KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:12 2014 Check: 00 .. Name: ENSBTAP00000053499/1-1202 Len: 1621 Check: 1137 Weight: 1.00 Name: bmy_05126T0/1-1201 Len: 1621 Check: 2016 Weight: 1.00 Name: BACU013207/1-1559 Len: 1621 Check: 2683 Weight: 1.00 Name: ENSP00000367406/1-1199 Len: 1621 Check: 5386 Weight: 1.00 Name: ENSTTRP00000000392/1-1196 Len: 1621 Check: 1427 Weight: 1.00 // 1 50 ENSBTAP00000053499/1-1202 ---------- ---------- ---------- ---------- -MPPTGSDPA bmy_05126T0/1-1201 ---------- ---------- ---------- ---------- -MPPTGLEPA BACU013207/1-1559 MRRTRDEVDA TLQIAKLNAA ELLPTVHCLG FGPGASAAAG DFCLLELEPA ENSP00000367406/1-1199 ---------- ---------- ---------- ---------- -MPLTGVEPA ENSTTRP00000000392/1-1196 ---------- ---------- ---------- ---------- -MPPTGLEPA 51 100 ENSBTAP00000053499/1-1202 RMNRK----- ---KGDK--- ---------- ---------- -----GFESP bmy_05126T0/1-1201 RMNRK----- ---KGDK--- ---------- ---------- -----GFESP BACU013207/1-1559 LCQQLEAGHS LVIRGDKDEN AVLCSKDKTY DMKIADTSNM LLFIPGCKTP ENSP00000367406/1-1199 RMNRK----- ---KGDK--- ---------- ---------- -----GFESP ENSTTRP00000000392/1-1196 RMNRK----- ---KGDK--- ---------- ---------- -----GFESP 101 150 ENSBTAP00000053499/1-1202 RPYKLT---- ---------- ---------- ---------- ---------- bmy_05126T0/1-1201 RPYKLT---- ---------- ---------- ---------- ---------- BACU013207/1-1559 DQMKMEETHC NIIHTEIFGF SNNYWELRRC RPKLKKLKKL LMENTYEGPD ENSP00000367406/1-1199 RPYKLT---- ---------- ---------- ---------- ---------- ENSTTRP00000000392/1-1196 RPYKXX---- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000053499/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_05126T0/1-1201 ---------- ---------- ---------- ---------- ---------- BACU013207/1-1559 SQKEKDSNHS KYTTEDLLDQ IQASEEEIMA QLQVLNACEI GGYWRILEFD ENSP00000367406/1-1199 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000392/1-1196 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000053499/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_05126T0/1-1201 ---------- ---------- ---------- ---------- ---------- BACU013207/1-1559 YEMKLLNHIT QLVDSESWSF SKVPLNTCLQ ELGPLETEEM IGHCLKCYGK ENSP00000367406/1-1199 