KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:15 2014 Check: 00 .. Name: bmy_18450T0/1-349 Len: 650 Check: 377 Weight: 1.00 Name: BACU002331/1-328 Len: 650 Check: 3775 Weight: 1.00 Name: ENSP00000328326/1-650 Len: 650 Check: 1735 Weight: 1.00 Name: ENSTTRP00000016340/1-381 Len: 650 Check: 966 Weight: 1.00 Name: ENSBTAP00000053508/1-645 Len: 650 Check: 6694 Weight: 1.00 // 1 50 bmy_18450T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU002331/1-328 ---------- ---------- ---------- ---------- ---------- ENSP00000328326/1-650 MAAKSDGRLK MKKSSDVAFT PLQNSDHSGS VQGLAPGLPS GSGAEDEEAA ENSTTRP00000016340/1-381 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053508/1-645 MAAKSDGRLK MKKGSDVAFT PLHNSDHSGS VQGLAPGLPS GSGAEDEEAA 51 100 bmy_18450T0/1-349 ---MVPIRSE LLRAC----- ---------- ---------- ---------- BACU002331/1-328 ---------- ---------- ---------- ---------- ---------- ENSP00000328326/1-650 GGGCCPDGGG CSRCCCCCAG SGGSAGSGGS GGVAGPGGGG AGSAALCLRL ENSTTRP00000016340/1-381 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053508/1-645 GGACCPDGSR CCCCCCCAGS GGSGGGSGGS GGPG--GGSG PGSAALCLRL 101 150 bmy_18450T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU002331/1-328 ---------- ---------- ---------- ---------- ---------- ENSP00000328326/1-650 GREQRRYSLW DCLWILAAVA VYFADVGTDV WLAVDYYLRG QRWWFGLTLF ENSTTRP00000016340/1-381 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053508/1-645 GPEQRRYSLW DCLWILAAVA VYFADVGTDI WLAVDYYLRG QRWWFGLTLF 151 200 bmy_18450T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU002331/1-328 ---------- ---------- ---------- ---------- ---------- ENSP00000328326/1-650 FVVLGSLSVQ VFSFRWFVHD FSTEDSATAA AASSCPQPGA DCKTVVGGGS ENSTTRP00000016340/1-381 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053508/1-645 FVVLGSLSVQ VFSFRWFVHD FSTEDS--AA AAAGCAQPGA EGKTAVGGGA 201 250 bmy_18450T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU002331/1-328 ---------- ---------- ---------- ---------- ---------- ENSP00000328326/1-650 AAGEGEARPS TPQRQASNAS KSNIAAANSG SNSSGATRAS GKHRSASCSF ENSTTRP00000016340/1-381 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053508/1-645 AAAEGEARPS TPQRQASSAG KGHVAATNSG SNSSGAARAG GKPRSASCSF 251 300 bmy_18450T0/1-349 ---------- ---------V SHTRVLTLK- --------WH Y--------- BACU002331/1-328 ---------- ---------- -----MGMK- --------FA F--------- ENSP00000328326/1-650 CIWLLQSLIH ILQLGQIWRY FHTIYLGIRS RQSGENDRWR FYWKMVYEYA ENSTTRP00000016340/1-381 ---------- ---------Y FHTIYLGIRS RRGAESGRWR FYWKMVYEYA ENSBTAP00000053508/1-645 CIWLLQSLTH ILQLGQFWRY FHTIYLGIRS RQSGENDRWR FYWKMVYEYA 301 350 bmy_18450T0/1-349 --------AL FL-------- ---------- YTKLISFTAA