KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:08 2014 Check: 00 .. Name: ENSTTRP00000009358/1-1531 Len: 1536 Check: 9810 Weight: 1.00 Name: ENSP00000266058/1-1534 Len: 1536 Check: 2671 Weight: 1.00 Name: ENSBTAP00000053488/1-1396 Len: 1536 Check: 4921 Weight: 1.00 Name: bmy_11413T0/1-1323 Len: 1536 Check: 8329 Weight: 1.00 Name: BACU012440/1-1372 Len: 1536 Check: 684 Weight: 1.00 // 1 50 ENSTTRP00000009358/1-1531 MALTTWRGPS AGLVRPELWL LLWAAAWRLG TTACPALCTC TGTTVDCHGT ENSP00000266058/1-1534 MALTPGWGSS AGPVRPELWL LLWAAAWRLG ASACPALCTC TGTTVDCHGT ENSBTAP00000053488/1-1396 ---------- ---------- ---------- ---------- ---------- bmy_11413T0/1-1323 ---------- ---------- ---------- ---------- ---------- BACU012440/1-1372 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009358/1-1531 GLQAVPKNIP RNTERLELNG NKITRIHKND FAGLKQLRVL QLMENQIGVV ENSP00000266058/1-1534 GLQAIPKNIP RNTERLELNG NNITRIHKND FAGLKQLRVL QLMENQIGAV ENSBTAP00000053488/1-1396 ---------- ---------- ---------- ---------- ---------- bmy_11413T0/1-1323 ---------- ---------- ---------- ---------- ---------- BACU012440/1-1372 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009358/1-1531 ERGAFDDMKE LERLRLNRNQ LYALPELLFQ NNQALSRLDL SENAIQAIPR ENSP00000266058/1-1534 ERGAFDDMKE LERLRLNRNQ LHMLPELLFQ NNQALSRLDL SENAIQAIPR ENSBTAP00000053488/1-1396 ---------- ---------- ---------- --------DL SENTIQAIPR bmy_11413T0/1-1323 ---------- ---------- ---------- ---------- ---------- BACU012440/1-1372 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000009358/1-1531 KAFRGATDLK NLQLDKNQIS CIEEGAFRAL RGLE--VLTL NNNSITTIPV ENSP00000266058/1-1534 KAFRGATDLK NLQLDKNQIS CIEEGAFRAL RGLE--VLTL NNNNITTIPV ENSBTAP00000053488/1-1396 KAFRGATDLK NLQLDKNQIG CIEEGAFRAL RGLE--VLTL NNNNITTIPV bmy_11413T0/1-1323 ---------- --MVTKPLWT T---GAWGRL AGGQEGSRDL SENTIQAIPR BACU012440/1-1372 ---------- --QLDKNQIS CIEEGAFRAL RGLE--VLTL NNNSITTIPV 201 250 ENSTTRP00000009358/1-1531 SSFNHMPKLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL ENSP00000266058/1-1534 SSFNHMPKLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL ENSBTAP00000053488/1-1396 SSFNHMPKLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPAGL bmy_11413T0/1-1323 KAFRGATDLK NFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL BACU012440/1-1372 SSFNHMPRLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL 251 300 ENSTTRP00000009358/1-1531 RGLNVAEVQK SEFSCPGQGE AGHVPSCTLS SGSCPAMCTC SNGIVDCRGK ENSP00000266058/1-1534 RGLNVAEVQK SEFSCSGQGE AGRVPTCTLS SGSCPAMCTC SNGIVDCRGK ENSBTAP00000053488/1-1396 RGLNVAEVQK SEFSCSGQGE AGRTPSCTLS SGSCPAMCAC SNGIVDCRGK bmy_11413T0/1-1323 RGLNVAEVQK SEFSCPGQGE AGHVPSCTLS SGSCPAMCTC SNGIVDCRGK BACU012440/1-1372 RGLNVAEVQK SEFSCSGQGE AGHVPSCTLS SGSCPAMCTC SNGIVDCRGK 301 350 ENSTTRP00000009358/1-1531 GLTAIPANLP ETMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQISEI ENSP00000266058/1-1534 GLTAIPANLP ETMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQIAEI ENSBTAP00000053488/1-1396 GLTAIPANLP EAMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQISEI bmy_11413T0/1-1323 GLTAIPANLP ETMTE----- ---------- ---------I DLSNNQILEI BACU012440/1-1372 GLTAIPANLP ETMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQISEI 351 400 ENSTTRP00000009358/1-1531 APDAFQGLRS LNSLVLYGNK ITDLPRGVFG