KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:05:19 2014 Check: 00 .. Name: ENSTTRP00000004367/1-1764 Len: 1768 Check: 4723 Weight: 1.00 Name: ENSBTAP00000053515/1-1628 Len: 1768 Check: 7577 Weight: 1.00 Name: bmy_04887T0/1-1307 Len: 1768 Check: 5094 Weight: 1.00 Name: BACU011767/1-1510 Len: 1768 Check: 290 Weight: 1.00 // 1 50 ENSTTRP00000004367/1-1764 GSPMDPMVMK RPQLYGMGSN PHSQPQQSSP YPAGSYGPPG PQRYPIGIQG ENSBTAP00000053515/1-1628 ---------- ---------- ---------- ---------- ---------- bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004367/1-1764 RTPGAMGGMQ YPQQQVPPQY GQPGVSGYCQ QGQQPYYSQQ PQAQYLPSQP ENSBTAP00000053515/1-1628 ---------- ---------- ---------- ---------- ---------- bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004367/1-1764 QQRYQPQQDM SQEGYGTRSQ PPLAPGKPNH EDLNLIQQER PSSLPDLSGS ENSBTAP00000053515/1-1628 ---------M SQEGYGTRSQ PPLASGKPNH EDLNLIQQER PSSLPDLSGS bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000004367/1-1764 IDDLPTGTEA TLSSAVSASG STSSQGDQSN PAQSPFSPHA SPHLSSIPGG ENSBTAP00000053515/1-1628 IDDLPTGTEA TLSSAVSASG STSSQGDQSN PAQSPFSPHA SPHLSSIPGG bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000004367/1-1764 PSPSPVGSPV GSNQSRSGPI SPASIPGSQM PPQPPGSQSE SSSHPALSQS ENSBTAP00000053515/1-1628 PSPSPVGSPV GSNQSRSGPI SPASIP---- ---------- ---------- bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000004367/1-1764 PMPQERGFMA GTQRNPQMSQ YGPQQTGPSM SPHPSPGGQM HPEISSFQQS ENSBTAP00000053515/1-1628 ------GFMA GTQRNPQMSQ YGPQQTGPSM SPHPSPGGQM HPGISSFQQS bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 --------MA GTQRNPQMSQ YGPQQTGPSM SPHPSPGGQM HPGISSFQQS 301 350 ENSTTRP00000004367/1-1764 NSSGTYGPQM SQYGPQGNYS RPPTYSGVPS ASYSGPGPGM GINANSQMHG ENSBTAP00000053515/1-1628 NSSGTYGPQM SQYGPQGNYS RPPTYSGVPS ASYSGPGPSM GVNANSQMHG bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 NSSGTYGPQM SQYGPQGNYS RAPTYSGVPS ASYSGPGPGM GINANSQMHG 351 400 ENSTTRP00000004367/1-1764 QGPSQPCGAM PLGRMPSAGM QNRPFPGNMS SMTPSSPGMS QQGGPGMGPP ENSBTAP00000053515/1-1628 QGPSQPCGAM PLGRVPSAGM QNRPFPGNMS SMTPSSPGMS QQGGPGMGPP bmy_04887T0/1-1307 ---------- ---------- ---------- ---------- ---------- BACU011767/1-1510 QGPSQPCGAM PLGRMPSAGM QNRPFPGNMS SMTPSSPGMS QQGGPGMGPP 