KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:11 2014 Check: 00 .. Name: ENSTTRP00000005398/1-1338 Len: 1505 Check: 3275 Weight: 1.00 Name: BACU014289/1-342 Len: 1505 Check: 3265 Weight: 1.00 Name: bmy_05174T0/1-1390 Len: 1505 Check: 700 Weight: 1.00 Name: ENSP00000357196/1-1446 Len: 1505 Check: 1763 Weight: 1.00 Name: ENSBTAP00000053498/1-1445 Len: 1505 Check: 2531 Weight: 1.00 // 1 50 ENSTTRP00000005398/1-1338 MD-TAAAALP AYVALLLLSP WPLLGSAQGQ FSAGGCTFDD GPGVCDYHQD BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 ---------- ---------- ---------- ---------- ---------- ENSP00000357196/1-1446 MDTTAAAALP AFVALLLLSP WPLLGSAQGQ FSAGGCTFDD GPGACDYHQD ENSBTAP00000053498/1-1445 MD-TAAAALP TFVALLLLSP WPLLGSAQGQ FSAGGCTFDD GPGACDYHQD 51 100 ENSTTRP00000005398/1-1338 LYDDFEWVHV SAQEPHYLPP EMPQGSYMIV DSSDHDPGEK ARLQLPTMKE BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 ---------- ---------- ---------- ---------- -------MKE ENSP00000357196/1-1446 LYDDFEWVHV SAQEPHYLPP EMPQGSYMIV DSSDHDPGEK ARLQLPTMKE ENSBTAP00000053498/1-1445 LYDDFEWVHV SAQEPHYLPP EMPQGSYMIV DSSDHDPGEK ARLQLPTMKE 101 150 ENSTTRP00000005398/1-1338 NDTHCIDFSY LLYSQKGLNP GTLNILVRVN KGPLANPIWN VTGFTGRDWL BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 NDTHCIDFSY LLYSQKGLNP GTLNILVRVN KGPLANPIWN VTGFTGRDWL ENSP00000357196/1-1446 NDTHCIDFSY LLYSQKGLNP GTLNILVRVN KGPLANPIWN VTGFTGRDWL ENSBTAP00000053498/1-1445 NDTHCIDFSY LLYSQKGLNP GTLNILVRVN KGPLANPIWN VTGFTGRDWL 151 200 ENSTTRP00000005398/1-1338 RAELAVSTFW PNEYQ----- ---------- ---------- --VIFEAEFS BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 RAELAVSTFW PNEYQWVASN PLFALCTSGS KLDKFCVTYA NKVIFEAEVS ENSP00000357196/1-1446 RAELAVSTFW PNEYQ----- ---------- ---------- --VIFEAEVS ENSBTAP00000053498/1-1445 RAELAVSTFW PNEYQ----- ---------- ---------- --VIFEAEVS 201 250 ENSTTRP00000005398/1-1338 GGRSGYIAID DIQVLSYPCD KSPHFLRLGD VEVNAGQNAT FQCIATGRDA BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 GGRSGYIAID DIQVLSYPCD KSPHFLRLGD VEVNAGQNAT FQCIATGRDA ENSP00000357196/1-1446 GGRSGYIAID DIQVLSYPCD KSPHFLRLGD VEVNAGQNAT FQCIATGRDA ENSBTAP00000053498/1-1445 GGRSGYIAID DIQVLSYPCD KSPHFLRLGD VEVNAGQNAT FQCIATGRDA 251 300 ENSTTRP00000005398/1-1338 VHNKLWLQRR NGEDIPVAQT KNINHRRFAA SFRLQEVTKT DQDLYRCVTQ BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 VHNKLWLQRR