KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:03 2014 Check: 00 .. Name: ENSTTRP00000008641/1-734 Len: 782 Check: 2071 Weight: 1.00 Name: ENSP00000296318/1-739 Len: 782 Check: 9336 Weight: 1.00 Name: ENSBTAP00000053482/1-738 Len: 782 Check: 1686 Weight: 1.00 Name: bmy_05646T0/1-757 Len: 782 Check: 7439 Weight: 1.00 Name: BACU015061/1-689 Len: 782 Check: 2156 Weight: 1.00 // 1 50 ENSTTRP00000008641/1-734 MAPWLQLCSV FFTVNACLNG SQLAVAAGGS SRTRGADTCG WR-------- ENSP00000296318/1-739 MAPWLQLCSV FFTVNACLNG SQLAVAAGGS GRARGADTCG WR-------- ENSBTAP00000053482/1-738 MAPWLQLCSV FFTVNACLNG SQLAVAAGGS SRARGADTCG WR-------- bmy_05646T0/1-757 MAPWLQLCSV FFTVNACLNG SQLAVAAGGS SRTRGADTCG WRLVVLCQKD BACU015061/1-689 -------MAL VYP--KCRQE SQ-------- ---------- ---------- 51 100 ENSTTRP00000008641/1-734 ---------- ---------- ---------- ----GVGPAS -NSGLHNITF ENSP00000296318/1-739 ---------- ---------- ---------- ----GVGPAS RNSGLYNITF ENSBTAP00000053482/1-738 ---------- ---------- ---------- ----GVGLAS RNSGLYNITF bmy_05646T0/1-757 TGQDGQSFML ASAFEGLPVP PAGSSLSAFM CFDAGVGPAS RNSGLHNITF BACU015061/1-689 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008641/1-734 RYDNCTTYLN PVGKHVIADA QNITISQYAC HDQVAVTILW SPGALGIEFL ENSP00000296318/1-739 KYDNCTTYLN PVGKHVIADA QNITISQYAC HDQVAVTILW SPGALGIEFL ENSBTAP00000053482/1-738 RYDNCTTYLN PVGKHMIADA QNITISQYAC HDQVAVTILW SPGALGIEFL bmy_05646T0/1-757 RYDNCTTYLN PVGKHVIADA QNITISQYAC HDQVAVTILW SPGALGIEFL BACU015061/1-689 ---DCTTYLN PVGKHVIADA QNITISQYAC HDQVAVTILW SPGALGIEFL 151 200 ENSTTRP00000008641/1-734 KGFRVILEEL KSEGRQCQQL ILKDPKQLNS SFKRAGVESQ PFLNMKFETD ENSP00000296318/1-739 KGFRVILEEL KSEGRQCQQL ILKDPKQLNS SFKRTGMESQ PFLNMKFETD ENSBTAP00000053482/1-738 KGFRVILEEL KSEGRQCQQL ILKDPKQLNS SFKRAGMESQ PFLNMKFETD bmy_05646T0/1-757 KGFRVILEEL KSEGRQCQQL ILKDPKQLNS SFKRAGVESQ PFLNMKFETD BACU015061/1-689 KGFRVILEEL KSEGRQCQQL ILKDPKQLNS SFKRAGVESQ PFLNMKFETD 201 250 ENSTTRP00000008641/1-734 YFVKIVPFPS IKNESNYHPF FFRTRTCDLL LQPDNLACKP FWKPRNLNIT ENSP00000296318/1-739 YFVKVVPFPS IKNESNYHPF FFRTRACDLL LQPDNLACKP FWKPRNLNIS ENSBTAP00000053482/1-738 YFVKIVPSFS IKNESNYHPF FFRTRTCDLL LQPDNLACKP FWKPRNLNIT bmy_05646T0/1-757 