401 450 ENSTTRP00000004367/1-1764 MPTVNRKAQE AAAAVMQAAA NSAQSRQGGF PGVNQSGLMA SSSPYSQPMS ENSBTAP00000053515/1-1628 MPTVNRKAQE AAAAVMQAAA NSAQSRQGGF PGMNQSGLMA SSSPYSQPMN bmy_04887T0/1-1307 ---------- ---------- ---------- --MNQSGLMA SSSPYSQPMN BACU011767/1-1510 MPTVNRKAQE AAAAVMQAAA NSAQSRQGGF PGMNQSGLMA SSSPYSQPMN 451 500 ENSTTRP00000004367/1-1764 NSSGLMNTQA PPYSMTPNMV NSSTASMGLA DMMSPGESKL PLPLKADGKE ENSBTAP00000053515/1-1628 NSSGLMNTQA PPYSMTPNMV NSSTASMGLA DMMSPSESKL PLPLKADGKE bmy_04887T0/1-1307 NSSGLMNTQA PPYSLTPNMV NSSTASMGLA DMMSPGESKL PLPLKADGKE BACU011767/1-1510 NSSGLMNTQA PPYSLTPNMV NSSTASMGLA DMMSPGESKL PLPLKADGKE 501 550 ENSTTRP00000004367/1-1764 EGTAQPESKS KDSYSSQGIS QPPTPGNLPV PSPMSPSSAS ISSFHGDESD ENSBTAP00000053515/1-1628 EGSTQPEGKS KDSYSSQGIS QPPTPGNLPV PSPMSPSSAS ISSFHGDESD bmy_04887T0/1-1307 EGTAQPESKS KDSYSSQGIS QPPTPGNLPV PSPMSPSSAS ISSFHGDESD BACU011767/1-1510 EGTAQPESKS KDSYSSQGIS QPPTPGNLPV PSPMSPSSAS ISSFHGDESD 551 600 ENSTTRP00000004367/1-1764 SISSPGWPKT PSSPKSSSST TTGEKITKVY ELGNEPERKL WVDRYLTFME ENSBTAP00000053515/1-1628 SISSPGWPKT PSSPKSSSST TTGEKITKVY ELGNEPERKL WVDRYLTFME bmy_04887T0/1-1307 SISSPGWPKT PSSPKSSSST TTGEKITKVY ELGNEPERKL WVDRYLTFME BACU011767/1-1510 SISSPGWPKT PSSPKSSSST TTGEKITKVY ELGNEPERKL WVDRYLTFME 601 650 ENSTTRP00000004367/1-1764 ERGSPVSSLP AVGKKPLDLF RLYVCVKEIG GLAQVNKNKK WRELATNLNV ENSBTAP00000053515/1-1628 ERGSPVSSLP AVGKKPLDLF RLYVCVKEIG GLAQVNKNKK WRELATNLNV bmy_04887T0/1-1307 ERGSPVSSLP AVGKKPLDLF RLYVCVKEIG GLAQVNKNKK WRELATNLNV BACU011767/1-1510 ERGSPVSSLP AVGKKPLDLF RLYVCVKEIG GLAQVNKNKK WRELATNLNV 651 700 ENSTTRP00000004367/1-1764 GTSSSAASSL KKQYIQYLFA FECKTERGEE PPPEVFSTGD TKKQPKLQPP ENSBTAP00000053515/1-1628 GTSSSAASSL KKQYIQYLFA FECKIERGEE PPPEVFSTGD TKKQPKLQPP bmy_04887T0/1-1307 GTSSSAASSL KKQYIQYLFA FECKTERGEE PPPEVFSTGD TKKQPKLQPP BACU011767/1-1510 GTSSSAASSL KKQYIQYLFA FECKTERGEE PPPEVFSTGD TKKQPKLQPP 701 750 ENSTTRP00000004367/1-1764 SPANSGSLQG PQTPQSTGSN SMAEVPGDLK PPTPASTPHG QITPMQGGRS ENSBTAP00000053515/1-1628 SPANSGSLQG PQTPQSTGSN SMAEVPGDLK PPTPASTPHG QMTPMQGGRS bmy_04887T0/1-1307 SPVTFALFTF EYTSVTSGT- ---------- ---------- --------RS BACU011767/1-1510 SPANSGSLQG PQTPQSTGSN SMAEVPGDLK PPTPASTPHG QMTPMQGGRS 751 800 