KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:05:08 2014 Check: 00 ..
Name: ENSTTRP00000009358/1-1531 Len: 1536 Check: 9810 Weight: 1.00
Name: ENSP00000266058/1-1534 Len: 1536 Check: 2671 Weight: 1.00
Name: ENSBTAP00000053488/1-1396 Len: 1536 Check: 4921 Weight: 1.00
Name: bmy_11413T0/1-1323 Len: 1536 Check: 8329 Weight: 1.00
Name: BACU012440/1-1372 Len: 1536 Check: 684 Weight: 1.00
//
1 50
ENSTTRP00000009358/1-1531 MALTTWRGPS AGLVRPELWL LLWAAAWRLG TTACPALCTC TGTTVDCHGT
ENSP00000266058/1-1534 MALTPGWGSS AGPVRPELWL LLWAAAWRLG ASACPALCTC TGTTVDCHGT
ENSBTAP00000053488/1-1396 ---------- ---------- ---------- ---------- ----------
bmy_11413T0/1-1323 ---------- ---------- ---------- ---------- ----------
BACU012440/1-1372 ---------- ---------- ---------- ---------- ----------
51 100
ENSTTRP00000009358/1-1531 GLQAVPKNIP RNTERLELNG NKITRIHKND FAGLKQLRVL QLMENQIGVV
ENSP00000266058/1-1534 GLQAIPKNIP RNTERLELNG NNITRIHKND FAGLKQLRVL QLMENQIGAV
ENSBTAP00000053488/1-1396 ---------- ---------- ---------- ---------- ----------
bmy_11413T0/1-1323 ---------- ---------- ---------- ---------- ----------
BACU012440/1-1372 ---------- ---------- ---------- ---------- ----------
101 150
ENSTTRP00000009358/1-1531 ERGAFDDMKE LERLRLNRNQ LYALPELLFQ NNQALSRLDL SENAIQAIPR
ENSP00000266058/1-1534 ERGAFDDMKE LERLRLNRNQ LHMLPELLFQ NNQALSRLDL SENAIQAIPR
ENSBTAP00000053488/1-1396 ---------- ---------- ---------- --------DL SENTIQAIPR
bmy_11413T0/1-1323 ---------- ---------- ---------- ---------- ----------
BACU012440/1-1372 ---------- ---------- ---------- ---------- ----------
151 200
ENSTTRP00000009358/1-1531 KAFRGATDLK NLQLDKNQIS CIEEGAFRAL RGLE--VLTL NNNSITTIPV
ENSP00000266058/1-1534 KAFRGATDLK NLQLDKNQIS CIEEGAFRAL RGLE--VLTL NNNNITTIPV
ENSBTAP00000053488/1-1396 KAFRGATDLK NLQLDKNQIG CIEEGAFRAL RGLE--VLTL NNNNITTIPV
bmy_11413T0/1-1323 ---------- --MVTKPLWT T---GAWGRL AGGQEGSRDL SENTIQAIPR
BACU012440/1-1372 ---------- --QLDKNQIS CIEEGAFRAL RGLE--VLTL NNNSITTIPV
201 250
ENSTTRP00000009358/1-1531 SSFNHMPKLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL
ENSP00000266058/1-1534 SSFNHMPKLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL
ENSBTAP00000053488/1-1396 SSFNHMPKLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPAGL
bmy_11413T0/1-1323 KAFRGATDLK NFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL
BACU012440/1-1372 SSFNHMPRLR TFRLHSNHLF CDCHLAWLSQ WLRQRPTIGL FTQCSGPASL
251 300
ENSTTRP00000009358/1-1531 RGLNVAEVQK SEFSCPGQGE AGHVPSCTLS SGSCPAMCTC SNGIVDCRGK
ENSP00000266058/1-1534 RGLNVAEVQK SEFSCSGQGE AGRVPTCTLS SGSCPAMCTC SNGIVDCRGK