NGEDIPVAQT KNINHRRFAA SFRLQEVTKT DQDLYRCVTQ ENSP00000357196/1-1446 VHNKLWLQRR NGEDIPVAQT KNINHRRFAA SFRLQEVTKT DQDLYRCVTQ ENSBTAP00000053498/1-1445 VHNKLWLQRR NGEDIPVAQT KNINHRRFAA SFRLQEVTKT DQDLYRCVTQ 301 350 ENSTTRP00000005398/1-1338 SERGSGVSNF AQLIVREPPR PIAPPQLLGV GPTYLLIQLN ANSIIGDGPI BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 SERGSGVSNF AQLIVREPPR PIAPPQLLGV GPTYLLIQLN ANSIIGDGPI ENSP00000357196/1-1446 SERGSGVSNF AQLIVREPPR PIAPPQLLGV GPTYLLIQLN ANSIIGDGPI ENSBTAP00000053498/1-1445 SERGSGVSNF AQLIVREPPR PIAPPQLLGV GPTYLLIQLN ANSIIGDGPI 351 400 ENSTTRP00000005398/1-1338 ILKEVEYRMT SGSWTETHAV NAPTYKLWHL DPDTEYEIRV LLTRPGEGGT BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 ILKEVEYRMT SGSWTETHAV NAPTYKLWHL DPDTEYEIRV LLTRPGEGGT ENSP00000357196/1-1446 ILKEVEYRMT SGSWTETHAV NAPTYKLWHL DPDTEYEIRV LLTRPGEGGT ENSBTAP00000053498/1-1445 ILKEVEYRMT SGSWTETHAV NAPTYKLWHL DPDTEYEIRV LLTRPGEGGT 401 450 ENSTTRP00000005398/1-1338 GLPGPPLITR TKCAEPMRTP KTLKIAEIQA RRIAVDWESL GYNITRCHTF BACU014289/1-342 ---------- ------MRTP KTLKIAEIQA RRIAVDWESL GYNITRCHTF bmy_05174T0/1-1390 GLPGPPLITR TKCAEPMRTP KTLKIAEIQA RRIAVDWESL GYNITRCHTF ENSP00000357196/1-1446 GLPGPPLITR TKCAEPMRTP KTLKIAEIQA RRIAVDWESL GYNITRCHTF ENSBTAP00000053498/1-1445 GLPGPPLITR TKCAEPMRTP KTLKIAEIQA RRIAVDWESL GYNITRCHTF 451 500 ENSTTRP00000005398/1-1338 NVTICYHYFR GHNESKADCL DMDPKAPQHV VNHLPPYTNV SLKMILTNPE BACU014289/1-342 NVTICYHYFH GHNESKADCL DMDPKAPQHV VNHLPPYTNV SLKMILTNPE bmy_05174T0/1-1390 NVTICYHYFH GHNESKADCL DMDPKAPQHV VNHLPPYTNV SLKMILTNPE ENSP00000357196/1-1446 NVTICYHYFR GHNESKADCL DMDPKAPQHV VNHLPPYTNV SLKMILTNPE ENSBTAP00000053498/1-1445 NVTICYHYFR GHNESKADCL DMDPKAPQHV VNHLPPYTNV SLKMILTNPE 501 550 ENSTTRP00000005398/1-1338 GRKESEETII QTDEDVPGPV PVNSLQGTSF ENKIFLNWKE PLDPNGIITQ BACU014289/1-342 GRKESEETII QTDEDVPGPV PVNSLQGTSF ENKIFLNWKE PLDSNGIITQ bmy_05174T0/1-1390 GRKESEETII QTDEDVPGPV PVNSLQGTSF ENKIFLNWKE PLDPNGIITQ ENSP00000357196/1-1446 GRKESEETII QTDEDVPGPV PVKSLQGTSF ENKIFLNWKE PLDPNGIITQ ENSBTAP00000053498/1-1445 GRKESEETII QTDEDVPGPV PVNSLQGTSF ENKIFLNWKE PLDPNGIITQ 551 600 ENSTTRP00000005398/1-1338 YEVSYSSIRS FDPAVPVAGP PQTVSNLWNS THHVFMHLHP GTTYQFFIRA BACU014289/1-342 YEVSYSSIRS FDPAVPVAGP PQTVSNLWNS THHVFMHLHP GTTYQFFIRA bmy_05174T0/1-1390 YEVSYSSIRS FDPAVPVAGP PQTVSNLWNS THHVFMHLHP GTTYQFFIRA ENSP00000357196/1-1446 YEISYSSIRS FDPAVPVAGP PQTVSNLWNS THHVFMHLHP GTTYQFFIRA ENSBTAP00000053498/1-1445 YEVSYSSIRS FDPAVPVAGP PQTVSNLWNS THHVFMHLHP GTTYQFFIRA 601 650 ENSTTRP00000005398/1-1338 STVKGFGPAT AINVTTNISA PTLPDYEGVD ASLNETATTI TVLLRPAQAK BACU014289/1-342 STVKGFGPAT AINVTTNISA PTLPDYEGVD ASLNETATTI TVLLRPAQAK bmy_05174T0/1-1390 STVKGFGPAT AINVTTNISA PTLPDYEGVD ASLNETATTI TVLLRPAQAK ENSP00000357196/1-1446 STVKGFGPAT AINVTTNISA PTLPDYEGVD ASLNETATTI TVLLRPAQAK ENSBTAP00000053498/1-1445 STVKGFGPAT AINVTTNISA PTLPDYEGID ASLNETATTI TVLLRPAQAK 651 700 ENSTTRP00000005398/1-1338 GAPISAYQIV VEELHPHRTK REARAMECYQ VPVTY-NAMN GGAP-YFAAE BACU014289/1-342 GAPISAYQIV VEELHPHRTK REARAMECYQ VPVTYQNAMN GGAPYYFAAE bmy_05174T0/1-1390 GAPISAYQIV VEELHPHRTK REARAMECYQ VPVTYQNAMN GGAPYYFAAE ENSP00000357196/1-1446 GAPISAYQIV VEELHPHRTK REAGAMECYQ VPVTYQNAMS GGAPYYFAAE ENSBTAP00000053498/1-1445 GAPISAYQIV VEELHPHRTK RETGAMECYQ VPVTYQNAMS GGAPYYFAAE 701 750 ENSTTRP00000005398/1-1338 LPPGNLPEPA PFTVGDNXXX XXXXXXXXXX XXXXXXXXXX XXXXXXETKT BACU014289/1-342 LPPGNLPEPA PFTVGDNRTY QGFWNPPLAP RKGYNIYFQA MSSVEK---- bmy_05174T0/1-1390 LPPGNLPEPA PFTVGDNRTY QGFWNPPLAP RKGYNIYFQA MSSVEKASEH ENSP00000357196/1-1446 LPPGNLPEPA PFTVGDNRTY QGFWNPPLAP RKGYNIYFQA MSSVEKETKT ENSBTAP00000053498/1-1445 LPPGNLPEPA PFTVGDNRTY QGFWNPPLAP RKGYNIYFQA MSSVEKETKT 751 800 ENSTTRP00000005398/1-1338 ----QCVRIA TKAAATEEPE VIPDPAKQTD RVVKIAGISA GILVFVLLLL BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 WEFFESSLAD KKAAATEEPE VIPDPAKQTD RVVKIAGISA GILVFTLLLL ENSP00000357196/1-1446 ----QCVRIA TKAAATEEPE VIPDPAKQTD RVVKIAGISA GILVFILLLL ENSBTAP00000053498/1-1445 ----QCVRIA TKAAATEEPE VIPDPAKQTD RVVKIAGISA GILVFILLLL 801 850 ENSTTRP00000005398/1-1338 VVILIVKKSK LAKKRKDALG NTRQEMTHMV NAMDRSYADQ STLHAEDPLS BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 VVVLIVKKSK LAKKRKDALG NTRQEMTHMV NAMDRSYADQ STLHAEDPLS ENSP00000357196/1-1446 VVILIVKKSK LAKKRKDAMG NTRQEMTHMV NAMDRSYADQ STLHAEDPLS ENSBTAP00000053498/1-1445 VVILVVKKSK LAKKRKDAMG NTRQEMTHMV NAMDRSYADQ STLHAEDPLS 851 900 ENSTTRP00000005398/1-1338 ITFMDQHNFS PRLPNDPLVP TAVLDENHSA TAESSRLLDV PRYLCEGTES BACU014289/1-342 VSFLQDFAFS ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 ITFMDQHNFS PRY------- -----ENHSA TAESSRLLDV PRYLCEGTES ENSP00000357196/1-1446 ITFMDQHNFS