KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:05:20 2014 Check: 00 .. Name: ENSP00000301365/1-791 Len: 942 Check: 9885 Weight: 1.00 Name: ENSBTAP00000053518/1-792 Len: 942 Check: 7094 Weight: 1.00 Name: bmy_00199T0/1-913 Len: 942 Check: 5247 Weight: 1.00 Name: ENSTTRP00000001127/1-788 Len: 942 Check: 1603 Weight: 1.00 // 1 50 ENSP00000301365/1-791 MKAHPKEMVP LMGKRVAAPS GNPAILPEKR PAEITPTKKS AHFFLEIEGF ENSBTAP00000053518/1-792 MKAHPKEMVP LTGRRATIPF VNPAIMQEKR PSEITPTKKS AHFFLEIEGF bmy_00199T0/1-913 MDAHLKEMVP LMGRIATNPS GNVTILQEKR PAETTPTKKS AHFFLEIEGF ENSTTRP00000001127/1-788 MDAHPKEMVP LMGRIATMPS GNAAILQEKR LAEITPT-KS AHFFLEIEGF 51 100 ENSP00000301365/1-791 EPNPTVAKTS PPVFSKPMDS NIRQC-ISGN CDDMDSPQSP QDDVTETPSN ENSBTAP00000053518/1-792 EPNPTVAKTS PPIFSKPMDS NIRQC-VSGN CDDMDSPQSP QDDVTETPSN bmy_00199T0/1-913 EPNPTVTKTS PLIFSKPMDS NIRQC-LPGS CDDMDSPQSP QDDVTETPFN ENSTTRP00000001127/1-788 EPSTTVTKTS PLIFSKPMDS NIRQCSLPGS CDDMDSPHSP QDDVTETPFN 101 150 ENSP00000301365/1-791 PNSPSAQLAK EEQRRKKRRL KKRIFAAVSE GCVEELVELL VELQELCRRR ENSBTAP00000053518/1-792 PNSPSANLAK EEQRRKKKRL KKRIFTAVSE GCVEELLELL GELQELCKRR bmy_00199T0/1-913 PNSPSANLAK QEQRHKKRWL RKHIFVAVSE GCVERLLELL MELQELSVQR ENSTTRP00000001127/1-788 PNSPSANPAK QEQRHKQKRL KKHIFAAVSE GCVQQLLELL MELQELCEQR 151 200 ENSP00000301365/1-791 HDEDVPDFLM HKLTASDTGK TCLMKALLNI NPNTKEIVRI LLAFAEENDI ENSBTAP00000053518/1-792 HSLDVPDFLM HKLTALDTGK TCLMKALLNI NPNTKEIVRI LLAFAEENDI bmy_00199T0/1-913 RRLDVPDFLM HKLTALDTGK TCLMKALLNI NPSTKEIVQI LLAFAEENDI ENSTTRP00000001127/1-788 HSLEVPDFLM RNLTALDTGK TCLMKALLNI NPSTKEIVRI LLAFAEENDI 201 250 ENSP00000301365/1-791 LGRFINAEYT EEAYEGQTAL NIAIERRQGD IAALLIAAGA DVNAHAKGAF ENSBTAP00000053518/1-792 LDRFINAEYT EEAYEGQTAL NIAIERRQGD ITAALIAAGA DVNAHAKGVF bmy_00199T0/1-913 LGRFINAKYT EEAYEGQTAL NIAIERRQGD ITALLIAAGA DVNAHAKGVF ENSTTRP00000001127/1-788 LDRFINAKYT EEAFEGQTAL NIAIERRQGD IAAVLIEAGA DVNAHAKGVF 251 300 ENSP00000301365/1-791 FNPKYQHEGF YFGETPLALA ACTNQPEIVQ LLMEHEQTDI TSRDSRGNNI ENSBTAP00000053518/1-792 FNPKYQHEGF YFGETPLALA ACTNQPEIVQ MLMENEQTDI TSQDSRGNNI bmy_00199T0/1-913 FNPKYQHEGF