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000392/1-1196 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000053499/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_05126T0/1-1201 ---------- ---------- ---------- ---------- ---------- BACU013207/1-1559 KYTEEGEVYF ELSADKICRA TAQMLLQNAV KFNLAEFQEV WQQSVPEGVM ENSP00000367406/1-1199 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000392/1-1196 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000053499/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_05126T0/1-1201 ---------- ---------- ---------- ---------- ---------- BACU013207/1-1559 TRLDQLKVRG ERQDVGWLAQ SGVGVRSISV TEARRRQLTE PNRGSELEAL ENSP00000367406/1-1199 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000392/1-1196 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000053499/1-1202 ---------- ---------- ---------- ----HQVVCI NNINFQRKSV bmy_05126T0/1-1201 ---------- ---------- ---------- ----HQVVCI NNINFQRKSV BACU013207/1-1559 AAADRAGPGV GAEGAPAAGC DCWVRGGAGS VSCRRPVVCI NNINFQRKSV ENSP00000367406/1-1199 ---------- ---------- ---------- ----HQVVCI NNINFQRKSV ENSTTRP00000000392/1-1196 ---------- ---------- ---------- ----XXXXCI NNINFQRKIC 401 450 ENSBTAP00000053499/1-1202 VGFVELTIFP TVANLNRIKL NSKQCRIYRV RINDLEAAFI YNDPTLEVCH bmy_05126T0/1-1201 VGFVELTIFP TVANLNRIKL NSKQCRIYRV RINDLEAAFI YNDPTLEVCH BACU013207/1-1559 VGFVELTIFP TVANLNRIKL NSKQCRIYRV RINDLEAAFI YNDPTLEVCH ENSP00000367406/1-1199 VGFVELTIFP TVANLNRIKL NSKQCRIYRV RINDLEAAFI YNDPTLEVCH ENSTTRP00000000392/1-1196 VGFVELTIFP TVANLNRIKL NSKQCRIYRV RINDLEAAFI YNDPTLEVCH 451 500 ENSBTAP00000053499/1-1202 SESKQRNLNY FSNAYAAAVS AVDPDAGNGE LCIKVPSELW KHVDELKVLK bmy_05126T0/1-1201 NESKQRNLNY FSNAYAAAVS AVDPDAGNGE LCIKVPSELW KHVDELKVLK BACU013207/1-1559 NESKQRNLNY FSNAYAAAVS AVDPDAGNGE LCIKVPSELW KHVDELKVLK ENSP00000367406/1-1199 SESKQRNLNY FSNAYAAAVS AVDPDAGNGE LCIKVPSELW KHVDELKVLK ENSTTRP00000000392/1-1196 NESKQRNLNY FSNAYAAAVS AVDPDAGNGE LCIKVPSELW KHVDELKVLK 501 550 ENSBTAP00000053499/1-1202 IHINFSLDQP KGGLHFVVPS VEGSMAERGA HVFSCGYQNS TRFWFPCVDS bmy_05126T0/1-1201 IHINFSLDQP KGGLHFVVPS VEGSMAERGA HVFSCGYQNS TRFWFPCVDS BACU013207/1-1559 IHINFSLDQP KGGLHFVVPS VEGSMAERGA