KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:17 2014 Check: 00 .. Name: BACU007323/1-261 Len: 455 Check: 7577 Weight: 1.00 Name: ENSP00000363298/1-402 Len: 455 Check: 8152 Weight: 1.00 Name: ENSBTAP00000053511/1-455 Len: 455 Check: 4006 Weight: 1.00 Name: bmy_05202T0/1-390 Len: 455 Check: 1954 Weight: 1.00 Name: ENSTTRP00000000843/1-302 Len: 455 Check: 9607 Weight: 1.00 // 1 50 BACU007323/1-261 ---------- ---------- ---------- ---------- ---------- ENSP00000363298/1-402 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053511/1-455 HPATGAGWEE AAPPGRAGRA GRSAGPRGRS QGSPAQPSPA TGGAVGARRS bmy_05202T0/1-390 RAGSVPGWG- ---------- ------RGVG GRPPGCESPA GG------RA ENSTTRP00000000843/1-302 ---------- ---------- ---------- ---------- ---------- 51 100 BACU007323/1-261 ---------- ---------- ---------- ---------- ------MWG- ENSP00000363298/1-402 -MSAEGAEPG PGSGSGPGPG PLCPEHGQAL SWFCGSERRP VCAACAGLGG ENSBTAP00000053511/1-455 AMSAEGAGQG PGPEPGSEPG PICPEHGQAL NWFCCSERRL VCAACTGLGG bmy_05202T0/1-390 AASVPGARRG PGAGSG---- ---------- -------RPR PAATCDRWSG ENSTTRP00000000843/1-302 ---------- ---------- ---------- ---------- ---------- 101 150 BACU007323/1-261 ---------- ---------- ---------- ---------- ---------- ENSP00000363298/1-402 RCRGHRIRRA EERAEELRNK IVDQCERLQL QSAAITKYVA DVLPGKNQRA ENSBTAP00000053511/1-455 RCRGHRIRRA EKRAEELRNK IVDQCERLQL QSATITKYVA DVLPGKNQRA bmy_05202T0/1-390 RCRGHRIRRA EERAEELRNK IVDQCERLQL QSATITKYVA DVLPGKNQRA ENSTTRP00000000843/1-302 ---------- ---------- ---------- ---------- ---------- 151 200 BACU007323/1-261 -----LAAIL CVTLMGRGFD FCPPP---VL IQIH------ ---------- ENSP00000363298/1-402 VSMASAAREL VIQRLSLVRS LCESEEQRLL EQVHGEEERA HQSILTQRVH ENSBTAP00000053511/1-455 VSMASAAREL VIQRLGLVRS LCESEEQRLL EQVHGEEERA HQSILTQRVH bmy_05202T0/1-390 VSTASAAREL VIQRLGLVRS LCESEEQRLL EQVHGEEERA HQSILTQRVH ENSTTRP00000000843/1-302 -STASAAREL VIQRLGLVRS LCESEEQRLL EQVHGEEERA HQSILTQRVH 201 250 BACU007323/1-261 -------FQN LPKSLFFFFS CI-------- --------RT EEAEGILDPK ENSP00000363298/1-402 WAEALQKLDT IRTGLVGMLT HLDDLQLIQK EQEIFE--RT EEAEGILDPQ ENSBTAP00000053511/1-455 WAEALQKLDT IRASLVDMLT HLDDLQLIQK EQEIFESTRT EEAEGILDPK bmy_05202T0/1-390 WAEALQKLDT IRTSLVDMLT HLDDLQLIQK EQEIFE--RT EEAEGILDPK ENSTTRP00000000843/1-302 WAEALQKLDT IRTSLVDMLT HLDDLQLIQK EQEIFE--RT EEAEGILDPK 251 300 BACU007323/1-261 ESEKLNFNEK CTRSPLLTQL WATAVLGSLS GTEDVRINER TVSPFLQLSD ENSP00000363298/1-402 ESEMLNFNEK CTRSPLLTQL WATAVLGSLS GTEDIRIDER TVSPFLQLSD ENSBTAP00000053511/1-455 ESEKLNFNEK CTRSPLLTQL WATAILGSLS GTEDVRMDER TVSPFLQLSD bmy_05202T0/1-390 ESEKLNFNEK CTRSPLLTQL WATAVLGS-- ---------- -------LSD ENSTTRP00000000843/1-302 ESEKLNFNEK CTRSPLLTQL WATAVLGSLS GTEDVRINER TVSPFLQLSD 301 350 BACU007323/1-261 DQRTLTFNAK KSKTCADGPE RFDHWPNALA TTSFQAGLHA WVVNVENSCA ENSP00000363298/1-402 DRKTLTFSTK KSKACADGPE RFDHWPNALA ATSFQNGLHA WMVNVQNSCA ENSBTAP00000053511/1-455 DRRTLTFNAK KSKACADGPE RFDHWPNALA DTSFQAGLHA WMVNVQNSCA bmy_05202T0/1-390 DQRTLSFNAK KSKTCADGPE RFDHWPNALA TTSFQAGLHA WMVNVENSCA ENSTTRP00000000843/1-302 DQRTLTFNAK KSKTCADGPE RFDHWPNALA TTSFQAGLHA WTVNVENSCA 351 400 BACU007323/1-261 YKVGVALGQL PRKGSGSDSR LGYNAFSWVF SRYDREFRFS HDGQHEPLAL ENSP00000363298/1-402 YKVGVASGHL PRKGSGSDCR LGHNAFSWVF SRYDQEFRFS HNGQHEPLGL ENSBTAP00000053511/1-455 YKVGVALGQL PRKGSGSDSR LGCNAFSWVF SRYGQDFRFS HDGQHEPLAL bmy_05202T0/1-390 YKVGVALGQL PRKGSGSDSR LGYNAFSWVF SRYDQEFRFS HDGQHEPLAL ENSTTRP00000000843/1-302 YKVGVALGQL PRKGSGSDSR LGYNAFSWVF SRYDQEFRFS HDGQHEPLAL 401 450 BACU007323/1-261 LRCPAQLGVL LDLQAQELLF YEPASGTVLH THHASFPGPL FPVFAVADQT ENSP00000363298/1-402 LRGPAQLGVV LDLQVQELLF YEPASGTVLC AHHVSFPGPL FPVFAVADQT ENSBTAP00000053511/1-455 LRCPAQLGVL LDLQAQELLF YEPASGTVLH IHHASFPGPL FPVFAVADQT bmy_05202T0/1-390 LRCPAQLGVL LDLQAQELLF YEPVSGTVLH THHASFPGPL FPVFAVADQT ENSTTRP00000000843/1-302 LRCPAQLGVL LDLQAQELLF YEAGSGTVLH THHASFPGPL FPVFAVADQT 451 500 BACU007323/1-261 ISIIR ENSP00000363298/1-402 ISIVR ENSBTAP00000053511/1-455 ISIVH bmy_05202T0/1-390 ISIVC ENSTTRP00000000843/1-302 ISIVR