KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:07 2014 Check: 00 .. Name: BACU001537/1-848 Len: 955 Check: 9017 Weight: 1.00 Name: ENSP00000262429/1-946 Len: 955 Check: 4391 Weight: 1.00 Name: ENSBTAP00000053487/1-915 Len: 955 Check: 4877 Weight: 1.00 Name: ENSTTRP00000011695/1-937 Len: 955 Check: 2566 Weight: 1.00 Name: bmy_21897T0/1-849 Len: 955 Check: 3216 Weight: 1.00 // 1 50 BACU001537/1-848 ---------- ---------- ---------- ---------- -------MIP ENSP00000262429/1-946 MVEGRVSEFL KKLGFSGGGR QYQALEKDEE EALIDEQSEL KAIEKEKKVT ENSBTAP00000053487/1-915 ---------- ---------- ---------- -SQIDGQNDL KAIEKEKTVV ENSTTRP00000011695/1-937 MVEGRFSKFL KKLAFSGGGH QYQLLERGEL ETLIDGHNEL KAIEKEKTVV bmy_21897T0/1-849 ---------- ---------- ---------- ---IDGQNEL KAIEKEKTVV 51 100 BACU001537/1-848 VLTSKKASEL PVTEVASILQ ADLQNGLNKC EVSHRRAFHG WNEFDISEDE ENSP00000262429/1-946 ALPPKEACKC QKEDLARAFC VDLHTGLSEF SVTQRRLAHG WNEFVADNSE ENSBTAP00000053487/1-915 ALEPKEASKC HREDLAKAFY VDLQNGLSEF SVTQRRLVHG WNEFVADNTE ENSTTRP00000011695/1-937 ALPAKEASKC HREDLAKAFY VDLQNGLSEF SVTQRRLVHG WNEFVADNTE bmy_21897T0/1-849 ALPPKEASKC HREDLAEAFY VDLQNGLSEF SVTQRRLVHG WNEFVADNTE 101 150 BACU001537/1-848 PLWKKYISQF KNPLIMLLLA SAVISVLMHQ FDDAVSITVA ILIVVTVAFV ENSP00000262429/1-946 PVWKKYLDQF KNPLILLLLG SALVSVLTKE YEDAVSIATA VLVVVTVAFI ENSBTAP00000053487/1-915 PVWKKYLDQF KNPLILLLLA SALVSVLTKK YEDAISIAVA VLIVVTVAFI ENSTTRP00000011695/1-937 PVWKKYLDQF KNPLILLLLA SALVSVLTKE YEDAISIAMA VLMVVTVAFI bmy_21897T0/1-849 PVWKKYLDQ- ---------- ---------- ---------A VLIVVTVAFI 151 200 BACU001537/1-848 QEYRSEKSLE ELSKLMPPAP ECHCVREGKL EHTLARDLVP GDTVCLSVGD ENSP00000262429/1-946 QEYRSEKSLE ELTKMVP--P ECNCLREGKL QHLLARELVP GDVVSLSIGD ENSBTAP00000053487/1-915 QEYRSEKSLE ELTKLVP--P ECNCIREGKL QHLLARDLVP GDIVSLSIGD ENSTTRP00000011695/1-937 QEYRSEKSLE ELTKLVP--P ECNCIREGKL HHLLARDLVP GDIVSLSIGD bmy_21897T0/1-849 QEYRSEKSLE ELTKLVP--P ECNCIREGKL QHLLARDLVP GDIVSLSIGD 201 250 BACU001537/1-848 RVPADLRLFE AVDLSIDESS LTGETTPCSK VTAPQPAATN GDLASRSNIA ENSP00000262429/1-946 RIPADIRLTE VTDLLVDESS FTGEAEPCSK TDSPLTGG-- GDLTTLSNIV ENSBTAP00000053487/1-915 RVPADIRLTE VTDLLVDESS FTGEAEPSSK TDTPLTGE-- GDLTTLSNIV ENSTTRP00000011695/1-937 RIPADIRLTE VTDLLVDESS FTGEAEPSSK TDTPLTGG-- GDLTTLSNIV bmy_21897T0/1-849 RIPADIRLTE VTDLLVDESS FTGEAEPSSK TDTPLTGV-- GDLTSLSNIV 251 300 BACU001537/1-848 FMGTLVRCGK AKGIVIGTGE NSEFGEVFKM MQAEEAPKTP LQKSMDLLGK ENSP00000262429/1-946 FMGTLVQYGR GQGVVIGTGE SSQFGEVFKM MQAEETPKTP LQKSMDRLGK ENSBTAP00000053487/1-915 FMGTLVQCGK GQGVVIGTGE KSQFGEVFKM MQAEETPKTP LQKSMDKLGK ENSTTRP00000011695/1-937 FMGTLVQYGK GQGVVIGTGE RSQFGEVFKM MQAEETPKL- LQKS------ bmy_21897T0/1-849 FMGTLVQYGK GQGVVIGTGE RSQFGEVFKM MQAEETPKTP LQKSMDKLGK 301 350 BACU001537/1-848 QLSFYSFGII GIIMLVGWLL GKDILEMFTI SVSLAVAAIP EGLPIVVTVT ENSP00000262429/1-946 QLTLFSFGII GLIMLIGWSQ GKQLLSMFTI GVSLAVAAIP EGLPIVVMVT ENSBTAP00000053487/1-915 QLTLFSFGII GLIMFTGWLQ GKHLLSMFTI GVSLAVAAIP EGLPIVVTVT ENSTTRP00000011695/1-937 DLTLFH--RI CLIMFTGWLQ GKHLLSMFTI GVSLAVAAIP EGLPIVVTVT bmy_21897T0/1-849 QLTLFSFGII GLIMFTGWLQ GKHLLSMFTI GVSLAVAAIP EGLPIVVTVT 351 400 BACU001537/1-848 LALGVMRMVK KRAIVKKLPI VETLGCCNVI CSDKTGTLTK NEMTVTHVFT ENSP00000262429/1-946 LVLGVLRMAK KRVIVKKLPI VETLGCCSVL CSDKTGTLTA NEMTVTQLVT ENSBTAP00000053487/1-915 LVLGVLRMAR KRVIVKKLPI VETLGCCNVI CSDKTGTLTA NEMTVTQLVT ENSTTRP00000011695/1-937 LVLGVLRMAR KRVIVKKLPI VETLGCCNVI CSDKTGTLTA NEMTVTQLVT bmy_21897T0/1-849 LVLGVLRMAR KRVIVKKLPI VETLGCCNVI CSDKTGTLTA NEMTVTQLVT 401 450 BACU001537/1-848 SDGLRAEVTG VGYNPFGEVI V--DGDVVHG FYNPSVSRIV EAGCVCNDAV ENSP00000262429/1-946 SDGLRAEVSG VGYDGQGTVC LLPSKEVIKE FSNVSVGKLV EAGCVANNAV ENSBTAP00000053487/1-915 SDGLHAEVSG VGYNGNGTVC LLPSKEVIKQ FSNVSVGKLV EAGCVANNAI ENSTTRP00000011695/1-937 SDGLHAEVSG VGYNGQGTVC LLPSKEVIKQ FSNISVGKLV EAGCVANNAT bmy_21897T0/1-849 SDGLHAEVSG VGYNGQGTVC LLPSKEVIKQ FSNVSVGKLV EAGCVANNAI 451 500 BACU001537/1-848 IRNNTLMGKP TEGALIALAM KMGLDGLQQD YIRKAEYPFS SEQKWMAVKC ENSP00000262429/1-946 IRKNAVMGQP TEGALMALAM KMDLSDIKNS YIRKKEIPFS SEQKWMAVKC ENSBTAP00000053487/1-915 IRKNTVMGQP TEGALVALAM KMDLGDIKDS YIRKKEIPFS SEQKWMAVQC ENSTTRP00000011695/1-937 IRKNAMMGQP TEGALVALAM KMGLNDIKDS YKRKKEIPFS SEQKWMAVQC bmy_21897T0/1-849 IRKNAVMGQP TEGALMALAM KMGLSDIKDS YMRKKEIPFS SEQKWMAVQC 501 550 BACU001537/1-848 VHRTQQDRPE ICFMKGAYEQ VIKYCTTYHS KGQTLTLTQQ QKDLYQQEKA ENSP00000262429/1-946 SLKT-EDQED IYFMKGALEE VIRYCTMYNN GGIPLPLTPQ QRSFCLQEEK ENSBTAP00000053487/1-915 SSKN-EERED MYFMKGAFEE VIRYCAMYNH GGIPLPLTPQ QRAFCQQEEK ENSTTRP00000011695/1-937 SPRN-EEQED IYFMKGAFEE VIRYCTMYNH GGIPLPLTPQ QRAFCQQEEK bmy_21897T0/1-849 SPKN-E---- ---------- ---------- ---------- QRAFCQQEEK 551 600 BACU001537/1-848 QMGSAGLR-- ---------- ---------- ---------- ---------- ENSP00000262429/1-946 RMGSLGLRVL ALASGPELGR LTFLGLVGII DPPRVGVKEA VQVLSESGVS ENSBTAP00000053487/1-915 KMGSLGLRVL ALASGPELGK LTFLGLIGII DPPRAGVKEA VQVLSESGLS ENSTTRP00000011695/1-937 RMGSLGLRVL ALASGPELGE LTFLGLIGII DPPRAGVEEA VHVLSDSGLS bmy_21897T0/1-849 MMGSLGLRVL ALASGPELGK LTFLGLIGII DPPRAGVEEA VHVLSDSGLS 601 650 BACU001537/1-848 ---------- -----ASRLG LYSKTSQSVS GEEIDAMDVQ QLSQMVPKVA ENSP00000262429/1-946 VKMITGDALE TALAIGRNIG LCNGKLQAMS GEEVDSVEKG ELADRVGKVS ENSBTAP00000053487/1-915 VKMITGDALE TALAIGRNVG LCNGKLSAMS GEEVESAEQG