KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:16 2014 Check: 00 .. Name: ENSP00000296702/1-1098 Len: 1159 Check: 6843 Weight: 1.00 Name: ENSBTAP00000053509/1-1062 Len: 1159 Check: 142 Weight: 1.00 Name: bmy_20113T0/1-1051 Len: 1159 Check: 589 Weight: 1.00 Name: BACU015996/1-1122 Len: 1159 Check: 3798 Weight: 1.00 Name: ENSTTRP00000000885/1-1092 Len: 1159 Check: 1762 Weight: 1.00 // 1 50 ENSP00000296702/1-1098 MAERGGDGGE SERFNPGELR MAQQQALRFR GPAPPPNAVM RGPPPLMRPP ENSBTAP00000053509/1-1062 MAERGGDGGD GERFNPGELR MAQQQALRFR GPAPPPNAVM RGPPPLMRPP bmy_20113T0/1-1051 MAERGGDGGD GERFNPGELR MAQQQALRFR GPAPPPNAVM RGPPPLMRPP BACU015996/1-1122 MAERGGDGGD GERFNPGELR MAQQQALRFR GPAPPPNAVM RGPPPLMRPP ENSTTRP00000000885/1-1092 MAERGGDGGD GERFNPGELR MAQQQALRFR GPAPPPNAVM RGPPPLMRPP 51 100 ENSP00000296702/1-1098 PPFGMMRGPP PPPRPPFGRP PFDPNMPPMP PPGGIPPPMG PPHLQRPPFM ENSBTAP00000053509/1-1062 PPFGMMRGPP PPPRPPFGRP PFDPNMPPMP PPGGIPPPMG PPHLQRPPFM bmy_20113T0/1-1051 PPFGMMRGPP PPPRPPFGRP PFDPNMPPMP PPGGIPPPMG PPHLQRPPFM BACU015996/1-1122 PPFGMMRGPP PPPRPPFGRP PFDPNMPPMP PPGGIPPPMG PPHLQRPPFM ENSTTRP00000000885/1-1092 PPFGMMRGPP PPPRPPFGRP PFDPNMPPMP PPGGIPPPMG PPHLQRPPFM 101 150 ENSP00000296702/1-1098 PPPMSSMPPP PGMMFPPG-- -----MPPVT APGTPALPPT EEIWVENKTP ENSBTAP00000053509/1-1062 PPPMGTMPPP PGMMFPPG-- -----MPPVT APGTPALPPT EEIWVENKTP bmy_20113T0/1-1051 PPPMGTMPPP PGMMFPPG-- -----MPPVT APGTPALPPT EEIWVENKTP BACU015996/1-1122 PPPMGTMPPP PGMMFPPGMX XXXXXMPPVT APGTPALPPT EEIWVENKTP ENSTTRP00000000885/1-1092 PPPMGTMPPP PGMMFPPG-- -----MPPVT APGTPALPPT EEIWVENKTP 151 200 ENSP00000296702/1-1098 DGKVYYYNAR TRESAWTKPD GVKVIQQSEL TPMLAAQAQV QAQAQAQAQA ENSBTAP00000053509/1-1062 DGKVYYYNAR TRESAWTKPD GVKVIQQSEL TPMLAAQAQV ---------- bmy_20113T0/1-1051 DGKVYYYNAR TRESAWTKPD GVKVIQQSEL TPMLAAQAQV ------QAQA BACU015996/1-1122 DGKVYYYNAR TRESAWTKPD GVKVIQQSEL TPMLAAQAQV QAQAQAQAQA ENSTTRP00000000885/1-1092 DGKVYYYNAR TRESAWTKPD GVKVIQQSEL TPMLAAQAQV ----QAQAQA 201 250 ENSP00000296702/1-1098 QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQAQV ENSBTAP00000053509/1-1062 ---------- ---------- ----QAQAQA QAQAQAQAQA QAQAQAQA-- bmy_20113T0/1-1051 QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQA-- BACU015996/1-1122 QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQA-- ENSTTRP00000000885/1-1092 QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQAQA QAQAQAQA-- 251 300 ENSP00000296702/1-1098 