ENSBTAP00000053488/1-1396 RGLNVAEVQK SEFSCSGQGE AGRTPSCTLS SGSCPAMCAC SNGIVDCRGK
bmy_11413T0/1-1323 RGLNVAEVQK SEFSCPGQGE AGHVPSCTLS SGSCPAMCTC SNGIVDCRGK
BACU012440/1-1372 RGLNVAEVQK SEFSCSGQGE AGHVPSCTLS SGSCPAMCTC SNGIVDCRGK
301 350
ENSTTRP00000009358/1-1531 GLTAIPANLP ETMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQISEI
ENSP00000266058/1-1534 GLTAIPANLP ETMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQIAEI
ENSBTAP00000053488/1-1396 GLTAIPANLP EAMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQISEI
bmy_11413T0/1-1323 GLTAIPANLP ETMTE----- ---------- ---------I DLSNNQILEI
BACU012440/1-1372 GLTAIPANLP ETMTEIRLEL NGIKSIPPGA FSPYRKLRRI DLSNNQISEI
351 400
ENSTTRP00000009358/1-1531 APDAFQGLRS LNSLVLYGNK ITDLPRGVFG GLFTLQLLLL NANKINCIRP
ENSP00000266058/1-1534 APDAFQGLRS LNSLVLYGNK ITDLPRGVFG GLYTLQLLLL NANKINCIRP
ENSBTAP00000053488/1-1396 APDAFQGLRS LNSLVLYGNK ITDLPQGVFG GLFTLQLLLL NANKINCIRL
bmy_11413T0/1-1323 APDAFQGLRS LNSLVLYGNK ITDLPQGVFG GLFTLQLLLL NANKINCIRP
BACU012440/1-1372 APDAFQGLRS LNSLVLYGNK ITDLPRGVFG GLFTLQLLLL NANKINCIRP
401 450
ENSTTRP00000009358/1-1531 NTFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTXXXXQ NP-ICDCNLK
ENSP00000266058/1-1534 DAFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK
ENSBTAP00000053488/1-1396 DAFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK
bmy_11413T0/1-1323 NTFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK
BACU012440/1-1372 NTFQDLQNLS LLSLYDNKIQ SLAKGTFTSL RAIQTLHLAQ NPFICDCNLK
451 500
ENSTTRP00000009358/1-1531 W-ADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT
ENSP00000266058/1-1534 WLADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT
ENSBTAP00000053488/1-1396 WLADFLRSNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGA
bmy_11413T0/1-1323 WLADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT
BACU012440/1-1372 WLADFLRTNP IETSGARCAS PRRLANKRIG QIKSKKFRCS AKEQYFIPGT
501 550
ENSTTRP00000009358/1-1531 EDYQLNSECN SDVVCPHKCR CEASMVECSG LKLTKIPERI PQATAELRLN
ENSP00000266058/1-1534 EDYQLNSECN SDVVCPHKCR CEANVVECSS LKLTKIPERI PQSTAELRLN
ENSBTAP00000053488/1-1396 EDYQLNSECN SDVVCPHKCR CEASMVECSS LKLTKIPERV PQATAELRLN
bmy_11413T0/1-1323 EDYQLNSECN SDVVCPHKCR CEASMVECSS LKLTKIPERI PQATAELRLN
BACU012440/1-1372 EDYQLNSECN SDVVCPHKCR CEASMVECSS LKLTKIPERI PQATAELRLN
551 600
ENSTTRP00000009358/1-1531 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA
ENSP00000266058/1-1534 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA
ENSBTAP00000053488/1-1396 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA
bmy_11413T0/1-1323 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA
BACU012440/1-1372 NNEISILEAT GMFKKLTHLK KINLSNNKVS EIEDGAFEGA ASVSELHLTA
601 650
ENSTTRP00000009358/1-1531 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRS VRLLSLYDNQ
ENSP00000266058/1-1534 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRN VRLLSLYDNQ
ENSBTAP00000053488/1-1396 NQLESIRSGM FRGLEGLRTL MLRNNRISCI HNDSFTGLRN VRLLSLYDNQ
bmy_11413T0/1-1323 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRS VRLLSLYDNQ
BACU012440/1-1372 NQLESIRSGM FRGLDGLRTL MLRNNRISCI HNDSFTGLRS VRLLSLYDNQ
651 700
ENSTTRP00000009358/1-1531 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRR RKIVTGNPRC
ENSP00000266058/1-1534 ITTVSPGAFD TLQSLSTLNL LANPFNCNCQ LAWLGGWLRK RKIVTGNPRC
ENSBTAP00000053488/1-1396 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRK RKIVTGNPRC
bmy_11413T0/1-1323 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRK RKIVTGNPRC
BACU012440/1-1372 IATISPGAFD TLQALSTLNL LANPFNCNCQ LAWLGDWLRK RKIVTGNPRC
701 750
ENSTTRP00000009358/1-1531 QNPDFLRQIP LQDVAVPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS
ENSP00000266058/1-1534 QNPDFLRQIP LQDVAFPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS
ENSBTAP00000053488/1-1396 QNPDFLRQIP LQDVASPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS
bmy_11413T0/1-1323 QNPDFLRQIP LQDVAVPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS
BACU012440/1-1372 QNPDFLRQIP LQDVAVPDFR CEEGQEEGGC LPRPQCPQEC ACLDTVVRCS
751 800
ENSTTRP00000009358/1-1531 NKHLQALPKG IPKNATELYL DGNQFTLVPR QLSTFKYLQL VDLSNNKISS
ENSP00000266058/1-1534 NKHLRALPKG IPKNVTELYL DGNQFTLVPG QLSTFKYLQL VDLSNNKISS
ENSBTAP00000053488/1-1396 NKHLQTLPKG IPKNVTELYL DGNQFTLVPA QLSTFKYLQL VDLSNNKISS
bmy_11413T0/1-1323 NKHLQALPKG IPKNATELYL DGNQFTLVPG QLSTFKYLQL VDLSNNKISS
BACU012440/1-1372 NKHLQALPKG IPKNATELYL DGNQFTLVPG QLSTFKYLQL VDLSNNKISS
801 850
ENSTTRP00000009358/1-1531 LSNSSFTNMS QLTTLILSYN ALQCIPPLAF QGLRSLRLLS LHGNDVSTLQ
ENSP00000266058/1-1534 LSNSSFTNMS QLTTLILSYN ALQCIPPLAF QGLRSLRLLS LHGNDISTLQ
ENSBTAP00000053488/1-1396 LSNSSFTNMS QLTTLILSYN SLQCIPPLAF QGLRSLRLLS LHGNDISTLQ
bmy_11413T0/1-1323 LSNSSFTNMS QLTT------ ---------- --------LS LHGNDVSTLQ
BACU012440/1-1372 LSNSSFTNMS QLTTLILSYN ALQCIPPLAF QGLRSLRLLS LHGNDVSTLQ
851 900
ENSTTRP00000009358/1-1531 EGIFTDVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPPD
ENSP00000266058/1-1534 EGIFADVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPQD
ENSBTAP00000053488/1-1396 EGIFADVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPLD
bmy_11413T0/1-1323 EGIFTDVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPPD
BACU012440/1-1372 EGIFTDVTSL SHLAIGANPL YCDCHLRWLS SWVKTGYKEP GIARCAGPPD
901 950