ENSTTRP00000004367/1-1764 STVSVHDPFS DASDSSFPKR NSMTPSAPYQ QGMSMPEVMG RMPYEPNKDP ENSBTAP00000053515/1-1628 STVSVHDPFS DASESSFPKR NSMTPSTPYQ QGMSMPDVMG RMPYEPNKDP bmy_04887T0/1-1307 STVSVHDPFS DASDSSFPKR NSMTPSAPYQ QGMSMPEVMG RMPYEPNKDP BACU011767/1-1510 STVSVHDPFS DASDSSFPKR NSMTPSAPYQ QGMSMPEVMG RMPYEPNKDP 801 850 ENSTTRP00000004367/1-1764 FGGMRKVP-S SEPFMTQGQM AASSMQDMYN QSPSGAMSSL GMGQRQPFPY ENSBTAP00000053515/1-1628 FGGMRKVPGS SEPFMTQGQM PTSSM-DMYN QSPSGAMSSL GMGPRQQFPY bmy_04887T0/1-1307 FGGMRKVPGS SEPFLTQGQM PTSSMQDMYN QSPSGAMSSL GMGQRQQFPY BACU011767/1-1510 FGGMRKVPGS SEPFLTQGQM PTSSMQDMYN QSPSGAMSSL GMGQRQQFPY 851 900 ENSTTRP00000004367/1-1764 GASYD-RXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN YKRHMDGVYG ENSBTAP00000053515/1-1628 GTVLHSRHEP YGQQYPGQGP PSGQPSYGGH QPGLYPQQTN YKRHMDGMYG bmy_04887T0/1-1307 GASYDRRHEP YGQQYPGQGP PSGQPPYGGH QPGLYPQQTN YKRHMDGMYG BACU011767/1-1510 GASYDRRHEP YGQQYPGQGP PSGQPPYGGH QPGLYPQQTN YKRHMDGMYG 901 950 ENSTTRP00000004367/1-1764 PPAKRHEGDM YNMQYGNQQQ EMYNQYGSSY SGPDRRPIQG QYPYPYTRER ENSBTAP00000053515/1-1628 PPAKRHEGDM YNMQYGSQQQ EMYNQYGSSY SGPDRRPLQG QYPYPYNRER bmy_04887T0/1-1307 PPAKRHEGDM YNMQYGNQQQ EMYNQYGSSY SGPDRRPIQG QYPYPYTRER BACU011767/1-1510 PPAKRHEGDM YNMQYGNQQQ EMYNQYGSSY SGPDRRPIQG QYPYPYTRER 951 1000 ENSTTRP00000004367/1-1764 MQGPGQIQAH GIPPQMMGGP MQSSSSEGPQ QSMWATRNDM PYPYQSRQGP ENSBTAP00000053515/1-1628 MQGPGQIQPH AIPPQMMGGP MQSSSNEGPQ QSMWATRNDM PYPYQNRQGP bmy_04887T0/1-1307 MQGPGQIQAH GIPPQMMGGP MQSSSSEGPQ QSMWATRNDM PYPYQSRQGP BACU011767/1-1510 MQGPGQIQAH GIPPQMMGGP MQSSSSEGPQ QSMWATRNDM PYPYQSRQGP 1001 1050 ENSTTRP00000004367/1-1764 GGPAQTPPYP GMNRTDDMMV PDQRINHESQ WPSHVSQRQP YMSSSASMQP ENSBTAP00000053515/1-1628 GGPTQAPPYP GINRTDDMMV PDQRINHESQ WPSHVSQRQP YMSSSASMQP bmy_04887T0/1-1307 GGPAQTPPYP GMNRTDDMMV PDQRINHESQ WPSHVSQRQP YMSSSASMQP BACU011767/1-1510 GGPAQTPPYP GMNRTDDMMV PDQRINHESQ WPSHVSQRQP YMSSSASMQP 1051 1100 ENSTTRP00000004367/1-1764 ITRPPQSSYQ TPPSLPNHIS RAPSPASFQR SLESRMSPSK SPFLPSMKMQ ENSBTAP00000053515/1-1628 ITRPPQSSYQ TPPSLPNHIS RAPSPASFQR SLESRMSPSK SPFLPSMKMQ bmy_04887T0/1-1307 ITRPPQTSYQ TPPSLPNHIS RAPSPASFQR SLESRMSPSK SPFLPSMKMQ BACU011767/1-1510 ITRPPQTSYQ TPPSLPNHIS RAPSPASFQR SLESRMSPSK SPFLPSMKMQ 