QAQVQAQVQA QAVGASTPTT SSPAPAVSTS TSSSTPSSTT STTTTATSVA ENSBTAP00000053509/1-1062 QVQAQVQVQA QAVGASTPTT SSPAPAVSTS ASSSTPSSTT STTTTASSVS bmy_20113T0/1-1051 QAQVQAQVQA QAVGASTPTT SSPAPAVSTS TSSSTPSSTT STTTTASSVS BACU015996/1-1122 QAQVQAQVQA QAVGASTPTT SSPAPAVSTS TSSSTPSSTT STTTTASSVS ENSTTRP00000000885/1-1092 QAQVQAQVQA QAVGASTPTT SSPAPAVSTS TSSSTPSSTT STTTTASSVS 301 350 ENSP00000296702/1-1098 QTVS------ ---------- ---------- ---------- ----TPTTQD ENSBTAP00000053509/1-1062 QTVS------ ---------- ---------- ---------- ----TPTTQD bmy_20113T0/1-1051 QTVS------ ---------- ---------- ---------- ---------- BACU015996/1-1122 QTVSKFPVFL IEEARIMHVK QLENSVQSYA AKIEDIRIQE NGETTPTTQD ENSTTRP00000000885/1-1092 QTVS------ ---------- ---------- ---------- ----TPTTQD 351 400 ENSP00000296702/1-1098 QTPSSAVSVA TPTVSVSTPA PTATPVQTVP QPHPQTLPPA VPHSVPQPTT ENSBTAP00000053509/1-1062 QTPSSAVSVA TPTVSVSTPA PTATPVQTVP QPHPQTLPPA VPHSVPQPAA bmy_20113T0/1-1051 --------IA TPTVSVSTPA PTATPVQTVP QPHPQALPPA VPHSVPQPAA BACU015996/1-1122 QTPSSAVSVA TPTVSVSTPA PTATPVQTVP QPHPQALPPA VPHSVPQPAA ENSTTRP00000000885/1-1092 QTPSSAVSVA TPTVSVSTPA PTATPVQTVP QPHPQALPPA VPHSVPQPAA 401 450 ENSP00000296702/1-1098 AIPAFPPVMV PPFRVPLPGM PIPLPGVAMM QIVSCPYVKT VATTKTGVLP ENSBTAP00000053509/1-1062 AIPAFPPVMV PPFRVPLPGM PIPLPGVAMM QIVSCPYVKT VATTKTGVLP bmy_20113T0/1-1051 AIPAFPPVMV PPFRVPLPGM PIPLPGVAMM QIVSCPYVKT VATTKTGVLP BACU015996/1-1122 AIPAFPPVMV PPFRVPLPGM PIPLP----- ---------- ------GVLP ENSTTRP00000000885/1-1092 AIPAFPPVMV PPFRVPLPGM PIPLPGVAMM QIVSCPYVKT VATTKTGVLP 451 500 ENSP00000296702/1-1098 GMAPPIVPMI HPQVAIAASP ATLAGATAVS EWTEYKTADG KTYYYNNRTL ENSBTAP00000053509/1-1062 GMAPPIVPMI HPQVAIAASP ATLAGATAVS EWTEYKTADG KTYYYNNRTL bmy_20113T0/1-1051 GMAPPIVPMI HPQVAIAASP ATLAGATAVS EWTEYKTADG KTYYYNNRTL BACU015996/1-1122 GMAPPIVPMI HPQVAIAASP ATLAGATAVS EWTEYKTADG KTYYYNNRTL ENSTTRP00000000885/1-1092 GMAPPIVPMI HPQVAIAASP ATLAGATAVS EWTEYKTADG KTYYYNNRTL 501 550 ENSP00000296702/1-1098 ESTWEKPQEL KEKEKLEEKI KEPIKEPSEE PLPMETEEED PKEEPIKEIK ENSBTAP00000053509/1-1062 ESTWEKPQEL KEKEKLEEKI KEPIKEPSEE PLPMETEEED PKEEPIKEIK bmy_20113T0/1-1051 ESTWEKPQEL KEKEKLEEKI KEPIKEPSEE PLPMETEEED PKEEPIKEIK BACU015996/1-1122 ESTWEKPQEL KEKEKLEEKI KEPIKEPSEE PLPMETEEED PKEEPIKEIK ENSTTRP00000000885/1-1092 ESTWEKPQEL KEKEKLEEKI KEPIKEPSEE PLPMETEEED PKEEPIKEIK 551 600 ENSP00000296702/1-1098 EEPKEEEMTE EEKAAQKAKP VATAPIPGTP WCVVWTGDER