KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:05:09 2014 Check: 00 ..
Name: bmy_05582T0/1-314 Len: 346 Check: 5192 Weight: 1.00
Name: ENSP00000321330/1-292 Len: 346 Check: 3300 Weight: 1.00
Name: ENSTTRP00000006886/1-249 Len: 346 Check: 5019 Weight: 1.00
Name: BACU016802/1-257 Len: 346 Check: 8193 Weight: 1.00
Name: ENSBTAP00000053494/1-293 Len: 346 Check: 4419 Weight: 1.00
//
1 50
bmy_05582T0/1-314 ------MFTD ISLFLFSFFQ C--------- ---------- -------LKQ
ENSP00000321330/1-292 MTTTR-YRPT WDLALDPLVS CKLCLGEYPV EQMTTIAQCQ CIFCTLCLKQ
ENSTTRP00000006886/1-249 MTTAR-CRPT WDLALDPLVS CKLCLGEYPV EKMTTIAQCQ CIFCTLCLKQ
BACU016802/1-257 MSTAR-CRPT WDLALDPLVS CKLCLGEYPV EQMTTIAQCQ CIFCTL----
ENSBTAP00000053494/1-293 MSAARACRPS WDLALDPLVS CKLCLGEYPV EQMTTIAQCQ CVFCTLCLKQ
51 100
bmy_05582T0/1-314 YVELLIKEGL ETAISCPDAA CPKQGHLQEN EARSAGETGV HEHGLLSGSG
ENSP00000321330/1-292 YVELLIKEGL ETAISCPDAA CPKQGHLQEN E--------- ----------
ENSTTRP00000006886/1-249 YVELLIKEGL ETAISCPDAA CPKQGHLQEN E--------- ----------
BACU016802/1-257 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000053494/1-293 YVELLIKEGL ETAISCPDAA CPKQGHLQEN E--------- ----------
101 150
bmy_05582T0/1-314 IECMVAAEIM QRYKKLQFER EVLLDPCRTW CPASTCQAVC QLQEMGLQTP
ENSP00000321330/1-292 IECMVAAEIM QRYKKLQFER EVLFDPCRTW CPASTCQAVC QLQDVGLQTP
ENSTTRP00000006886/1-249 IECMVAAEIM QKYKKLQFER EVLLDPCRTW CPASTCQAVC QLQEMGLQTP
BACU016802/1-257 IECMVAAEIM QRYKKLQFER EVLLDPCRTW CPASTCQAVC QLQETGLQTP
ENSBTAP00000053494/1-293 IECMVAAEIM QRYKKLQFER EVLLDPCRTW CPASTCQAVC QLQEMGLHTP
151 200
bmy_05582T0/1-314 QLVQCKACDT EFCSACKASW HPGQGCPETM PITFLPGETR YARGTDCRPG
ENSP00000321330/1-292 QPVQCKACRM EFCSTCKASW HPGQGCPETM PITFLPGET- ----------
ENSTTRP00000006886/1-249 QLVQCKACDT EFCSACKASW HPGQGCPETM PITFLPGET- ----------
BACU016802/1-257 QLVQCQACDA EFCSACKASW HPGQGCPETM PITFLPGET- ----------
ENSBTAP00000053494/1-293 QLVQCKACDT EFCSACKASW HPGQGCPETM PITFLPGET- ----------
201 250
bmy_05582T0/1-314 EGISLLPQCA SGEDRPAPRF SLSSSAFPLE EDDAPIKRCP KCKVYIERDE
ENSP00000321330/1-292 ---------- ---------- ---SAAFKME EDDAPIKRCP KCKVYIERDE
ENSTTRP00000006886/1-249 ---------- ---------- ---SSTFQLE EDDAPIKRCP KCKVYIERDE
BACU016802/1-257 ---------- ---------- ---SSAFPLE EDDVPIKRCP KCKVYIERDE
ENSBTAP00000053494/1-293 ---------- ---------- ---SSAFKLD EDDAPIKRCP KCKVYIERDE
251 300
bmy_05582T0/1-314 GCAQMMCKSC KHAFCWYCLE SLDDDFLLIH YDKGPCRNKL GHSRASVIWH
ENSP00000321330/1-292 GCAQMMCKNC KHAFCWYCLE SLDDDFLLIH YDKGPCRNKL GHSRASVIWH
ENSTTRP00000006886/1-249 GCAQMMCKNC KHAFCWYCLE SLDDDFLLIH YDKGPCRNKL GHSRASVIWH
BACU016802/1-257 GCAQMMCKNC KHAFCWYCLE SLDDDFLLIH YDKGPCRNKL GHSRASVIWH
ENSBTAP00000053494/1-293 GCAQMMCKNC KHAFCWYCLE SLDDDFLLIH YDKGPCRNKL GHSRASVIWH
301 350
bmy_05582T0/1-314 RTQVVGIFAG FGLLLLVASP FLLLATPFVL CCKCKCSKGD DDPLPT
ENSP00000321330/1-292 RTQVVGIFAG FGLLLLVASP FLLLATPFVL CCKCKCSKGD DDPLPT
ENSTTRP00000006886/1-249 RTQ------- ---------- ---------- ---------- ------
BACU016802/1-257 RTQVVGIFAG FGLLLLVASP FLLLATPFVL CCKCKCSKGD DDPLPT
ENSBTAP00000053494/1-293 RTQVVGIFAG FGLLLLVASP FLLLATPFVL CCKCKCSKGD DDPLPT