GLFTLQLLLL NANKINCIRP ENSP00000266058/1-1534 APDAFQGLRS LNSLVLYGNK ITDLPRGVFG GLYTLQLLLL NANKINCIRP ENSBTAP00000053488/1-1396 APDAFQGLRS LNSLVLYGNK ITDLPQGVFG GLFTLQLLLL NANKINCIRL bmy_11413T0/1-1323 APDAFQGLRS LNSLVLYGNK ITDLPQGVFG GLFTLQLLLL NANKINCIRP BACU012440/1-1372 APDAFQGLRS LNSLVLYGNK ITDLPRGVFG GLFTLQLLLL NANKINCIRP 401 450 ENSTTRP00000009358/1-1531 NTFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTXXXXQ NP-ICDCNLK ENSP00000266058/1-1534 DAFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK ENSBTAP00000053488/1-1396 DAFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK bmy_11413T0/1-1323 NTFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK BACU012440/1-1372 NTFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK 451 500 ENSTTRP00000009358/1-1531 W-ADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT ENSP00000266058/1-1534 WLADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT ENSBTAP00000053488/1-1396 WLADFLRSNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGA bmy_11413T0/1-1323 WLADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT BACU012440/1-1372 WLADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT 501 550 ENSTTRP00000009358/1-1531 EDYQLNSECN SDVVCPHKCR CEASMVECSG LKLTKIPERI PQATAELRLN ENSP00000266058/1-1534 EDYQLNSECN SDVVCPHKCR CEANVVECSS LKLTKIPERI PQSTAELRLN ENSBTAP00000053488/1-1396 EDYQLNSECN SDVVCPHKCR CEASMVECSS LKLTKIPERV PQATAELRLN bmy_11413T0/1-1323 EDYQLNSECN SDVVCPHKCR CEASMVECSS LKLTKIPERI PQATAELRLN BACU012440/1-1372 EDYQLNSECN SDVVCPHKCR CEASMVECSS LKLTKIPERI PQATAELRLN 551 600 ENSTTRP00000009358/1-1531 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA ENSP00000266058/1-1534 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA ENSBTAP00000053488/1-1396 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA bmy_11413T0/1-1323 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA BACU012440/1-1372 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA 601 650 ENSTTRP00000009358/1-1531 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRS VRLLSLYDNQ ENSP00000266058/1-1534 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRN VRLLSLYDNQ ENSBTAP00000053488/1-1396 NQLESIRSGM FRGLEGLRTL MLRNNRISCI HNDSFTGLRN VRLLSLYDNQ bmy_11413T0/1-1323 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRS VRLLSLYDNQ BACU012440/1-1372 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRS VRLLSLYDNQ 651 700 ENSTTRP00000009358/1-1531 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRR RKIVTGNPRC ENSP00000266058/1-1534 ITTVSPGAFD TLQSLSTLNL LANPFNCNCQ LAWLGGWLRK RKIVTGNPRC ENSBTAP00000053488/1-1396 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRK RKIVTGNPRC bmy_11413T0/1-1323 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRK RKIVTGNPRC BACU012440/1-1372 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRK RKIVTGNPRC 701 750 ENSTTRP00000009358/1-1531 QNPDFLRQIP LQDVAVPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS ENSP00000266058/1-1534 QNPDFLRQIP LQDVAFPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS ENSBTAP00000053488/1-1396 QNPDFLRQIP LQDVASPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS bmy_11413T0/1-1323 QNPDFLRQIP LQDVAVPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS BACU012440/1-1372 QNPDFLRQIP LQDVAVPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS 751 800 ENSTTRP00000009358/1-1531 NKHLQALPKG IPKNATELYL DGNQFTLVPR QLSTFKYLQL VDLSNNKISS ENSP00000266058/1-1534 NKHLRALPKG IPKNVTELYL DGNQFTLVPG QLSTFKYLQL VDLSNNKISS ENSBTAP00000053488/1-1396 NKHLQTLPKG IPKNVTELYL DGNQFTLVPA QLSTFKYLQL VDLSNNKISS bmy_11413T0/1-1323 NKHLQALPKG IPKNATELYL DGNQFTLVPG QLSTFKYLQL VDLSNNKISS BACU012440/1-1372 NKHLQALPKG IPKNATELYL DGNQFTLVPG QLSTFKYLQL VDLSNNKISS 801 850 ENSTTRP00000009358/1-1531 LSNSSFTNMS QLTTLILSYN ALQCIPPLAF QGLRSLRLLS LHGNDVSTLQ ENSP00000266058/1-1534 LSNSSFTNMS QLTTLILSYN ALQCIPPLAF QGLRSLRLLS LHGNDISTLQ ENSBTAP00000053488/1-1396 LSNSSFTNMS QLTTLILSYN SLQCIPPLAF QGLRSLRLLS LHGNDISTLQ bmy_11413T0/1-1323 LSNSSFTNMS QLTT------ ---------- --------LS LHGNDVSTLQ BACU012440/1-1372 LSNSSFTNMS QLTTLILSYN ALQCIPPLAF QGLRSLRLLS LHGNDVSTLQ 851 900 ENSTTRP00000009358/1-1531 EGIFTDVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPPD ENSP00000266058/1-1534 EGIFADVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPQD ENSBTAP00000053488/1-1396 EGIFADVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPLD bmy_11413T0/1-1323 EGIFTDVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPPD BACU012440/1-1372 EGIFTDVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPPD 901 950 ENSTTRP00000009358/1-1531 MEGKLLLTTP AKKFECLGPP SLAVQAKCDP CLSSPCQNRG TCHNDPLGAY ENSP00000266058/1-1534 MEGKLLLTTP AKKFECQGPP TLAVQAKCDL CLSSPCQNQG TCHNDPLEVY ENSBTAP00000053488/1-1396 MEGKLLLTTP AKKFECQGPP TLTVQAKCDP CLSSPCQNQG TCRNDPLVGY bmy_11413T0/1-1323 MEGKLLLTTP AKKFECRGPP TLAVQAKCDP CLSSPCQNRG TCHNDPLGVY BACU012440/1-1372 MEGKLLLTTP AKKFECLGPP TLAVQAKCDP CLSSPCQNQG TCHNDPLGVY 951 1000 ENSTTRP00000009358/1-1531 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CHSQEGEDAG FTCSCPSGFE ENSP00000266058/1-1534 RCACPSGYKG RDCEVSLDSC SSGPCENGGT CHAQEGEDAP FTCSCPTGFE ENSBTAP00000053488/1-1396 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CRSQEGEDAG FTCSCPTGFE bmy_11413T0/1-1323 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CHSQEGEDAG FTCSCPSGFE BACU012440/1-1372 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CHSQEGEDAG FTCSCPSGFE 1001 1050 ENSTTRP00000009358/1-1531 GPTCGVNTDD CVEHSCANGG TCVDGMGSYT CQCPLQYSGT ACEQLVDFCS ENSP00000266058/1-1534 GPTCGVNTDD CVDHACANGG VCVDGVGNYT CQCPLQYEGK ACEQLVDLCS ENSBTAP00000053488/1-1396 GPTCGVDTDD CVEHSCANGG TCVDGVGSYT CQCPLQYSGR ACELLVDFCA bmy_11413T0/1-1323 GPTCGVNTDD CVEHSCANGG TCVDGMGSYT CQCPLQYSGA ACEQLVDFCS BACU012440/1-1372 GPTCGVNTDN CVEHSCANGG TCVDGMGSYT CQCPLQYSGA ACEQLVDFCS 1051 1100 ENSTTRP00000009358/1-1531 SDLNPCQHEA QCVGTPDGPR CECAPGYVGD NCTENRDDCE DHRCQNGAQC ENSP00000266058/1-1534 PDLNPCQHEA QCVGTPDGPR CECMPGYAGD NCSENQDDCR DHRCQNGAQC ENSBTAP00000053488/1-1396 PDLNPCQHEA QCVGTPDGPR CECAPGYAGG NCTEKQDDCR DHRCQNGAQC bmy_11413T0/1-1323 SDLNPCQHEA QCVGTPDGPR CECAPGYAGD NCTENRDDCE DHRCQNGARC BACU012440/1-1372 SDLNPCQHEA QCVGTPDGPR CECAPGYAGD NCTENRDDCE DHRCQNGAQC 1101 1150 ENSTTRP00000009358/1-1531 VDGVNGYSCL CAEGYSGQLC ETPPRPPAPR SPCEGTECQN GANCVDQGSQ ENSP00000266058/1-1534 MDEVNSYSCL CAEGYSGQLC EIPPHLPAPK SPCEGTECQN GANCVDQGNR ENSBTAP00000053488/1-1396 VDEANGYSCL CTQGYSGQLC ETPPRPPGPR SPCEGTECQN GANCVDQGNG bmy_11413T0/1-1323 VDGVNSYSCL CAEGYSGQLC ETPPRPPAPR SPCEGTECQN GANCVDQGSQ BACU012440/1-1372 VDGVNSYSCL