VFFYNPTTRL ENSBTAP00000053509/1-1062 EEPKEEEMTE EEKAAQKAKP VATTPIPGTP WCVVWTGDER VFFYNPTTRL bmy_20113T0/1-1051 EEPKEEEMTE EEKAAQKAKP VATTPIPGTP WCVVWTGDER VFFYNPTTRL BACU015996/1-1122 EEPKEEEMTE EEKAAQKAKP VATTPIPGTP WCVVWTGDER VFFYNPTTRL ENSTTRP00000000885/1-1092 EEPKEEEMTE EEKAAQKAKP VATTPIPGTP WCVVWTGDER VFFYNPTTRL 601 650 ENSP00000296702/1-1098 SMWDRPDDLI GRADVDKIIQ EPPHKKGMEE LKKLRHPTPT MLSIQKWQFS ENSBTAP00000053509/1-1062 SMWDRPDDLI GRADVDKIIQ EPPHKKGMEE VKKLRHPTPT MLSIQKWQFS bmy_20113T0/1-1051 SMWDRPDDLI GRADVDKIIQ EPPHKKGMEE VKKLRHPTPT MLSIQKWQFS BACU015996/1-1122 SMWDRPDDLI GRADVDKIIQ EPPHKKGMEE VKKLRHPTPT MLSIQKWQFS ENSTTRP00000000885/1-1092 SMWDRPDDLI GRADVDKIIQ EPPHKKGMEE VKKLRHPTPT MLSIQKWQFS 651 700 ENSP00000296702/1-1098 MSAIKEEQEL MEEINEDEPV KAKKRKRDDN KDIDSEKEAA MEAEIKAARE ENSBTAP00000053509/1-1062 MSAIKEEQEL MEEMNEDEPV KAKKRKRDDN KDIDSEKEAA MEAEIKAARE bmy_20113T0/1-1051 MSAIKEEQEL MEEMNEDEPV KAKKRKRDDN KDIDSEKEAA MEAEIKAARE BACU015996/1-1122 MSAIKEEQEL MEEMNEDEPV KAKKRKRDDN KDIDSEKEAA MEAEIKAARE ENSTTRP00000000885/1-1092 MSAIKEEQEL MEEMNEDEPV KAKKRKRDDN KDIDSEKEAA MEAEIKAARE 701 750 ENSP00000296702/1-1098 RAIVPLEARM KQFKDMLLER G--------- -----VSAFS TWEKELHKIV ENSBTAP00000053509/1-1062 RAIVPLEARM KQFKDMLLER G--------- -----VSAFS TWEKELHKIV bmy_20113T0/1-1051 RAIVPLEARM KQFKDMLLER GSQLNYEAIH FFILKVSAFS TWEKELHKI- BACU015996/1-1122 RAIVPLEARM KQFKDMLLER G--------- -----VSAFS TWEKELHKIV ENSTTRP00000000885/1-1092 RAIVPLEARM KQFKDMLLER G--------- -----VSAFS TWEKELHKIV 751 800 ENSP00000296702/1-1098 FDPRYLLLNP KERKQVFDQY VKTRAEEERR EKKNKIMQAK EDFKKMMEEA ENSBTAP00000053509/1-1062 FDPRYLLLNP KERKQVFDQY VKTRAEEERR EKKNKIMQAK EDFKKMMEEA bmy_20113T0/1-1051 ---------- -----VFDQY VKTRAEEERR EKKNKIMQAK EDFKKMMEEA BACU015996/1-1122 FDPRYLLLNP KERKQVFDQY VKTRAEEERR EKKNKIMQAK EDFKKMMEEA ENSTTRP00000000885/1-1092 FDPRYLLLNP KERKQVFDQY VKTRAEEERR EKKNKIMQAK EDFKKMMEEA 801 850 ENSP00000296702/1-1098 KFNPRATFSE FAAKHAKDSR FKAIEKMKDR EALFNEFVAA ARKKEKEDSK ENSBTAP00000053509/1-1062 KFNPRVTFSE FAAKHAKDSR FKAIEKMKDR EALFNEFVAA ARKKEKEDSK bmy_20113T0/1-1051 KFNPRATFSE FAAKHAKDSR FKAIEKMKDR EALFNEFVAA ARKKEKEDSK BACU015996/1-1122 KFNPRATFSE FAAKHAKDSR FKAIEKMKDR EALFNEFVAA ARKKEKEDSK ENSTTRP00000000885/1-1092 KFNPRATFSE FAAKHAKDSR FKAIEKMKDR EALFNEFVAA ARKKEKEDSK 851 900 ENSP00000296702/1-1098 TRGEKIKSDF FELLSNHHLD SQSRWSKVKD KVESDPRYKA VDSSSMREDL ENSBTAP00000053509/1-1062 TRGEKIKSDF