ASLVSLAWAL BACU002331/1-328 --------GS GF-------- ---------- ---LNCFTAA ASLVSLAWAL ENSP00000328326/1-650 DVSMLHLLAT FLESAPQLVL QLCIIVQTHS LQALQGFTAA ASLVSLAWAL ENSTTRP00000016340/1-381 DVSMLHLLAT FLESAPQLVL QLCIIVQTHS LQALQGFTAA ASLVSLAWAL ENSBTAP00000053508/1-645 DVSMLHLLAT FLESAPQLVL QLCIIVQTHS LQALQGFTAA ASLVSLAWAL 351 400 bmy_18450T0/1-349 ASYQKALRDS RDDKKPISYM AVVIQFCWHF FTIAARVITF ALFASVFQLY BACU002331/1-328 ASYQKALRDS RDDKKPISYM AVVIQFCWHF FTIAARVITF ALFASVFQLY ENSP00000328326/1-650 ASYQKALRDS RDDKKPISYM AVIIQFCWHF FTIAARVITF ALFASVFQLY ENSTTRP00000016340/1-381 ASYQKALRDS RDDKKPISYM AVVLQFCWQF FTIAARVITF ALFASVFQLY ENSBTAP00000053508/1-645 ASYQKALRDS RDDKKPISYM AVVIQFCWHF FTIAARVITF ALFASVFQLY 401 450 bmy_18450T0/1-349 FGIFIVLHWC IMTFWIVHCE TEFCITKWEE IVFDMVVGII YIFSWFNVKE BACU002331/1-328 FGIFIVLHWC IMTFWIVHCE TEFCITKWEE IVFDMVVGII YIFSWFNVKE ENSP00000328326/1-650 FGIFIVLHWC IMTFWIVHCE TEFCITKWEE IVFDMVVGII YIFSWFNVKE ENSTTRP00000016340/1-381 FGIFIVLHWC VMTFWIVHCE TEFCITKWEE IVFDMVVGII YIFSWFNVKE ENSBTAP00000053508/1-645 FGIFIVLHWC IMTFWIVHCE TEFCITKWEE IVFDMVVGII YIFSWFNVKE 451 500 bmy_18450T0/1-349 GRTRCRLFIY YFVILLENTA LSALWYLYKA PQIADAFAIP ALCVVFSSFL BACU002331/1-328 GRTRCRLFIY YFVILLENTA LSALWYLYKA PQITDAFAIP ALCVVFSSFL ENSP00000328326/1-650 GRTRCRLFIY YFVILLENTA LSALWYLYKA PQIADAFAIP ALCVVFSSFL ENSTTRP00000016340/1-381 GRTRCRLFIY YFVILVENTA LSALWYLYKA PQIADAFAIP ALCVVFSSFL ENSBTAP00000053508/1-645 GRTRCRLFIY YFVIL-ENTA LSALWYLYKA PQIADAFAIP ALCVVFSSFL 501 550 bmy_18450T0/1-349 TGVVFMLMYY AFFHPNGPRL GRSPSCACGD PAAAFTPSPE AATSALRSLS BACU002331/1-328 TGVVFMLMYY AFFHPNGPRL GRSPSCACGD PAAAFTPSPE AATSALRSLS ENSP00000328326/1-650 TGVVFMLMYY AFFHPNGPRF GQSPSCACED PAAAFTLPPD VATSTLRSIS ENSTTRP00000016340/1-381 TGVVFMLMYY AFFHPNGPRL GRSPSCACGD PAAAFTPSPE VATSALRSLS ENSBTAP00000053508/1-645 TGVVFMLMYY AFFHPNGPRF GQSPSCACED PSAAFALPPD VATSTLRSIS 551 600 bmy_18450T0/1-349 NTRSVAGDRD QKFAERDGCV PVFQVRPTAP STPSSRPPRI EESVIKIDLF BACU002331/1-328 NTRSVAGDRD QKFAERDGCV PVFQVRPTAP STPSSRPPRI EESVIKIDLF ENSP00000328326/1-650 NNRSVVSDRD QKFAERDGCV PVFQVRPTAP STPSSRPPRI EESVIKIDLF ENSTTRP00000016340/1-381 NTRSVAGDRD QKFAERDGCV PVFQVRPTAP STPSSRPPRI EESVIKIDLF ENSBTAP00000053508/1-645 NNRSVAGDRD QKFAERDGCV PVFQVRPTAP STPSSRPPRI EESVIKIDLF 601 650 bmy_18450T0/1-349 RNRYPAWERH VLDRSLRKAI LAFEGSPSPP RLQYKDDALI QERLEYETTL BACU002331/1-328 RNRYPAWERH VLDRSLRKAI LAFEGSPSPP RLQYKDDAFV QERLEYETTL ENSP00000328326/1-650 RNRYPAWERH VLDRSLRKAI LAFECSPSPP RLQYKDDALI QERLEYETTL ENSTTRP00000016340/1-381 RNRYPAWERH VLDRSLRKAI LAFEGSPSPP RLQYKDDALI QERLEYETTL ENSBTAP00000053508/1-645 RNRYPAWERH VLDRSLRKAI LAFECSPSPP RLQYKDDALI QERLEYETTL