1101 1150 ENSTTRP00000004367/1-1764 KVMPTVPTAQ VTGPAPQPPP VRREITFPPG SVEASQPVLK QRRKITSKDI ENSBTAP00000053515/1-1628 KVMPTVPTSQ VTGPPPQPPP IRREITFPPG SVEASQPVLK QRRKITSKDI bmy_04887T0/1-1307 KVMPTVPTAQ VTGPPPQPPP IRREITFPPG SVEASQPVLK QRRKITSKDI BACU011767/1-1510 KVMPTVPTAQ VTGPPPQPPP IRREITFPPG SVEASQPVLK QRRKITSKDI 1151 1200 ENSTTRP00000004367/1-1764 VTPEAWRVMM SLKSGLLAES TWALDTINIL LYDDSTVTTF NLSQLSGFLE ENSBTAP00000053515/1-1628 VTPEAWRVMM SLKSGLLAES TWALDTINIL LYDDSTVATF NLSQLSGFLE bmy_04887T0/1-1307 VTPEAWRVMM SLKSGLLAES TWALDTINIL LYDDSTVATF NLSQLSGFLE BACU011767/1-1510 VTPEAWRVMM SLKSGLLAES TWALDTINIL LYDDSTVATF NLSQLSGFLE 1201 1250 ENSTTRP00000004367/1-1764 LLVEYFRKCL IDIFGILM-Y E-GDPSQKAL DXXXXXXXXX XXXXXXXXXX ENSBTAP00000053515/1-1628 LLVEYFRKCL IDIFGILTEY EVGDPSQKAL DHNAAKRDDS QSLADDSGRE bmy_04887T0/1-1307 LLVEYFRKCL IDIFGILMEY EVGDPSQKAL DHNVVKRDDS QSLADDSGKE BACU011767/1-1510 LLVEYFRKCL IDIFGILMEY EVGDPSQKAL DHNVVKRDDS QSSADDSGKE 1251 1300 ENSTTRP00000004367/1-1764 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053515/1-1628 EEDAECIEEE EDEEDEEEED SGRAETEDRS SAAVASPDAT TDLKEKPRQA bmy_04887T0/1-1307 EEDAECIDEE EDEEEDEEED GGKAEIEDRS STALASPDAT ADPKEKPRQA BACU011767/1-1510 EEDAECIDEE EDEEEDEEED GGKAEIEDRS STALASPDAT ADPKEKPRQA 1301 1350 ENSTTRP00000004367/1-1764 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053515/1-1628 SKFDKLPIKI VKKNNLFVVD RSDKLGRVQE FSSGLLHWQL GGGDTTEHIQ bmy_04887T0/1-1307 SKFDKLPIKI VKKNNLFVVD RSDKLGRVQE FSSGLLHWQL GGGDTTEHIQ BACU011767/1-1510 SKFDKLPIKI VKKNNLFVVD RSDKLGRVQE FSSGLLHWQL GGGDTTEHIQ 1351 1400 ENSTTRP00000004367/1-1764 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053515/1-1628 THFESKMEIP PRRRPPPTLS STGRKKDQEG KGDSDEHQEK SIIATIDDVL bmy_04887T0/1-1307 THFESKMEIP PRRRPPPPLS STGRKKEQEG KGDSEEQQEK SIIATIDDVL BACU011767/1-1510 THFESKTEIP PRRRPPPPLS STGRKKEQEG KGDSEEQQEK SIIATIDDVL 1401 1450 ENSTTRP00000004367/1-1764 XXXXXXXPDD ANPGTQTESS KFPFGIHQAK SHRNIKLLED EPRSRDEAPL ENSBTAP00000053515/1-1628 SARPGALPED ANPGTQTESS KFPFGIHQAR SHRNIKLLED EPRSRDEAPL bmy_04887T0/1-1307 SARPGALPED TNPGAQTESS KFPFGIHQAK SHRNIKLLED EPRSRDEAPL BACU011767/1-1510 SARPGALPED TNPGAQTESS KFPFGIHQAK SHRNIKLLED EPRSRDEAPL 1451 1500 ENSTTRP00000004367/1-1764 CTVAHWQDSL