ENSTTRP00000009358/1-1531 MEGKLLLTTP AKKFECLGPP SLAVQAKCDP CLSSPCQNRG TCHNDPLGAY
ENSP00000266058/1-1534 MEGKLLLTTP AKKFECQGPP TLAVQAKCDL CLSSPCQNQG TCHNDPLEVY
ENSBTAP00000053488/1-1396 MEGKLLLTTP AKKFECQGPP TLTVQAKCDP CLSSPCQNQG TCRNDPLVGY
bmy_11413T0/1-1323 MEGKLLLTTP AKKFECRGPP TLAVQAKCDP CLSSPCQNRG TCHNDPLGVY
BACU012440/1-1372 MEGKLLLTTP AKKFECLGPP TLAVQAKCDP CLSSPCQNQG TCHNDPLGVY
951 1000
ENSTTRP00000009358/1-1531 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CHSQEGEDAG FTCSCPSGFE
ENSP00000266058/1-1534 RCACPSGYKG RDCEVSLDSC SSGPCENGGT CHAQEGEDAP FTCSCPTGFE
ENSBTAP00000053488/1-1396 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CRSQEGEDAG FTCSCPTGFE
bmy_11413T0/1-1323 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CHSQEGEDAG FTCSCPSGFE
BACU012440/1-1372 RCACPSGYKG RDCEVSLDSC SSSPCGNGGT CHSQEGEDAG FTCSCPSGFE
1001 1050
ENSTTRP00000009358/1-1531 GPTCGVNTDD CVEHSCANGG TCVDGMGSYT CQCPLQYSGT ACEQLVDFCS
ENSP00000266058/1-1534 GPTCGVNTDD CVDHACANGG VCVDGVGNYT CQCPLQYEGK ACEQLVDLCS
ENSBTAP00000053488/1-1396 GPTCGVDTDD CVEHSCANGG TCVDGVGSYT CQCPLQYSGR ACELLVDFCA
bmy_11413T0/1-1323 GPTCGVNTDD CVEHSCANGG TCVDGMGSYT CQCPLQYSGA ACEQLVDFCS
BACU012440/1-1372 GPTCGVNTDN CVEHSCANGG TCVDGMGSYT CQCPLQYSGA ACEQLVDFCS
1051 1100
ENSTTRP00000009358/1-1531 SDLNPCQHEA QCVGTPDGPR CECAPGYVGD NCTENRDDCE DHRCQNGAQC
ENSP00000266058/1-1534 PDLNPCQHEA QCVGTPDGPR CECMPGYAGD NCSENQDDCR DHRCQNGAQC
ENSBTAP00000053488/1-1396 PDLNPCQHEA QCVGTPDGPR CECAPGYAGG NCTEKQDDCR DHRCQNGAQC
bmy_11413T0/1-1323 SDLNPCQHEA QCVGTPDGPR CECAPGYAGD NCTENRDDCE DHRCQNGARC
BACU012440/1-1372 SDLNPCQHEA QCVGTPDGPR CECAPGYAGD NCTENRDDCE DHRCQNGAQC
1101 1150
ENSTTRP00000009358/1-1531 VDGVNGYSCL CAEGYSGQLC ETPPRPPAPR SPCEGTECQN GANCVDQGSQ
ENSP00000266058/1-1534 MDEVNSYSCL CAEGYSGQLC EIPPHLPAPK SPCEGTECQN GANCVDQGNR
ENSBTAP00000053488/1-1396 VDEANGYSCL CTQGYSGQLC ETPPRPPGPR SPCEGTECQN GANCVDQGNG
bmy_11413T0/1-1323 VDGVNSYSCL CAEGYSGQLC ETPPRPPAPR SPCEGTECQN GANCVDQGSQ
BACU012440/1-1372 VDGVNSYSCL CAEGYSGQLC ETPPHPPAPR SPCEGTECQN GANCVDQGSQ
1151 1200
ENSTTRP00000009358/1-1531 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQXXXXX
ENSP00000266058/1-1534 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE
ENSBTAP00000053488/1-1396 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE
bmy_11413T0/1-1323 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE
BACU012440/1-1372 PVCQCLPGFG GPECEKLLSV NFVDRDTYLQ FTDLQNWPRA NITLQVSTAE
1201 1250
ENSTTRP00000009358/1-1531 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA ETINDGQFHT
ENSP00000266058/1-1534 DNGILLYNGD NDHIAVELYQ GHVRVSYDPG SYPSSAIYSA ETINDGQFHT
