLDT ALGYLSNAKD bmy_12595T0/1-755 PEFCIFSQLP ICFFSQTSKV FTMQFLKEQK DMLFFPLLFL T-GYLSNAKD BACU007337/1-928 ---------- ---------- ---------- ---------- --GYLSNAKD 801 850 ENSP00000363405/1-1444 IYNSILGPYL GDIWRQLEIV QFIRGKKPET NYKIQELQCQ ILSWMQSQQQ ENSBTAP00000053472/1-1446 IYKSVFGSCL YDIWRQLEIV QFIRGKKPEI NYKIRELQCQ ILNWMQNEQQ ENSTTRP00000013622/1-1504 IYKSILGSYL DDIWRQLEIV QFIREKKPET SYKIQELQCQ ILNWMQSGQQ bmy_12595T0/1-755 IYRSILGSYL DDIWRQLEIV QFIREKKPET NYKIQELQCQ ILNWMQSGQQ BACU007337/1-928 IYRSILGSYL DDIWRQLEIV QFIREKKPET NYKIQELQCQ ILNWMQSGQQ 851 900 ENSP00000363405/1-1444 IK-------- ---------- ----VLIIIR MDSDGEKHFL IKILNKIEGL ENSBTAP00000053472/1-1446 IK-------- ---------- ----VLVIIR MDSDGEKHLL IKILNKIEGL ENSTTRP00000013622/1-1504 IK-------- ---------- ----VLIIIR MDSDGEKHLL IKILNEIEGL bmy_12595T0/1-755 IK-------- ---------- ---------- ---------- ---------- BACU007337/1-928 IKQKNMKKNN HSDIHVYEIL IFEQVLIIIR MDSDGEKHLL IKTLNKIEG- 901 950 ENSP00000363405/1-1444 TLTVLHSNER KDFLESEGVL RGTSSCVVVH NQYIGADFPW SNFSFVVEYN ENSBTAP00000053472/1-1446 TLIVLHSNKR KDFLESEGVL NSTSFCVVAP NQYIGADFPW SNFSFVVEYN ENSTTRP00000013622/1-1504 TLTVLHSN-K KDFLESKGVL NGTSFCAVVH NQYIGADFPW SNFSFVVEYN bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000363405/1-1444 YVEDSCWTKH CKELNIPYMA FKVILPDTVL ERSTLLDRFG GFLLEIQIPY ENSBTAP00000053472/1-1446 FVENSCWTEH CEKLNIPYMA FKVILPDTVL KRSSLLDSFG GFLLEIQIPY ENSTTRP00000013622/1-1504 FVENSCWAEH CEKLNIPYLA FKVILPDTVL KRSTLLDSFG GFLLEIQIPY bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 ---------- ---------- ---------- --SNLLDSFG GFLLEIQIPY 1001 1050 ENSP00000363405/1-1444 VFFASEGLLN TPDILQLLES NYNISLVERG CSESLKLFGS SECYVVVTID ENSBTAP00000053472/1-1446 MFFASEGLLN TPEILQLLES NYNITLVERC CSESLKLFGG TEHYVVMTID ENSTTRP00000013622/1-1504 VFFASEGLLN TPEILQLLET KYNITLVERC CSESLKLFGG TEHYVVVTID bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 VFFASEGLLN TPEILQLLES KYNITLVERC CSESLKLFGG TEHYVVVTID 1051 1100 ENSP00000363405/1-1444 EHTAIILQDL EELNYEKASD NIIMRLMALS LQYRYCWIIL YTKETLNSEY ENSBTAP00000053472/1-1446 EHSAVILQDL EELNCEKASD NIIMRLMALS FQYSYCWIIL YAKKPLNSEY ENSTTRP00000013622/1-1504 EDTTIILQDL EELNCEKASD NIIMRLMALS FQYSYCWIIL YAKKPLNSEY bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 ENTTIILQDL EELNCEKASD NIIMRLMALS FQYSYCWIIL YAKKPLNSEY 1101 1150 ENSP00000363405/1-1444 LLTEKTLHHL ALIYAALVSF GLNSEELDVK LIIAPGVEAT ALIIRQIADH ENSBTAP00000053472/1-1446 HLTEKTLHHL ALIYAALVSS GLKSEELDVK LIIAPGVEET ALMIRQIADH ENSTTRP00000013622/1-1504 CLTE-TLHHL ALIYAALVSS GLKSEELDVK XXXXXXXXXX XXXXXXXXXH bmy_12595T0/1-755 ---------- -------VST GIKQ------ ---------- ---------- BACU007337/1-928 YLTEKTLHHL ALIYAALVSS GLKSEELDV- ---------- ---------- 1151 1200 ENSP00000363405/1-1444 SLMTSKRDPH EWLDKSWLKV SPSEEEMYLL DFPCINPLVA QLMLNKGPSL ENSBTAP00000053472/1-1446 NLMTSKRDPH EWLDKSWLKV APSKEEMYLL DFPSVTPLVA QLMLNKGPSL ENSTTRP00000013622/1-1504 NLMTSKRDPH EWLDKSWLEI SPSKEEMYLL DFPSVNPLVA QLMLNKGPSL bmy_12595T0/1-755 ---------- ---------- ---------- --------IT AISLYK---- BACU007337/1-928 ---------- ---------- ---KEEMYLL DFPSVNPLVA QLMLNKGPSL 1201 1250 ENSP00000363405/1-1444 HWILLATLCQ LQELLPEVPE KVLKHFCSIT SLFKIGSSSI TKSPQISSPQ ENSBTAP00000053472/1-1446 NWILLATLCQ LQELLPEVPE KVLKHFCGIT SLFKI-SPSI TESPQISSPQ ENSTTRP00000013622/1-1504 NWILLATLCQ LQELLPEVPE KVLKHFCDIT SLFKI-SPSV TKSPQISSPQ bmy_12595T0/1-755 NWM------- ---------- ---------- ---------- ---------- BACU007337/1-928 NWILLATLCQ LRELLPEVPE KVLKHFCDIT SLFKI-SPSV TKSPQISSPQ 1251 1300 ENSP00000363405/1-1444 ENRNQISTLS SQSSAS-DLD SVIQEHNEYY QYLGLGETVQ EDKTTILNDN ENSBTAP00000053472/1-1446 ENRDQTRNFT SQSSASGSSD SVIQEHIN-Y QYSDLGETVH EDTNSTSNYT ENSTTRP00000013622/1-1504 ENRNQTSAFT SQTSASGSSD SVIQEHNEYY QYSDLGETVH EDTNATSNYN bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 ENRNQTSAFT SQSSASGSSD SVIQEHNEYY QYSDLGETVH EDTNTASNYN 1301 1350 ENSP00000363405/1-1444 SSIMELKEIS SFLPPVTSYN QTSYWKDSSC KSNIGQNTPF LINIESRRPA ENSBTAP00000053472/1-1446 SSLMELKEMP GILPSVSSYN QTSHWKESSC NPNTVQNNSV LTNMEARNVS ENSTTRP00000013622/1-1504 SSLMKLKEMP CILPPVTSYN QTSYWKLSSC NPNIMQNNSF LTNIEARNVS bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 SSLMKLKEMP CILPPVTSYN QTSYWKESSC NLNIVQNNSF LTNTEARNVS 1351 1400 ENSP00000363405/1-1444 YNSFLNHSDS ESDVFSLGLT QMNCETIKSP TDTQKRVSVV PRFINSQKRR ENSBTAP00000053472/1-1446 GNSFLNQNDS ESDVFSLGLT EMNYETIISP INTQKRVT-- PHFINYQKKG ENSTTRP00000013622/1-1504 GSSFLNQNDS ESDVFSLGLT GMNCETMISP IDTQKRVT-- PNFINYQKKE bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 GNSFLNQNDS ESDVFSLGLT AMNCETMISP IDTQKRVT-- PNFINYQKKG 1401 1450 ENSP00000363405/1-1444 THEAKGFINK DVSDPIFSLE GTQSPLHWNF KKNIWEQENH PFNLQYGAQQ ENSBTAP00000053472/1-1446 THEKKGPIKK ELSAPVFSLE GSQPPLHWNF KRNVWEQQNH SFNLQSGAEQ ENSTTRP00000013622/1-1504 THEAKGPTNK ELSAPVFSLE SSQSPLHWNF KRNVWQQQNH SFNLQYGAEQ bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 THETKGPTSK ELSAPVFSLE GSQSPLHWNF KRNVWEQQNH SFNLQYGAEQ 1451 1500 ENSP00000363405/1-1444 TACNKLYSQK GNLFTDQQKC LSDESEGLTC ESSKDE---T FWRELPSVPS ENSBTAP00000053472/1-1446 STCDKWYSQK DNLFINQRKY QSDELEGFIC ESSNAGTKKT FWKELPSVPS ENSTTRP00000013622/1-1504 NTCDKWSSQK DNLFTNQQKC LSDELEGLIC ESSNAETKKT FWKELPSVPS bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 NTCDKWYSQK DSLFTNQQKC LSDELEGFIC ESSNAETKKT FWKELPSVPS 1501 1550 ENSP00000363405/1-1444 LDLFRASDSN ANQKEFNSLY FYQRAGKSLG QKRHHESSFN SGDKESLTGF ENSBTAP00000053472/1-1446 LDLSCASDSN VNQKEFNSLY FYQRAGKCLG QKRHSESSSN SGDNNSLTDF ENSTTRP00000013622/1-1504 LDLFCASDSN VSQKEFNSLY FYQRAGKCLG QKRHSVSSSN SGDKKSLTXX bmy_12595T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU007337/1-928 LDLFCASDSN ISHAHNYHHS KHDV------ ---------- ---------- 1551 1600 ENSP00000363405/1-1444 MCSQLPQFKK RRLAYEKVPG RVDGQTRLRF F ENSBTAP00000053472/1-1446 TCLQPAQFKK QRLVYEKVPG RLDGQTRLRF F ENSTTRP00000013622/1-1504 XXXXXXXXXX RRLVYE-VPG RRDGQTRLRF F bmy_12595T0/1-755 ---------- ---------- ---------- - BACU007337/1-928 ---------- ---------- ---------- -