KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:05:06 2014 Check: 00 .. Name: bmy_17653T0/1-237 Len: 356 Check: 2366 Weight: 1.00 Name: ENSBTAP00000053485/1-355 Len: 356 Check: 6694 Weight: 1.00 Name: BACU006059/1-293 Len: 356 Check: 5286 Weight: 1.00 Name: ENSTTRP00000013159/1-311 Len: 356 Check: 8821 Weight: 1.00 // 1 50 bmy_17653T0/1-237 MTGSAADTHR CPHPKGAKGT RSRSSHARPV SLATSGGSEE EDKDGGVLFH ENSBTAP00000053485/1-355 MTGSAADTHR RPHPKGAKGT RSRSSHARPV SLATSGGSEE EDKDGGVLFH BACU006059/1-293 MTGSAADTHR CPHPKGAKGT RSRSSHARPV SLATSGGSEE EDKDGGVLFH ENSTTRP00000013159/1-311 MTGSAADTHR CPHPKGAKGT RSRSSHARPV SLATSGGSEE EDKDGGVLFH 51 100 bmy_17653T0/1-237 VNKSGFPIDS HTWERMWMHV AKVHPKGGEM VGAIRNATFL AKPSVPQVPN ENSBTAP00000053485/1-355 VNKSGFPIDS HTWERMWLHV AKVHPKGGEM VGAIRNATFL AKPSIPQVPN BACU006059/1-293 VNKSGFPIDS HTWERMWMHV AKVHPKGGEM VGAIRNATFL AKNELVQACQ ENSTTRP00000013159/1-311 VNKSGFPIDS HTWERMWMHV AKVHPKGGEM VGAIRNATFL AKXXXXXXXX 101 150 bmy_17653T0/1-237 YRLSMTIPDW LQAIQNYMKT LQYNHTGTQF FEIRKMRPLS GLMETAKEMT ENSBTAP00000053485/1-355 YRLSMTIPDW LQAIQNYMKT LQYNHTGTQF FEIRKMRPLS GLMETAKEMT BACU006059/1-293 SLRPCGQPAK SQFVDN---- ---------- ---------- AVVFSDLVMS ENSTTRP00000013159/1-311 XXXXXXXXXX XXX------- ---------- ---------- ---------- 151 200 bmy_17653T0/1-237 RESLPIKCLE AVILGMYPLS DG-------- ---------- ------LRCW ENSBTAP00000053485/1-355 RESLPIKCLE AVILGI-YLT NGQPSIERFP ISFKTYFSGN YFHHVVLGIY BACU006059/1-293 NISPGMKGKY YLHNSLRYLT NGQPSIERFP ISFKTYFSGN YFHHVVLGIY ENSTTRP00000013159/1-311 --------XX XXXXXXXYLT NGQPSIERFP ISFKTYFSGN YFHHVVLGIY 201 250 bmy_17653T0/1-237 AVGRHE--GR SVRNQCGNSS ---------- ---------Y L--------- ENSBTAP00000053485/1-355 CNGRYGSLGM SRRAELMDKP LTFRTLSDLI FDFEDSYKKY LHTVKKVKIG BACU006059/1-293 CNGRYGSLGM SRRAELMDKP LTFRTLSDLI FDFEDSYKKY LHTVKKVKIG ENSTTRP00000013159/1-311 CNGRYGSLGM SRRAELMDKP LTFRTLSDLI FDFEDSYKKY LHTVKKVKIG 251 300 bmy_17653T0/1-237 ---------- ---------- ---------- ---------- --LQILKPAS ENSBTAP00000053485/1-355 LYVPHEPHSF QPIEWKQLVL NVSKMLRADI RKELEKYARD MRMKILKPAS BACU006059/1-293 LYVPHEPHSF QPIEWKQLVL NVSKMLRADI RKELEKYARD MRMK------ ENSTTRP00000013159/1-311 LYVPHEPHSF QPIEWKQLVL NVSKMLRADI RKELEKYARD MRMKXXXXXX 301 350 bmy_17653T0/1-237 AHSPTQVRSR GKSLSPRRRQ ASPPRRLGRR DKS------- ---------- ENSBTAP00000053485/1-355 AHSPTQVRSR GKSLSPRRRQ ASPPRRLGRR DKSPALPEKK VADVSTLNEV BACU006059/1-293 ---------- ---------- ------VTGC LFVPAPPEL- ---VESLRE- ENSTTRP00000013159/1-311 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXPALPEKK VADLSTLNEV 351 400 bmy_17653T0/1-237 ------ ENSBTAP00000053485/1-355 GYQIRI BACU006059/1-293 --KACV ENSTTRP00000013159/1-311 GYQIRI