ELAEHIGKVS ENSTTRP00000011695/1-937 VKMITGDALE TALAIGRNIG LCNGKLSAMS GEEVESAEQG ELAERVGKVS bmy_21897T0/1-849 VKMITGDALE TALAIGRNIG LCNGKLSAMS GEEVESAQQG ELAERVGKVS 651 700 BACU001537/1-848 VFYRASPRHK MKIIKSLQKN GSVVAMTGDG VNDAVALKAA DIGVAMGQTG ENSP00000262429/1-946 VFFRTSPKHK LKIIKALQES GAIVAMTGDG VNDAVALKSA DIGIAMGQTG ENSBTAP00000053487/1-915 VFYRTSPKHK LKIIKALQET GAIVAMTGDG VNDAVALKSA DIGIAMGQTG ENSTTRP00000011695/1-937 VFFRTSPKHK LKIIKALQES GAIVAMTGDG VNDAVALKSA DIGIAMGRTG bmy_21897T0/1-849 VFFRTSPKHK LKIIKALQES GAIVAMTGDG VNDAVALKSA DIGIAMGQTG 701 750 BACU001537/1-848 TDVCKEAADM ILVDDDFQTI MSAIEEGKGI YNNIKNFVRF QLSTSIAALT ENSP00000262429/1-946 TDVSKEAANM ILVDDDFSAI MNAVEEGKGI FYNIKNFVRF QLSTSISALS ENSBTAP00000053487/1-915 TDVSKEAANM ILVDDEFSAI MNAVEEGKGI FHNIKNFVRF QLSTSISALS ENSTTRP00000011695/1-937 TDVSKEAANM ILVDDDFSAI MNAVEEGKGI FHNIKNFVRF QLSTSISALS bmy_21897T0/1-849 TDVSKEAANM ILVDDDFSAI MNAVEEGKGI FHNIKNFVRF QLSTSISALS 751 800 BACU001537/1-848 LISLATLMNF PNPLNAMQIL WINIIMDGPP AQSLGVEPVD KDVIRKPPRN ENSP00000262429/1-946 LITLSTVFNL PSPLNAMQIL WINIIMDGPP AQSLGVEPVD KDAFRQPPRS ENSBTAP00000053487/1-915 LITLSTVCNL PNPLNAMQIL WINIIMDGPP AQSLGVEPVD KDTLRQPPRN ENSTTRP00000011695/1-937 LITLSTVCNL PSPLNAMQIL WINIIMDGPP AQSLGVEPVD RDTLRQPPRN bmy_21897T0/1-849 LITLSTVCNL PSPLNAMQIL WINIIMDGPP AQSLGVEPVD RDTLRQPPRN 801 850 BACU001537/1-848 WKDSILTKNL ILKILVSSII IVCGTLFVFW REL-RDNVIT PRDTTMTFTC ENSP00000262429/1-946 VRDTILSRAL ILKILMSAAI IISGTLFIFW KEMPEDRAST PRTTTMTFTC ENSBTAP00000053487/1-915 VKDQILSRAL VLRILLSATT IISGTLFIFW KEMPEDRAST PRTTTMAFTC ENSTTRP00000011695/1-937 VKDVILGRAL ILKILLSAAT IISGTLFIFW KEMPEDKAST PRTTTMTFTC bmy_21897T0/1-849 IKDVILGRAL ILKILLSAAX IISGTLFIFW KEMPEDKAST PRTTTMTFTC 851 900 BACU001537/1-848 FVFFDMFNAL SSRSQTKSVF EIGLCSNKMF CYAVLGSIMG QLLVIYFPPL ENSP00000262429/1-946 FVFFDLFNAL TCRSQTKLIF EIGFLRNHMF LYSVLGSILG QLAVIYIPPL ENSBTAP00000053487/1-915 FVFFDLFNAL TCRSQTKLIF EIGFLRNRTF LYSVLGSILG QLAVIYTPPL ENSTTRP00000011695/1-937 FVLFDLFNAL TCRSQTKLIS EIGFLRNRTF LYSVLGSVLG QLAVIYLPPL bmy_21897T0/1-849 FVLFDLFNAL TCRSQTKLIF EIGFLRNRTF LYSVLGSVLG QLAVIYLPPL 901 950 BACU001537/1-848 QKVFQTESLS ILDLLFLLGL TSSVCIVAEI IKKVERSREK IQKPVSSTSS ENSP00000262429/1-946 QRVFQTENLG ALDLLFLTGL ASSVFILSEL LKLCEKYCCS PKRVQMHPE- ENSBTAP00000053487/1-915 QRVFQTESLG ALDLLLLTGL ASSVFILSEL FKLCEKFCCR AQKAQTPQE- ENSTTRP00000011695/1-937 QKVFQTENLG ALDLLLLTGL ASSVFVLSEL FKLCEKFCSR AQKAQIHQE- bmy_21897T0/1-849 QKVFQTENLG ALDLLLLTGL ASSVFILSEL FKLCEKFCSR AKKAQIHQE- 951 1000 BACU001537/1-848 SFLEV ENSP00000262429/1-946 ---DV ENSBTAP00000053487/1-915 ---DA ENSTTRP00000011695/1-937 ---DV bmy_21897T0/1-849 ---DV