HVFSCGYQNS TRFWFPCVDS ENSP00000367406/1-1199 IHINFSLDQP KGGLHFVVPS VEGSMAERGA HVFSCGYQNS TRFWFPCVDS ENSTTRP00000000392/1-1196 IHINFSLDQP KGGLHFVVPS VEGSMAERGA HVFSCGYQNS TRFWFPCVDS 551 600 ENSBTAP00000053499/1-1202 YSELCTWKLE FTVDAAMVAV SNGDLVETVY THDMRKKTFH YMLTIPTSAS bmy_05126T0/1-1201 YSELCTWKLE FTVDAAMVAV SSGDLVETVY THDMRKKTFH YMLTIPTAAS BACU013207/1-1559 YSELCTWKLE FTVDAAMVAV SSGDLVETVY THDMRKKTFH YMLTIPTAAS ENSP00000367406/1-1199 YSELCTWKLE FTVDAAMVAV SNGDLVETVY THDMRKKTFH YMLTIPTAAS ENSTTRP00000000392/1-1196 YSELCTWKLE FTVDAAMVAV SNGDLVETVY THDMRKKTFH YMLTIPTAAS 601 650 ENSBTAP00000053499/1-1202 NISLAIGPFE ILVDPYMHEV THFCLPQLLP LLKHTTSYLH EVFEFYEEIL bmy_05126T0/1-1201 NISLAIGPFE ILVDPYMHEV THFCLPQLLP LLKHTTSYLH EVFEFYEEIL BACU013207/1-1559 NISLAIGPFE ILVDPYMHEV THFCLPQLLP LLKHTTSYLH EVFEFYEEIL ENSP00000367406/1-1199 NISLAIGPFE ILVDPYMHEV THFCLPQLLP LLKHTTSYLH EVFEFYEEIL ENSTTRP00000000392/1-1196 NISLAIGPFE ILVDPYMHEV THFCLPQLLP LLKHTTSYLH EVFEFYEEIL 651 700 ENSBTAP00000053499/1-1202 TCRYPYSCFK TVFIDEAYVE VAAYASMSIF STNLLHSAMI IDETPLTRRC bmy_05126T0/1-1201 TCRYPYSCFK TVFIDEAYVE VAAYASMSIF STNLLHSAMI IDETPLTRRC BACU013207/1-1559 TCRYPYSCFK TVFIDEAYVE VAAYASMSIF STNLLHSAMI IDETPLTRRC ENSP00000367406/1-1199 TCRYPYSCFK TVFIDEAYVE VAAYASMSIF STNLLHSAMI IDETPLTRRC ENSTTRP00000000392/1-1196 TCRYPYSCFK TVFIDEAYVE VAAYASMSIF STNLLHSAMI IDETPLTRRC 701 750 ENSBTAP00000053499/1-1202 LAQSLAQQFF GCFISRMSWS DEWVLKGISG YIYGLWMKKT FGVNEYRHWI bmy_05126T0/1-1201 LAQSLAQQFF GCFISRMSWS DEWVLKGISG YIYGLWMKKT FGVNEYRHWI BACU013207/1-1559 LAQSLAQQFF GCFISRMSWS DEWVLKGISG YIYGLWMKKT FGVNEYRHWI ENSP00000367406/1-1199 LAQSLAQQFF GCFISRMSWS DEWVLKGISG YIYGLWMKKT FGVNEYRHWI ENSTTRP00000000392/1-1196 LAQSLAQQFF GCFISRMSWS DEWVLKGISG YIYGLWMKKT FGVNEYRHWI 751 800 ENSBTAP00000053499/1-1202 KEELDKIVAY ELKTGGVLLH PIFGGGKEKD NPAPHPHFSI KHPHTLSWEY bmy_05126T0/1-1201 KEELDKIVAY ELKTGGVLLH PIFGGGKEKD NPASHLHFSI KHPHTLSWEY BACU013207/1-1559 KEELDKIVAY ELKTGGVLLH PIFGGGKEKD NPASHLHFSI KHPHTLSWEY ENSP00000367406/1-1199 KEELDKIVAY ELKTGGVLLH PIFGGGKEKD NPASHLHFSI KHPHTLSWEY ENSTTRP00000000392/1-1196 KEELDKIVAY ELKTGGVLLH PIFGGGKEKD NPASHLHFSI KHPHTLSWEY 801 850 ENSBTAP00000053499/1-1202 