ENSBTAP00000053488/1-1396 DNGILLYNGD NDHIAVELYQ GHVRVSYDPG SYPSSAIYST ETINDGQFHT
bmy_11413T0/1-1323 DNGILLYNGD DDHIAVELYQ GHVRVSYDPG SYPSSAIYSA ETINDGQFHT
BACU012440/1-1372 DNGILLYNGD DDHIAVELYQ GHVRVSYDPG SYPSSAIYSA ETINDGQFHT
1251 1300
ENSTTRP00000009358/1-1531 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA
ENSP00000266058/1-1534 VELVAFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA
ENSBTAP00000053488/1-1396 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSDAPLYVG GMPVDVNSAA
bmy_11413T0/1-1323 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA
BACU012440/1-1372 VELVTFDQMV NLSIDGGSPM TMDNFGKHYT LNSEAPLYVG GMPVDVNSAA
1301 1350
ENSTTRP00000009358/1-1531 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL
ENSP00000266058/1-1534 FRLWQILNGT GFHGCIRNLY INNELQDFTK TQMKPGVVPG CEPCRKLYCL
ENSBTAP00000053488/1-1396 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL
bmy_11413T0/1-1323 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL
BACU012440/1-1372 FRLWQILNGT SFHGCIRNLY INNELQDFTK TRMKPGVVPG CEPCRKLYCL
1351 1400
ENSTTRP00000009358/1-1531 HGICQPNATP GPVCHCEAGW EGLHCDQPAD GPCHGHKCVH GKCMPLDALS
ENSP00000266058/1-1534 HGICQPNATP GPMCHCEAGW VGLHCDQPAD GPCHGHKCVH GQCVPLDALS
ENSBTAP00000053488/1-1396 HGICQPNATP GPVCHCEAGW GGLHCDQPAD GPCHGHKCVH GKCVPLDALS
bmy_11413T0/1-1323 HGICQPNATP GPVCHCEAGW EGLHCDQPAD GPCHGHKCVH GKCMPLDALS
BACU012440/1-1372 HGICQPNATP GPVCHCEAGW EGLHCDQPAD GPCHGHKCVH GKCVPLDALS
1401 1450
ENSTTRP00000009358/1-1531 YSCQCQDGYS GALCKQAGAP ADPCGGLRCL HGHCQASATK GAHCVCHPGF
ENSP00000266058/1-1534 YSCQCQDGYS GALCNQAGAL AEPCRGLQCL HGHCQASGTK GAHCVCDPGF
ENSBTAP00000053488/1-1396 YSCQCQDGYS GALCNQAGAP ADPCEGLRCL HGHCQASATK GTYCVCDPGF
bmy_11413T0/1-1323 YSCQCQDGYS GALCNQAGAP ADPCGGLRCL HGHCQASATK GTHCVCNPGF
BACU012440/1-1372 YSCQCQDGYS GALCNQAGAP ADPCGGLRCL HGHCQASATK GAHCVCDPGF
1451 1500
ENSTTRP00000009358/1-1531 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCPGQGCC
ENSP00000266058/1-1534 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCPGQGCC
ENSBTAP00000053488/1-1396 SGELCEQESE CRGDPVRDFH QVQRGYAICR TTRPLSWVEC RGSCPGQGCC
bmy_11413T0/1-1323 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCXGQGCC
BACU012440/1-1372 SGELCEQESE CRGDPVRDFH QVQRGYAICQ TTRPLSWVEC RGSCPGQGCC
1501 1550
ENSTTRP00000009358/1-1531 Q-LRLKRRKF TFECSDGTSF AEEVEKPTKC GCAFCA
ENSP00000266058/1-1534 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCALCA
ENSBTAP00000053488/1-1396 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCALCA
bmy_11413T0/1-1323 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCAFCA
BACU012440/1-1372 QGLRLKRRKF TFECSDGTSF AEEVEKPTKC GCAFCA