PRY------- -----ENHSA TAESSRLLDV PRYLCEGTES ENSBTAP00000053498/1-1445 ITFMDQHNFS PRY------- -----ENHSA TAESSRLLDV PRYLCEGTES 901 950 ENSTTRP00000005398/1-1338 PYQTGQLHPA IRVADLLQHI NLMKTSDSYG FKEEYESFFE GQSASWDVAK BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 PYQTGQLHPA IRVADLLQHI NLMKTSDSYG FKEEYESFFE GQSASWDVAK ENSP00000357196/1-1446 PYQTGQLHPA IRVADLLQHI NLMKTSDSYG FKEEYESFFE GQSASWDVAK ENSBTAP00000053498/1-1445 PYQTGQLHPA IRVADLLQHI NLMKTSDSYG FKEEYESFFE GQSASWDVAK 951 1000 ENSTTRP00000005398/1-1338 KDQNRAKNRY GNIIAYDHSR VILQPVEDDP SSDYINANYI DIWLYRDGYQ BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 KDQNRAKNRY GNIIAYDHSR VILQPVEDDP SSDYINANYI ------DGYQ ENSP00000357196/1-1446 KDQNRAKNRY GNIIAYDHSR VILQPVEDDP SSDYINANYI DIWLYRDGYQ ENSBTAP00000053498/1-1445 KDQNRAKNRY GNIIAYDHSR VILQPVEDDP SSDYINANYI DIWLYRDGYQ 1001 1050 ENSTTRP00000005398/1-1338 RPSHYIATQG PVHETVYDFW RMIWQEQSAC IVMVTNLVEV GRVKCYKYWP BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 RPSHYIATQG PVHETVYDFW RMIWQEQSAC IVMVTNLVEV GRVKCYKYWP ENSP00000357196/1-1446 RPSHYIATQG PVHETVYDFW RMIWQEQSAC IVMVTNLVEV GRVKCYKYWP ENSBTAP00000053498/1-1445 RPSHYIATQG PVHETVYDFW RMIWQEQSAC IVMVTNLVEV GRVKCYKYWP 1051 1100 ENSTTRP00000005398/1-1338 DDTEVYGDFK VTCVEMEPLA EYVVRTFTLE RRGYSEMREV KQFHFTGWPD BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 DDTEVYGDFK VTCVEMEPLA EYVVRTFTLE RRGYSEMREV KQFHFTGWPD ENSP00000357196/1-1446 DDTEVYGDFK VTCVEMEPLA EYVVRTFTLE RRGYNEIREV KQFHFTGWPD ENSBTAP00000053498/1-1445 DDTEVYGDFK VTCVEMEPLA EYVVRTFTLE RRGYNEIREV KQFHFTGWPD 1101 1150 ENSTTRP00000005398/1-1338 HGVPYHATGL LSFIRRVKFS NPPSAGPIVV HCSAGAGRTG CYIVIDIMLD BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 HGVPYHATGL LSFIRRVKFS NPPSAGPIVV HCSAGAGRTG CYIVIDIMLD ENSP00000357196/1-1446 HGVPYHATGL LSFIRRVKLS NPPSAGPIVV HCSAGAGRTG CYIVIDIMLD ENSBTAP00000053498/1-1445 HGVPYHATGL LSFIRRVKFS NPPSAGPIVV HCSAGAGRTG CYIVIDIMLD 1151 1200 ENSTTRP00000005398/1-1338 MAEREGVVDI YNCVKALRSR RINMVQTEEQ YIFIHDAILE ACLCGETAIP BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 MAEREGVVDI YNCVKALRSR RINMVQTEEQ YIFIHDAILE ACLCGETAIP ENSP00000357196/1-1446 MAEREGVVDI YNCVKALRSR RINMVQTEEQ YIFIHDAILE ACLCGETAIP ENSBTAP00000053498/1-1445 MAEREGVVDI YNCVKALRSR RINMVQTEEQ YIFIHDAILE ACLCGETAIP 1201 1250 ENSTTRP00000005398/1-1338 VCEFKAAYFD