YTMFQCKAHL VMRLIENRIS MEFMLQ---- ---------V FNKLLSLAST bmy_05126T0/1-1201 YTMFQCKAHL VMRLIENRIS MEFMLQVSIK ELNNCKERSV FNKLLSLAST BACU013207/1-1559 YTMFQCKAHL VMRLIENRIS MEFMLQ---- ---------V FNKLLSLAST ENSP00000367406/1-1199 YSMFQCKAHL VMRLIENRIS MEFMLQ---- ---------V FNKLLSLAST ENSTTRP00000000392/1-1196 YTMFQCKAHL VMRLIENRIS MEFMLQ---- ---------V FNKLLSLAST 851 900 ENSBTAP00000053499/1-1202 ASSQKFQSHM WSQMLVSTSG FLKSISNVSG KDIQPLIKQW FCRDQSGVVK bmy_05126T0/1-1201 ASSQKFQSHM WSQMLVSTSG FLKSISNVSG KDIQPLIKQW V--DQSGVVK BACU013207/1-1559 ASSQKFQSHM WSQMLVSTSG FLKSISNVSG KDIQPLIKQW V--DQSGVVK ENSP00000367406/1-1199 ASSQKFQSHM WSQMLVSTSG FLKSISNVSG KDIQPLIKQW V--DQSGVVK ENSTTRP00000000392/1-1196 ASSQKFQSHM WSQMLVSTSG FLKSISNVSG KDIQPLIKQW V--DQSG-VK 901 950 ENSBTAP00000053499/1-1202 FYGSFAFNRK RNVLELEIKQ DYTSPGTQKY VGPLKVTVQE LDGSFNHTLQ bmy_05126T0/1-1201 FYGSFAFNRK RNVLELEIKQ DYTSPGTQKY VGPLKVTVQE LDGSFNHTLQ BACU013207/1-1559 FYGSFAFNRK RNVLELEIKQ DYTSPGTQKY VGPLKVTVQE LDGSFNHTLQ ENSP00000367406/1-1199 FYGSFAFNRK RNVLELEIKQ DYTSPGTQKY VGPLKVTVQE LDGSFNHTLQ ENSTTRP00000000392/1-1196 FYG-FAF-RK RNVLELEIKQ DYTSPGTQKY VGPLKVTVQE LDGSFNHTLQ 951 1000 ENSBTAP00000053499/1-1202 IEENSLKHDI PCHSKSRRNK KKKIPLMNGE EVDMDLSAMD ADSPLLWIRI bmy_05126T0/1-1201 IEENSLKHDI PCHSKSRRNK KKKIPLMNGE EVDMDLSAMD ADSPLLWIRI BACU013207/1-1559 IEENSLKHDI PCHSKSRRNK KKKIPLMNGE EVDMDLSAMD ADSPLLWIRI ENSP00000367406/1-1199 IEENSLKHDI PCHSKSRRNK KKKIPLMNGE EVDMDLSAMD ADSPLLWIRI ENSTTRP00000000392/1-1196 IEENSLKHDI PCHSKSRRNK KKKIPLMNGE EVDMDLSAMD ADSPLLWIRI 1001 1050 ENSBTAP00000053499/1-1202 DPDMAVLRKV DSEQADFMWQ YQLRYERDVV AQQEAISALE RFPTPASRLA bmy_05126T0/1-1201 DPDMSVLRKV EFEQADFMWQ YQLRYERDVV AQQESILALE KFPTPASRLA BACU013207/1-1559 DPDMSVLRKV EFEQADFMWQ YQLRYERDVV AQQESILALE KFPTPASRLA ENSP00000367406/1-1199 DPDMSVLRKV EFEQADFMWQ YQLRYERDVV AQQESILALE KFPTPASRLA ENSTTRP00000000392/1-1196 DPDMSVLRKV EFEQADFMWQ YQLRYERDVV AQQESILALE KFPTPASRLA 1051 1100 ENSBTAP00000053499/1-1202 LTDVLEQEQC FYRVRMAACF CLAKIANSMV STWTGPPAMK SLFTRMFCCK bmy_05126T0/1-1201 LTDILEQEQC FYRVRMSACF CLAKIANSMV STWTGPPAMK SLFTRMFCCK BACU013207/1-1559 LTDILEQEQC FYRVRMSACF