YFGETPLALA ACTNQPEIVQ LLMDNEQTDI TSQDSRGNNI ENSTTRP00000001127/1-788 FNPKYQHEGF YFGETPLALA ACTNQPEIVE LLMGNEQTDI TSQDSRGNNI 301 350 ENSP00000301365/1-791 LHALVTVAED FKTQNDFVKR MYDMILLRSG NWELETTRNN DGLTPLQLAA ENSBTAP00000053518/1-792 LHALVTVAED FKTQNDFVKR MYDMILLRSR TWELETTRNN DGLTPLQLAA bmy_00199T0/1-913 LHALVTVAED FKTQNDFVKH MYDMILLRSG NWELETTRNN DGLTPLQLAA ENSTTRP00000001127/1-788 LHALVTVAED FKTQNDFVKH MYDMILLRSG NWELETMRNN NGLTPLQLAA 351 400 ENSP00000301365/1-791 KMGKAEILKY ILSREIKEKR LRSLSRKFTD WAYGPVSSSL YDLTNVDTTT ENSBTAP00000053518/1-792 KMGKAEILKY ILSREIKDKR LRSLSRKFTD WAYGPVSSSL YDLTNVDTTT bmy_00199T0/1-913 KMGKAEILKY ILSREIKEKR LRTLSRKFTD WAYGPVSSSL YDLTNVDTMT ENSTTRP00000001127/1-788 KMGKAEILKY ILSREIKEKR LRSLSRKFTD WAYGPVSSSL YDLTNVDTMT 401 450 ENSP00000301365/1-791 DNSVLEITVY NTNIDNRHEM LTLEPLHTLL HMKWKKFAKH MFFLSFCFYF ENSBTAP00000053518/1-792 DNSVLEIIVY NTNIDNRHEM LTLEPLHTLL HMKWKKFAKY MFFLSFCFYF bmy_00199T0/1-913 DNSLLKIIVY NTNIDNRHEM LTLEPLHTLL RMKWKKFAKY MFFLSFCSYF ENSTTRP00000001127/1-788 DNSVLKIIVY NTNIDNRHEM LTLEPLHTLL HMKWKKFAKY MFFLSFCSYF 451 500 ENSP00000301365/1-791 FYNITLTLVS YYRPREEEAI PHPLALTHKM GWLQLLGRMF VLIWAMCISV ENSBTAP00000053518/1-792 FYNITLTLVS YYRPREEEAL PHPLALTHKM GWLQLLGRMF VLIWAMFISV bmy_00199T0/1-913 FYNITLTFVS YYHSREKEAL PHPLALTYKM GWLQLLGKMF VLIWAMCISV ENSTTRP00000001127/1-788 FYNITLTIIS YYHTRGEEAL KHPLA--NKM GWLQLLGRMF VLIWAMCISV 501 550 ENSP00000301365/1-791 KE-GIAIFLL RPSDLQSILS DAWFHFVFFI QAVLVILSVF LYLFAYKEYL ENSBTAP00000053518/1-792 KEQGIAIFLL RPSDLQSILS DAWFHFVFFA QAVLVILSVF LYLFAYKEYL bmy_00199T0/1-913 KE-GIAIFLL RPSDLQSILS DAWFHFVFFV QAVLVILSVF LYLLAYKEYL ENSTTRP00000001127/1-788 KE-GIAIFLL RPSDMQSILS DAWFHFVFFV QALLVILSVL LYLFACKEYL 551 600 ENSP00000301365/1-791 ACLVLAMALG WANMLYYTRG FQSMGMYSVM IQKVILHDVL KFLFVYIVFL ENSBTAP00000053518/1-792 ACLVLAMALG WANMLYYTRG FQSMGMYSVM IQKVILHDVL KFLFVYIVFL bmy_00199T0/1-913 ACLVLA---- ---------- ---------- ---VILHDVL KFLFVYIVFL ENSTTRP00000001127/1-788 TCLVLAMALG WANMLYYTRG FQSMGMYSVM IQKVILHDVL KFLFVYIVFL 601 650 ENSP00000301365/1-791 LGFGVALASL IEKCPKDNKD CSSYGSFSDA VLELFKLTIG LGDLNIQQNS