AKRCICVSNI VRSLSFVPGN DAEMSKHPGL VLILGKLILL ENSBTAP00000053515/1-1628 CTIAHWQDSL AKRCICVSNI VRSLSFVPGN DAEMSKHPGL VLILGKLILL bmy_04887T0/1-1307 CTVAHWQDSL AKRCICVSNI VRSLSFVPGN DAEMSKHPGL VLILGKLILL BACU011767/1-1510 CTVAHWQDSL AKRCICVSNI VRSLSFVPGN DAEMSKHPGL VLILGKLILL 1501 1550 ENSTTRP00000004367/1-1764 HHEHPERKRA PQTYEKEEDE DKGVACSKDE WWWDCLEVLR DNTLVTLANI ENSBTAP00000053515/1-1628 HHEHPERKRA PQTYEKEEDE DKGVACSKDE WWWDCLEVLR DNTLVTLANI bmy_04887T0/1-1307 HHEHPERKRA PQTYEKEEDE DKGVACSKDE WWWDCLEVLR DNTLVTLANI BACU011767/1-1510 HHEHPERKRA PQTYEKEEDE DKGVACSKDE WWWDCLEVLR DNTLVTLANI 1551 1600 ENSTTRP00000004367/1-1764 SGQLDLSAYT ESICLPILDG LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL ENSBTAP00000053515/1-1628 SGQLDLSAYT ESICLPILDG LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL bmy_04887T0/1-1307 SGQLDLSAYT ESICLPILDG LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL BACU011767/1-1510 SGQLDLSAYT ESICLPILDG LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL 1601 1650 ENSTTRP00000004367/1-1764 VLETLCKLSI QDNNVDLILA TPPFSRQEKF YATLVRYVGD RKNPVCREMS ENSBTAP00000053515/1-1628 VLETLCKLSI QDNNVDLILA TPPFSRQEKF YATLVRYVGD RKNPVCREMS bmy_04887T0/1-1307 VLETLCKLSI QDNNVDLILA TPPFSRQEKF YATLVRYVGD RKNPVCREMS BACU011767/1-1510 VLETLCKLSI QDNNVDLILA TPPFSRQEKF YATLVRYVGD RKNPVCREMS 1651 1700 ENSTTRP00000004367/1-1764 MALLSNLAQG DALAARAIAV QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH ENSBTAP00000053515/1-1628 MALLSNLAQG DALAARAIAV QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH bmy_04887T0/1-1307 MALLSNLAQG DALAARAIAV QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH BACU011767/1-1510 MALLSNLAQG DALAARAIAV QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH 1701 1750 ENSTTRP00000004367/1-1764 MQPPPLEPPS VDMMCRAAKA LLAMARVDEN RSEFLLHEGR LLDISISAVL ENSBTAP00000053515/1-1628 MQPPPLEPPS VDMMCRAAKA LLAMARVDEN RSEFLLHEGR LLDISISAVL bmy_04887T0/1-1307 MQPPPLEPPS VDMMCRAAKA LLAMARVDEN RSEFLLHEGR LLDISISAVL BACU011767/1-1510 MQPPPLEPPS VDMMCRAAKA LLAMARVDEN RSEFLLHEGR LLDISISAVL 1751 1800 ENSTTRP00000004367/1-1764 NSLVASVICD VLFQIGQL ENSBTAP00000053515/1-1628 NSLVASVICD VLFQIGQL bmy_04887T0/1-1307 NSLVASVICD VLFQIGQL BACU011767/1-1510 NSLVASVICD VLFQIGQL