YFVKIVPFPS IKNESNYHPF FFRTRTCDLL LQPDNVACKP FWKPRNLNVT BACU015061/1-689 YFVKIVPFPS IKNESNYHPF FFRTRTCDLL LQPDNLACKP FWKPRNLNVT 251 300 ENSTTRP00000008641/1-734 QHGSDMQVSF DHAPHAFGFR FFYLHYKLKH EGPFKRKTCK QEQNTETTSC ENSP00000296318/1-739 QHGSDMQVSF DHAPHNFGFR FFYLHYKLKH EGPFKRKTCK QEQTTETTSC ENSBTAP00000053482/1-738 QHGSDMQVSF DHAPHTFGFR FFYLHYKLKH EGPFKRKTCK QEQNTEITSC bmy_05646T0/1-757 QHGSDMQVSF DHAPHTFGFR FFYLHYKLKH EGPFKRKTCK Q--------- BACU015061/1-689 QHGSDMQVSF DHAPHTFGFR FFYLHYKLKH EGPFKRKTCK QEQNTETTSC 301 350 ENSTTRP00000008641/1-734 LLQNVSPGDY IIELVDDTNM TRKVXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296318/1-739 LLQNVSPGDY IIELVDDTNT TRKVMHYALK PVHSPWAGPI RAVAITVPLV ENSBTAP00000053482/1-738 LLQNVSPGDY IIELVDDSNT TRKVMHYALK PVHSPWAGPI RAVAITVPLV bmy_05646T0/1-757 ---------- ---LVDDTNM TRKVMHYALK PVHSQWAGPI RAVAITVPLV BACU015061/1-689 LLQNVSPGDY IIELVDDTNM TRKVMHYALK PVHSQWAGPI RAVAITVPLV 351 400 ENSTTRP00000008641/1-734 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXALP RERLRPRPKV ENSP00000296318/1-739 VISAFATLFT VMCRKKQQEN IYSHLDEESS ESSTYTAALP RERLRPRPKV ENSBTAP00000053482/1-738 VISAFATLFT VMCRKKQQEN IYSHLDEESS ESSTYTTALP RERLRPRPKV bmy_05646T0/1-757 VISAFATLFT VMCRKKQQEN IYSHLDEESS ESSTYITALP RERLRPRPKV BACU015061/1-689 VISAFATLFT VMCRKKQQEN IYSHLDEESS ESSTYITALP RERLRPRPKV 401 450 ENSTTRP00000008641/1-734 FLCY-SKDGQ NHMNVVQVFA YFLQDFCGCE VALDLWEDFS LCREGQREWV ENSP00000296318/1-739 FLCYSSKDGQ NHMNVVQCFA YFLQDFCGCE VALDLWEDFS LCREGQREWV ENSBTAP00000053482/1-738 FLCYSSKDGQ NHMNVVQCFA YFLQDFCDCE VALDLWEDFS LCRERQREWV bmy_05646T0/1-757 FLCYSSKDGQ NHMNVVQCFA YFLQDFCGCE VTLDLWEDFS LCREGQREWV BACU015061/1-689 FLCYSSKDGQ NHMNVVQCFA YFLQDFCGCE VTLDLWEDFS LCREGQREWV 451 500 ENSTTRP00000008641/1-734 IQKIHESQFI IVVCSKGMKY FVD-KNYKHK GGARGSGKGE LFLVAVSTIA ENSP00000296318/1-739 IQKIHESQFI IVVCSKGMKY FVDKKNYKHK GGGRGSGKGE LFLVAVSAIA ENSBTAP00000053482/1-738 IQKIHESQFI IVVCSKGMKY FVDKKNYKHK GGGRGSGKGE LFLVAVSAIA bmy_05646T0/1-757 IQKIHESQFI IVVCSKGMKY FVDKKNYKHK GGARGSGKGE LFLVAVSTIA BACU015061/1-689 VQKIHESQFI IVVCSKGMKY FVDKKNYKHK GGARGSGKGE LFLVAVSTIA 501 550 ENSTTRP00000008641/1-734 EKLRQAKQSS STALSKFIAV YFDYSCEGDV