FELLSNHHLD SQSRWSKVKD KVESDPRYKA VDSSSMREDL bmy_20113T0/1-1051 TRGEKIKSDF FELLSNHHLD SQSRWSKVKD KVESDPRYKA VDSSSMREDL BACU015996/1-1122 TRGEKIKSDF FELLSNHHLD SQSRWSKVKD KVESDPRYKA VDSSSMREDL ENSTTRP00000000885/1-1092 TRGEKIKSDF FELLSNHHLD SQSRWSKVKD KVESDPRYKA VDSSSMREDL 901 950 ENSP00000296702/1-1098 FKQYIEKIAK NLDSEKEKEL ERQARIEASL REREREVQKA RSEQTKEIDR ENSBTAP00000053509/1-1062 FKQYIEKIAK NLDSEKEKEL ERQARIEASL REREREVQKA RSEQTKEIDR bmy_20113T0/1-1051 FKQYIEKIAK NLDSEKEKEL ERQARIEASL REREREVQKA RSEQTKEIDR BACU015996/1-1122 FKQYIEKIAK NLDSEKEKEL ERQARIEASL REREREVQKA RSEQTKEIDR ENSTTRP00000000885/1-1092 FKQYIEKIAK NLDSEKEKEL ERQARIEASL REREREVQKA RSEQTKEIDR 951 1000 ENSP00000296702/1-1098 EREQHKREEA IQNFKALLSD MVRSSDVSWS DTRRTLRKDH RWESGSLLER ENSBTAP00000053509/1-1062 EREQHKREEA IQNFKALLSD MVRSSDVSWS DTRRTLRKDH RWESGSLLER bmy_20113T0/1-1051 EREQHKREEA IQNFKALLSD MVRSSDVSWS DTRRTLRKDH RWESGSLLER BACU015996/1-1122 EREQHKREEA IQNFKALLSD MVRSSDVSWS DTRRTLRKDH RWESGSLLER ENSTTRP00000000885/1-1092 EREQHKREEA IQNFKALLSD MVRSSDVSWS DTRRTLRKDH RWESGSLLER 1001 1050 ENSP00000296702/1-1098 EEKEKLFNEH IEALTKKKRE HFRQLLDETS AITLTSTWKE VKKIIKEDPR ENSBTAP00000053509/1-1062 EEKEKLFNEH IEALTKKKRE HFRQLLDETS AITLTSTWKE VKKIIKEDPR bmy_20113T0/1-1051 EEKEKLFNEH IEALTKKKRE HFRQLLDETS AITLTSTWKE VKKIIKEDPR BACU015996/1-1122 EEKEKLFNEH IEALTKKKRE HFRQLLDETS AITLTSTWKE VKKIIKEDPR ENSTTRP00000000885/1-1092 EEKEKLFNEH IEALTKKKRE HFRQLLDETS AITLTSTWKE VKKIIKEDPR 1051 1100 ENSP00000296702/1-1098 CIKFSSSDRK KQREFEEYIR DKYITAKADF RTLLKETKFI TYRSKKLIQE ENSBTAP00000053509/1-1062 CIKFSSSDRK KQREFEEYIR DKYITAKADF RTLLKETKFI TYRSKKLIQE bmy_20113T0/1-1051 CIKFSSSDRK KQREFEEYIR DKYITAKADF RTLLKETKFI TYRMTN---- BACU015996/1-1122 CIKFSSSDRK KQREFEEYIR DKYITAKADF RTLLKETKFI TYRSKKLIQE ENSTTRP00000000885/1-1092 CIKFSSSDRK KQREFEEYIR DKYITAKADF RTLLKETKFI TYRSKKLIQE 1101 1150 ENSP00000296702/1-1098 SDQHLKDVEK ILQNDKRYLV LDCVPEERRK LIVAYVDDLD RRGPPPPPTA ENSBTAP00000053509/1-1062 SDQHLKDVEK ILQNDKRYLV LDCVPEERRK LIVAYVDDLD RRGPPPPPTA bmy_20113T0/1-1051 ---------- ---------V LDCVPEERRK LIVAYVDDLD RRGPPPPPTA BACU015996/1-1122 SDQHLKDVEK ILQNDKRYLV LDCVPEERRK LIVAYVDDLD RRGPPPPPTA ENSTTRP00000000885/1-1092 SDQHLKDVEK ILQNDKRYLV LDCVPEERRK LIVAYVDDLD RRGPPPPPTA 1151 1200 ENSP00000296702/1-1098 SEPTRRSTK ENSBTAP00000053509/1-1062 SEPTRRSTK bmy_20113T0/1-1051 SEPTRRSTK BACU015996/1-1122 SEPTRRSTK ENSTTRP00000000885/1-1092 SEPTRRSTK