CLA------- ---------- ---------- ENSP00000367406/1-1199 LTDILEQEQC FYRVRMSACF CLAKIANSMV STWTGPPAMK SLFTRMFCCK ENSTTRP00000000392/1-1196 LTDILEQEQC FYRVRMSACF CLAKIANSMV STWTGPPAMK SLFTRMFCCK 1101 1150 ENSBTAP00000053499/1-1202 TCPNIVKTNN FMSFQSYFLQ KTMPVAMALL RDVHNLCPKE VLTFILDLIK bmy_05126T0/1-1201 TCPNIVKTNN FMSFQSYFLQ KTMPVAMALL RDVHNLCPKE VLTFILDLIK BACU013207/1-1559 ---------- ---------- KTMPVAMALL RDVHNLCPKE VLTFILDLIK ENSP00000367406/1-1199 SCPNIVKTNN FMSFQSYFLQ KTMPVAMALL RDVHNLCPKE VLTFILDLIK ENSTTRP00000000392/1-1196 TCPNIVKTNN FMSFQSYFLQ KTMPVAMALL RDVHNLCPKE VLTFILDLIK 1151 1200 ENSBTAP00000053499/1-1202 YNDNRKNKFS DNYYRAEMID ALANSVTPAV SVNNEVRTLD NLNPDVRLIL bmy_05126T0/1-1201 YNDNRKNKFS DNYYRAEMID ALANSVTPAV SVNNEVRTLD NLNPDVRLIL BACU013207/1-1559 YNDNRKNKFS DNYYRAEMID ALANSVTPAV SVNNEVRTLD NLNPDVRLIL ENSP00000367406/1-1199 YNDNRKNKFS DNYYRAEMID ALANSVTPAV SVNNEVRTLD NLNPDVRLIL ENSTTRP00000000392/1-1196 YNDNRKNKFS DNYYRAEMID ALANSVTPAV SVNNEVRTLD NLNPDVRLIL 1201 1250 ENSBTAP00000053499/1-1202 EEITRFLNME KLLPSYRHTI TVSCLRAIRV LQKNGHVPSD PSLFKSYAEY bmy_05126T0/1-1201 EEITS----- ---------- ---CLRAIRV LQKNGHVPSD PALFKSYAEY BACU013207/1-1559 EEITRFLNME KLLPSYRHTI TVSCLRAIRV LQKNGHVPSD PALFKSYAEY ENSP00000367406/1-1199 EEITRFLNME KLLPSYRHTI TVSCLRAIRV LQKNGHVPSD PALFKSYAEY ENSTTRP00000000392/1-1196 EEITRFLNME KLLPSYRHTI TVSCLRAIRV LQKNGHVPSD PALFKSYAEY 1251 1300 ENSBTAP00000053499/1-1202 GHFVDIRIAA LEAVVDYTKV DRSYEELQWL LTMVQNDPVP YVRHKILNML bmy_05126T0/1-1201 GHFVDIRIAA LEAVVDYTKV DRSYEELQWL LNMIQNDPVP YVRHKILNML BACU013207/1-1559 GHFVDIRIAA LEAVVDYTKV DRSYEELQWL LNMIQNDPVP YVRHKILNML ENSP00000367406/1-1199 GHFVDIRIAA LEAVVDYTKV DRSYEELQWL LNMIQNDPVP YVRHKILNML ENSTTRP00000000392/1-1196 GHFVDIRIAA LEAVVDYTKV DRSYEELQWL LNMIQNDPVP YVRHKILNML 1301 1350 ENSBTAP00000053499/1-1202 TKNPPFTKSM ESPLCNEALV DQLWKLMNSG TSHDWRLRCG AVDLYFTLFG bmy_05126T0/1-1201 TKNPPFTKNM ESPLCNEALV DQLWKLMNSG TSHDWRLRCG AVDLYFTLFG BACU013207/1-1559 TKNPPFTKNM ESPLCNEALV DQLWKLMNSG TSHDWRLRCG AVDLYFTLFG ENSP00000367406/1-1199 TKNPPFTKNM ESPLCNEALV DQLWKLMNSG TSHDWRLRCG AVDLYFTLFG ENSTTRP00000000392/1-1196 TKNPPFTKNM ESPLCNEALV DQLWKLMNSG TSHDWRLRCG AVDLYFTLFG 1351 1400 ENSBTAP00000053499/1-1202 