ENSBTAP00000053518/1-792 LGFGVALASL IEKCPKSHEN CSSYGSFSDA VLELFKLTIG LGDLNIQQNS bmy_00199T0/1-913 FGFGVALASL IEKCSKDIED SSSFGSFSDT VLELFKLTIG LGDLNIQKNS ENSTTRP00000001127/1-788 FGFGVALASL IEKCSKDNED CTSYGSFSDT VLELFKLTIG LGDLKIQQNS 651 700 ENSP00000301365/1-791 KYPILFLFLL ITYVILTFVL LLNMLIALMG ETVENVSKES ERIWRLQRAR ENSBTAP00000053518/1-792 KYPILFLFLL ITYVILTFVL LLNMLIALMG ETVENVSKES ERIWRLQRAR bmy_00199T0/1-913 KYPILFLFLL ITYVTLTFVL LLNMLIALMG ETVENISKES ERIWRLQRAR ENSTTRP00000001127/1-788 KYPILSLILL ITYVTLTFVL LLNMLIALMG ETVENISKES ERIWRLQRAR 701 750 ENSP00000301365/1-791 TILEFEKMLP EWLRSRFRMG ELCKVAEDDF RLCL------ --RINEVKWT ENSBTAP00000053518/1-792 TILEFEKILP EWLRSRFRMG ELCKVAEDDF RLCL------ --RINEVKWT bmy_00199T0/1-913 TTLEFEKMLP GWLRSRFQMG ELCKVAEQDF RLCLRENDYH TCRINEVKWT ENSTTRP00000001127/1-788 TILEFEKMLP EWLKSRFQMG ELCKVAEQDF RLCL------ --RINEVKWT 751 800 ENSP00000301365/1-791 EWKTHVSFLN EDPGPVRRT- ---------A DFNKIQDSSR NNSKTTLNAF ENSBTAP00000053518/1-792 EWKTHVSFLN EDPGPGRRT- ---------A DSNKIQDSSR SNSKTTLNAF bmy_00199T0/1-913 EWKTHQISTK SKILPGATAK LPSMHLTKWM KFRKLQCRNR TQSSCAFGPS ENSTTRP00000001127/1-788 EWKTHVSFLN EDPGPGRRS- ---------X XXXXXXXXXX XXXXXXXXXX 801 850 ENSP00000301365/1-791 E--------- ---------- ---------- ---------- -----EVEE- ENSBTAP00000053518/1-792 E--------- ---------- ---------- ---------- -----EIDE- bmy_00199T0/1-913 EAGGWVLGLV LRALQSDGAW LHLQRRGKHP HAGRILGLGA GAVNFEVEEK ENSTTRP00000001127/1-788 X--------- ---------- ---------- ---------- -----XXDE- 851 900 ENSP00000301365/1-791 ---------- ---------- --FPETSV-- ---------- ---------- ENSBTAP00000053518/1-792 ---------- ---------- --FPETSV-- ---------- ---------- bmy_00199T0/1-913 AFEKGALAKM CGLFLDSHPL IFLPTEITQS HFGDRGRIHY FRNYVIYLFG ENSTTRP00000001127/1-788 ---------- ---------- --VPESV--- ---------- ---------- 901 950 ENSP00000301365/1-791 ---------- ---------- ---------- ---------- -- ENSBTAP00000053518/1-792 ---------- ---------- ---------- ---------- -- bmy_00199T0/1-913 IKMVLTFLLA GCRVCVKLYV QERSHKWSKN ILVPLKKCFY DF ENSTTRP00000001127/1-788 ---------- ---------- ---------- ---------- --