KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:05:19 2014 Check: 00 .. Name: ENSP00000379108/1-347 Len: 356 Check: 2596 Weight: 1.00 Name: ENSBTAP00000053516/1-347 Len: 356 Check: 371 Weight: 1.00 Name: ENSTTRP00000002216/1-285 Len: 356 Check: 2872 Weight: 1.00 Name: bmy_20164T0/1-227 Len: 356 Check: 7851 Weight: 1.00 Name: BACU008215/1-289 Len: 356 Check: 5972 Weight: 1.00 // 1 50 ENSP00000379108/1-347 MTVPVRGFSL LRGRLGRAPA LGRSTAPSVR APGEPGSAFR GFRSSGVRHE ENSBTAP00000053516/1-347 MTVVARGFWL LRGRLGRVSA LSRIAESPFA APGAAGQAFR GFRSSGMRYD ENSTTRP00000002216/1-285 ---------- ---------- ---------- ---------- ---------- bmy_20164T0/1-227 ---------- ---------- ---PSAGGTR SPAEPGRG-- ---------- BACU008215/1-289 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000379108/1-347 AIIISGTEMA KHIQKEIQRG VESWVSLGNR RPHLSIILVG DNPASHTY-- ENSBTAP00000053516/1-347 AIIISGTEMA KQIQKEIQHG VDSWVSLGNR RPHLSIILVG DNPASHTY-- ENSTTRP00000002216/1-285 ---------M ANIQKEIQRG V-SWISLGNG RPHLSIILVG DNPASHTY-- bmy_20164T0/1-227 --------RA RPAAAKTRAA -------GGG ASVLEPGFAA MTVSARAFWL BACU008215/1-289 --------MA KQIQKEIQRG VESWISLGNG RPHLSIILVG DNPASHTY-- 101 150 ENSP00000379108/1-347 VRNKIRAASA VGICSELILK PKDVSQEELL DV-TDQLNMD P-RVSGILVQ ENSBTAP00000053516/1-347 VRRKIKAAAA VGICSEIILK PKDVSQEELL DI-TDQLNAD P-RVSGILVQ ENSTTRP00000002216/1-285 VRKKIKAAAA VGICSEIILK PKDVSQEELL DI-TNQLNMD P-RVSGILVQ bmy_20164T0/1-227 LRGRLGRVSA LGRSAVSLLA APGTAGRAFR GFRSSGLRHD AIIISGTEMA BACU008215/1-289 VRKKVKAAAA VGICSEIILK PKDVSQEELL DI-TDQLNMD P-RVSGILVQ 151 200 ENSP00000379108/1-347 LPLP-----D HVDERTICNG IAPEKDVDGF HIINIGRLCL DQHSLIPATA ENSBTAP00000053516/1-347 LPLP-----D HMDERTVCNG IAPEKDVDGF HIINIGRLCL DQHSLIPATA ENSTTRP00000002216/1-285 LPLP-----D HVDERTVCNG IAPEKDVDGF HIINIGRLCL DQHSLIPATA bmy_20164T0/1-227 KQIQKEIQRD HVDERTVCNG IAPEKDVDGF HIINIGRLCL DQHSLIPATA BACU008215/1-289 LPLP-----D HVDERTVCNG IAPEKDVDGF HIINIGRLCL DQHSLIPATA 201 250 ENSP00000379108/1-347 SAVWEIIKRT GIQTFGKNVV VAGRSKNVGM PIAMLLHTDG EHERPGGDAT ENSBTAP00000053516/1-347 SAVWEIIRRT GIETFGKNVV VAGRSKNVGM PIAMLLHTDG EHERPGGDAT ENSTTRP00000002216/1-285 SAVWEIIKRT GIETLENIVV VAGRS-NAGM PIAMLLHTDG EH-RPGGDAT bmy_20164T0/1-227 SAVWEIIQRT GIETFGKNVV VAGRSKNAGM PIAMLLHTDG EHERPGGDAT BACU008215/1-289 SAVWEIIQRT GIETFGKNVV VAGRSKNAGM PIAMLLHTDG EHERPGGDAT 251 300 ENSP00000379108/1-347 VTIAHRYTPK EQLKIHTQLA DIIIVAAGIP KLITSDMVKE GAAVIDVGIN ENSBTAP00000053516/1-347 VTIAHRYTPK EQLKIHTLLA DVIIVAAGIP KLITSDMVKE GAAVIDVGIN ENSTTRP00000002216/1-285 VTIAHRYTPK EQLKIHTLLA DVIVVAAGIP KLITSDMVKE GAAVIDVGIN bmy_20164T0/1-227 VTIAHRYTPK EQLKIHTLLA DVIVVAA--- ---------- ---------- BACU008215/1-289 VTIAHRYTPK EQLKIHTLLA DVIVVAAGIP KLITSDMVKE GAAVIDVGIN 301 350 ENSP00000379108/1-347 YVHDPVTGKT KLVGDVDFEA VKKKAGFITP VPGGVGPMTV AMLLKNTLLA ENSBTAP00000053516/1-347 YVYDPITGKT KLVGDVDFEA VKKKASFITP VPGGVGPMTV AMLLKNTLLA ENSTTRP00000002216/1-285 YVHDPMTGKT KLVGDVDFEA VKKKASFITP VPGGVGPMTV AMLLKNTLLA bmy_20164T0/1-227 ---------- ---------- ---------- ---------- ---------- BACU008215/1-289 YVHDPMTGKT KLVGDVDFEA VKKKASFITP VPGGVGPMTV AMLLKNTLLA 351 400 ENSP00000379108/1-347 AKKIIY ENSBTAP00000053516/1-347 AKKIIY ENSTTRP00000002216/1-285 AKKIIY bmy_20164T0/1-227 ------ BACU008215/1-289 AKKIIY