LSRPSCLPLP ELGLVLNLKE KKAVLNPTII PEAIAGNQEA AVNPSSHTQL bmy_05126T0/1-1201 LSRPSCLPLP ELGLVLNLKE KKAVLNPTII PEAIAGNQEA AVNPSSHTQL BACU013207/1-1559 LSRPSCLPLP ELGLVLNLKE KKAVLNPTII PEAIAGNQEA AVNPSSHTQL ENSP00000367406/1-1199 LSRPSCLPLP ELGLVLNLKE KKAVLNPTII PESVAGNQEA ANNPSSHPQL ENSTTRP00000000392/1-1196 LSRPSCLPLP ELGLVLNLKE KKAVLNPTII PEAIAGNQEA AVNPSSHTQL 1401 1450 ENSBTAP00000053499/1-1202 VGFQNPA--- ---------- ---------- ---------- ---------- bmy_05126T0/1-1201 VGFQNPEDDH LAKEASCNIS AHQQGVKRKA DTPLGSPLEP GQILEKNEDS BACU013207/1-1559 VGFQNPEDDH LAKEASCNIS AHQQGVKRKA DTPLGSPLEP GQILEKNEDS ENSP00000367406/1-1199 VGFQNP---- ---------- ---------- ---------- ---------- ENSTTRP00000000392/1-1196 VGFQNP---- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000053499/1-1202 --------IS SSQDEEEIDM DTVHDSQAFI SHHLNMLERP STPGLSKYRP bmy_05126T0/1-1201 SKVKLKIRFS SSQDEEEIDM DTVHDSQAFI SHHLNMLERP STPGLSKYRP BACU013207/1-1559 SKVKLKIRFS SSQDEEEIDM DTVHDSQAFI SHHLNMLERP STPGLSKYRP ENSP00000367406/1-1199 --------FS SSQDEEEIDM DTVHDSQAFI SHHLNMLERP STPGLSKYRP ENSTTRP00000000392/1-1196 --------FS SSQDEEEIDM DTVHDSQAFI SHHLNMLERP STPGLSKYRP 1501 1550 ENSBTAP00000053499/1-1202 ANSRSALIPQ HSAGCDGTPT TKPQWNMELP RKGTGKEQPP LEMSVHAAAA bmy_05126T0/1-1201 ASSRSALIPQ HSSGSDVTPT TKPQWNMELA RKGTGE---- -----IIIII BACU013207/1-1559 ASSRSALIPQ HASGSDGTPT TKPQWNMELA RKATGKEQSP LEMSMHPVAA ENSP00000367406/1-1199 ASSRSALIPQ HSAGCDSTPT TKPQWSLELA RKGTGKEQAP LEMSMHPAAS ENSTTRP00000000392/1-1196 ASSRSALIPQ HSSGSDGTPI TKPQWNMELA RKGTGKEQSP LEMSMHPVAA 1551 1600 ENSBTAP00000053499/1-1202 APLSVFGKEP ASSKHSEHHH HHHHEHKKKK KKHKHKHKHK HRRDGRERGR bmy_05126T0/1-1201 AVVNLLKNES I------NFI KFLYQLKEYI KNYRSQDLL- ---------- BACU013207/1-1559 APLSVFTKES TSSKHSDHHH HHHHEHKKKK KKHKHKHKHK HKHDSKEKDK ENSP00000367406/1-1199 APLSVFTKES TASKHSDHHH HHHHEHKKKK KKHKHKHKHK HKHDSKEKDK ENSTTRP00000000392/1-1196 APLSVFTKES TSSKHSDHHH HHHHEHKKKK KKHKHKHKHK HKHDSKEKDK 1601 1650 ENSBTAP00000053499/1-1202 GPLAFPSPAG GRSARSPSLS D bmy_05126T0/1-1201 ----FL---- ---------- - BACU013207/1-1559 EPFTFSSPAS GRSIRSPSLS D ENSP00000367406/1-1199 EPFTFSSPAS GRSIRSPSLS D ENSTTRP00000000392/1-1196 EPFTFSSPAS GRSIRSPSLS D