MIRIDSQTNS SHLKDEFQTL NSVTPRLQAE DCSIACLPRN BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 VCEFKAAYFD MIRIDSQTNS SHLKDEFQTL NSVTPRLQAE DCSIACLPRN ENSP00000357196/1-1446 VCEFKAAYFD MIRIDSQTNS SHLKDEFQTL NSVTPRLQAE DCSIACLPRN ENSBTAP00000053498/1-1445 VCEFKAAYFD MIRIDSQTNS SHLKDEFQTL NSVTPRLQAE DCSIACLPRN 1251 1300 ENSTTRP00000005398/1-1338 HDKNRFMDML PPDRCLPFLI TIDGESSNYI NAALMDSYRQ PAAFIVTQYP BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 HDKNRFMDML PPDRCLPFLI TIDGESSNYI NAALMDSYRQ PAAFIVTQYP ENSP00000357196/1-1446 HDKNRFMDML PPDRCLPFLI TIDGESSNYI NAALMDSYRQ PAAFIVTQYP ENSBTAP00000053498/1-1445 HDKNRFMDML PPDRCLPFLI TIDGESSNYI NAALMDSYRQ PAAFIVTQYP 1301 1350 ENSTTRP00000005398/1-1338 LPNTVKDFWR LVYDYGCTSI VMLNEVDLSQ ---------- ------GCPQ BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 LPNTVKDFWR LVYDYGCTSI VMLNEVDLSQ VNGYRLLLCA YAQLNKGCPQ ENSP00000357196/1-1446 LPNTVKDFWR LVYDYGCTSI VMLNEVDLSQ ---------- ------GCPQ ENSBTAP00000053498/1-1445 LPNTVKDFWR LVYDYGCTSI VMLNEVDLSQ ---------- ------GCPQ 1351 1400 ENSTTRP00000005398/1-1338 YWPEEGMLRY GPIQVECMSC SMDCDVINRI FRICNLTR-- ---------- BACU014289/1-342 ---------- ---------- ---------- -----LT--- ---------- bmy_05174T0/1-1390 YWPEEGMLRY GPIQVECMSC SMDCDVINRI FRICNLTRPQ EGYLMVQQFQ ENSP00000357196/1-1446 YWPEEGMLRY GPIQVECMSC SMDCDVINRI FRICNLTRPQ EGYLMVQQFQ ENSBTAP00000053498/1-1445 YWPEEGTLRY GPIQVECMSC SMDCDVINRI FRICNLTRPQ EGYLMVQQFQ 1401 1450 ENSTTRP00000005398/1-1338 ---------- ---------- ---------- ---------- ---------- BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 YLGWASHREV PGSKRSFLKL ILQVEKWQEE CEDGEGRTII HCLNGGGRSG ENSP00000357196/1-1446 YLGWASHREV PGSKRSFLKL ILQVEKWQEE CEEGEGRTII HCLNGGGRSG ENSBTAP00000053498/1-1445 YLGWASHREV PGSKRSFLKL ILQVEKWQEE CEEGEGRTII HCLNGGGRSG 1451 1500 ENSTTRP00000005398/1-1338 ---------- ---------- ---------- ---------- ---------- BACU014289/1-342 ---------- ---------- ---------- ---------- ---------- bmy_05174T0/1-1390 MFCAIGIVVE MVKRQNVVDV FHAVKTLRNS KPNMVEAPEQ YRFCYDVALE ENSP00000357196/1-1446 MFCAIGIVVE MVKRQNVVDV FHAVKTLRNS KPNMVEAPEQ YRFCYDVALE ENSBTAP00000053498/1-1445 MFCAIGIVVE MVKRQNVVDV FHAVKTLRNS KPNMVEAPEQ YRFCYDVALE 1501 1550 ENSTTRP00000005398/1-1338 ----- BACU014289/1-342 ----- bmy_05174T0/1-1390 YLESS ENSP00000357196/1-1446 YLESS ENSBTAP00000053498/1-1445 YLESS