PGVLDLSTKY KLMDHLPQLC ENSP00000296318/1-739 EKLRQAKQSS SAALSKFIAV YFDYSCEGDV PGILDLSTKY RLMDNLPQLC ENSBTAP00000053482/1-738 EKLHQAKQSS STALSKFIAV YFDYSCEGDV PGVLDLSTKY KLMDHLPQLC bmy_05646T0/1-757 EKLRQAKQSS STALSKFIAV YFDYSCEGDV PGVLDLSTKY KLMDHLPQLC BACU015061/1-689 EKLRQAKQSS STALSKFIAV YFDYSCEGDV PGVLDLSTKY KLMDHLPQLC 551 600 ENSTTRP00000008641/1-734 SHLHSQDLSP QEPGLQPGRI SRRNYFRSKS GRSLYVAICN MHQFIDEEPD ENSP00000296318/1-739 SHLHSRDHGL QEPGQHTRQG SRRNYFRSKS GRSLYVAICN MHQFIDEEPD ENSBTAP00000053482/1-738 SHLHSQDRSL PEPGLQPGRV SRRNYFRSKS GRSLYVAICN MHQFIDEEPD bmy_05646T0/1-757 SHLHSQDLSP QEPGLHPGRI SRRNYFRSKS GRSLYVAICN MHQFIDEEPD BACU015061/1-689 SHLHSQDLSP QEPGLHPGRI SRRNYFRSKS GRSLYVAICN MHQFIDEEPD 601 650 ENSTTRP00000008641/1-734 WFEKQFVPFH LPPLRYREPV LKKFDSGLVL NEVLCKPGPE SDFCLKAEAA ENSP00000296318/1-739 WFEKQFVPFH PPPLRYREPV LEKFDSGLVL NDVMCKPGPE SDFCLKVEAA ENSBTAP00000053482/1-738 WFEKQFSPLH PPPLRYREPV LEKFDSGLVL NEVLCKPGPE NEFSLKAESA bmy_05646T0/1-757 WFEKQFVPFH LPPLRYREPV LEKFDSGLVL NEVLCKPGPE SDFCLKAEAA BACU015061/1-689 WFEKQFVPFH LPPLRYREPV LEKFDSGLVL NEVLCKPGPE SDFCVKAEAA 651 700 ENSTTRP00000008641/1-734 --GSGAPADP HSEGSQFAPD EDAEAGP-VP GASAVLRPLL HAVKAAGPSD ENSP00000296318/1-739 VLGATGPADS QHESQHGGLD QDGEARP-AL DGSAALQPLL HTVKAGSPSD ENSBTAP00000053482/1-738 --GPGTPADS HSEGPQFGPE EDVEAGPVVA GASAVLRPLL HAGKAAGPSD bmy_05646T0/1-757 --GSGAPADP HSEGPQFGSD EDAEAGP-VP GASAVLRPLL HAVKAAGPSD BACU015061/1-689 --GSGARADP HSEGPQFGPD EDAEAGP-VP GASAVLRPLL HAVKAAGPSD 701 750 ENSTTRP00000008641/1-734 MPRDSGIYDS SVPSSELSLP LMEGLSTDQT ETSSLTESLS SSSGLGEEDP ENSP00000296318/1-739 MPRDSGIYDS SVPSSELSLP LMEGLSTDQT ETSSLTESVS SSSGLGEEEP ENSBTAP00000053482/1-738 MPRDSGIYDS SVPSSELSLP LMEGLSADQT ETSSLTESVS SSSGLGEEDP bmy_05646T0/1-757 MPRDSGIYDS SVPSSELSLP LMEGLSTDQT ETSSLTESMS SSSGLGEEDP BACU015061/1-689 MPRDSGIYDS SVPSSELSLP LMEGLSTDQT ETSSLTESMS SSSGLGEEDP 751 800 ENSTTRP00000008641/1-734 PALPSKLLAS GACKAEPGCC SYTGELHTVA PL ENSP00000296318/1-739 PALPSKLLSS GSCKADLGCR SYTDELHAVA PL ENSBTAP00000053482/1-738 PALPSKLLAS GACKAEPGCC SYTGELHTVA PL bmy_05646T0/1-757 PALPPKLLAS GACKAEPGCC SYTGELHAVP PL BACU015061/1-689 PALPSKLLAS GACKAEPGCC SYTGELHAVA PL