CAEGYSGQLC ETPPHPPAPR SPCEGTECQN GANCVDQGSQ 1151 1200 ENSTTRP00000009358/1-1531 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQXXXXX ENSP00000266058/1-1534 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE ENSBTAP00000053488/1-1396 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE bmy_11413T0/1-1323 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE BACU012440/1-1372 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE 1201 1250 ENSTTRP00000009358/1-1531 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA ETINDGQFHT ENSP00000266058/1-1534 DNGILLYNGD NDHIAVELYQ GHVRVSYDPG SYPSSAIYSA ETINDGQFHT ENSBTAP00000053488/1-1396 DNGILLYNGD NDHIAVELYQ GHVRVSYDPG SYPSSAIYST ETINDGQFHT bmy_11413T0/1-1323 DNGILLYNGD DDHIAVELYQ GHVRVSYDPG SYPSSAIYSA ETINDGQFHT BACU012440/1-1372 DNGILLYNGD DDHIAVELYQ GHVRVSYDPG SYPSSAIYSA ETINDGQFHT 1251 1300 ENSTTRP00000009358/1-1531 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA ENSP00000266058/1-1534 VELVAFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA ENSBTAP00000053488/1-1396 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSDAPLYVG GMPVDVNSAA bmy_11413T0/1-1323 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA BACU012440/1-1372 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA 1301 1350 ENSTTRP00000009358/1-1531 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL ENSP00000266058/1-1534 FRLWQILNGT GFHGCIRNLY INNELQDFTK TQMKPGVVPG CEPCRKLYCL ENSBTAP00000053488/1-1396 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL bmy_11413T0/1-1323 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL BACU012440/1-1372 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL 1351 1400 ENSTTRP00000009358/1-1531 HGICQPNATP GPVCHCEAGW EGLHCDQPAD GPCHGHKCVH GKCMPLDALS ENSP00000266058/1-1534 HGICQPNATP GPMCHCEAGW VGLHCDQPAD GPCHGHKCVH GQCVPLDALS ENSBTAP00000053488/1-1396 HGICQPNATP GPVCHCEAGW GGLHCDQPAD GPCHGHKCVH GKCVPLDALS bmy_11413T0/1-1323 HGICQPNATP GPVCHCEAGW EGLHCDQPAD GPCHGHKCVH GKCMPLDALS BACU012440/1-1372 HGICQPNATP GPVCHCEAGW EGLHCDQPAD GPCHGHKCVH GKCVPLDALS 1401 1450 ENSTTRP00000009358/1-1531 YSCQCQDGYS GALCKQAGAP ADPCGGLRCL HGHCQASATK GAHCVCHPGF ENSP00000266058/1-1534 YSCQCQDGYS GALCNQAGAL AEPCRGLQCL HGHCQASGTK GAHCVCDPGF ENSBTAP00000053488/1-1396 YSCQCQDGYS GALCNQAGAP ADPCEGLRCL HGHCQASATK GTYCVCDPGF bmy_11413T0/1-1323 YSCQCQDGYS GALCNQAGAP ADPCGGLRCL HGHCQASATK GTHCVCNPGF BACU012440/1-1372 YSCQCQDGYS GALCNQAGAP ADPCGGLRCL HGHCQASATK GAHCVCDPGF 1451 1500 ENSTTRP00000009358/1-1531 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCPGQGCC ENSP00000266058/1-1534 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCPGQGCC ENSBTAP00000053488/1-1396 SGELCEQESE CRGDPVRDFH QVQRGYAICR TTRPLSWVEC RGSCPGQGCC bmy_11413T0/1-1323 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCXGQGCC BACU012440/1-1372 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCPGQGCC 1501 1550 ENSTTRP00000009358/1-1531 Q-LRLKRRKF TFECSDGTSF AEEVEKPTKC GCAFCA ENSP00000266058/1-1534 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCALCA ENSBTAP00000053488/1-1396 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCALCA bmy_11413T0/1-1323 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCAFCA BACU012440/1-1372 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCAFCA