KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:06:05 2014 Check: 00 .. Name: ENSBTAP00000053526/1-1440 Len: 1450 Check: 82 Weight: 1.00 Name: ENSTTRP00000004261/1-1434 Len: 1450 Check: 2780 Weight: 1.00 Name: bmy_16854T0/1-1044 Len: 1450 Check: 3168 Weight: 1.00 Name: BACU007422/1-1160 Len: 1450 Check: 8201 Weight: 1.00 // 1 50 ENSBTAP00000053526/1-1440 MDFSFSFMQG IMGNTIQQPP QLIDSANIRQ EDAFDNNSDI VEDGGQTPYE ENSTTRP00000004261/1-1434 MDFSFSFMQG IMGNTIQQPP QLIDSANIRQ EDAFDNNSDI VEDGGQTPYE bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053526/1-1440 ATLQQGFQYP PTTEDLPPLT NGYPPSISMY ETQTKYQSYN QYPNGSANGF ENSTTRP00000004261/1-1434 ATLQQGFQYP PTTEDLPPLT NGYPSSISMY ETQTKYQSYN QYPNGSANGF bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000053526/1-1440 GAVRNFSPSD YYHSEIPNTR PHEILEKPSP PQPPPPPPSV PQTVIPKKTG ENSTTRP00000004261/1-1434 GAVRNFSPTD YYHSEIPNTR PHEILEKPSP PQPPP-PPSV PQTVIPKKTG bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---------- ---------- ----MHHSGP CQGAPIPAK- ---------- 151 200 ENSBTAP00000053526/1-1440 SPEIKLKITK TIQNGRELFE SSLCGDLLNE VQASEHTKSK HESRKEKRKK ENSTTRP00000004261/1-1434 SPEIKLKITK TIQNGRELFE SSLCGDLLNE VQASEHTKSK HESRKEKRKK bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000053526/1-1440 SNKHDSSRSE ERKSHKIPKL EPEEQNRPNE RVDPVSEKPR EDPVLKEETP ENSTTRP00000004261/1-1434 SNKHDSSRSE --RSHKIPRL --PEENRPNE RVDTVSEKPR EDPVLKEELP bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000053526/1-1440 VQPMLPSVPT AEASAGVKFQ VGDLVWSKVG TYPWWPCMVS SDPQLEVHTK ENSTTRP00000004261/1-1434 VQPMLPSVPT TEVSAGVKFQ VGDLVWSKVG TYPWWPCMVS SDPQLEVHTK bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000053526/1-1440 INTRGAREYH VQFFSNQPER AWVHEKRVRE YKGHKQYEEL LAEATRQASN ENSTTRP00000004261/1-1434 INTRGAREYH VQFFSNQPER AWVHEKRVRE YKGHKQYEEL LAEATRQASN bmy_16854T0/1-1044 ---------- ---------- ---------- ---------- ---------- BACU007422/1-1160 ---EGAREYH VQFFSNQPER AWVHEKRVRE YKGHKQYEEL LAEATRQASN 351 400 ENSBTAP00000053526/1-1440 HSEKQKIRKP RPQRERAQWD IGIAHAEKAL TMTREERIEQ YTFIYIDKQP ENSTTRP00000004261/1-1434 HSEKQKIRKP RPQRERAQWD IGIAHAEKAL KMTREERIEQ YTFIYIDKQP bmy_16854T0/1-1044 ---------- ---------- ---------- -MTREERIEQ YTFIYIDKQP BACU007422/1-1160 HSEKQKIRKP RPQRERAQWD IGIAHAEKAL KMTREERIEQ YTFIYVDKQP 401 450 ENSBTAP00000053526/1-1440 EETLSQAKKN VVSKAEVKKP RRPRSVLNVQ PEQTNAGEAA SSPSGTEMRR ENSTTRP00000004261/1-1434 EEALSQAKKN VASKAEVKKT RRPRSVLNTQ PEQTSAGEGA SSLSGTEIRR bmy_16854T0/1-1044 EEALSQAKKN VASKAEVKKT RRPRSVLNTQ PEQTSAGEAA SSLSGTEIRR BACU007422/1-1160 EEALSQAKKN VASKAEVKKT RRPRSVLNTQ PEQTSAGEAA SSPSGTEIRR 451 500 ENSBTAP00000053526/1-1440 HSQRRHTGVD EDEPPPVKVA WKTAAARKSL PASITMHKGS LDLQKCNMSP ENSTTRP00000004261/1-1434 HSQRRHTSVE EDEPPPVKVA WKTAAARKSL PASITMHKGS LDLQKCNMSP bmy_16854T0/1-1044 HSQRRHTSVE EDEPPPVKVA WKTAAARKSL PASITMHKGS LDLQKCNMSP BACU007422/1-1160 HSQRRHTSVE EDEPPPVKVA WKTAAARKSL PASITMHKGS LDLQKCNMSP 501 550 ENSBTAP00000053526/1-1440 VVKIEQVFAL QNATGDGKFI DQFVYSTKGI GNKTEISVRG QDRLIISTPN ENSTTRP00000004261/1-1434 VVKIEQVFAL QNATGDGKFI DQFVYSTKGI GNKTEISVRG QDRLIISTPN bmy_16854T0/1-1044 VVKIEQVFAL QNATGDGKFI DQFVYSTKGI GNKTEISVRG QDRLIISTPN BACU007422/1-1160 VVKIEQVFAL QNATGDGKFI DQFVYSTKGI GNKTEISVRG QDRLIISTPN 551 600 ENSBTAP00000053526/1-1440 QRNEKATQNM SSPEATSGSA GSVEKKQQRR SIRTRSESEK STEVVPKKKI ENSTTRP00000004261/1-1434 QRNEKATQNM SSPETASGPA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16854T0/1-1044 QRNEKATQNT SSPETTSGPA GSVEKKQQRR SIRTRSESEK STEVVPKKKI BACU007422/1-1160 QRNEKATQNT SSPETTSGPA GSVEKKQQRR SIRTRSESEK STEVVPKKKI 601 650 ENSBTAP00000053526/1-1440 KKEQVETVPQ ATVKTGLQKG ASEISDSCKP LKKRSRASTD VEMAGSTYRD ENSTTRP00000004261/1-1434 XXXXVETVPQ ATVKTGLQKG ASEISDSCKP LKKRSRASTD VEMASSTYRD bmy_16854T0/1-1044 KKEQVETVPQ ATVKTGLQKG ASEISDSCKP LKKRSRASTD VEMASSTYRD BACU007422/1-1160 KKEQVETVPQ ATVKTGLQKG ASEISDSCKP LKKRSRASTD VEMASSTYRD 651 700 ENSBTAP00000053526/1-1440 TSDSDSRGLS DLQAGFGKQV DSPSATAEAD VSDVQSVDSS LSRRGTGMSR ENSTTRP00000004261/1-1434 TSDSDSRGLS DLQVGFGKQV DSPSATADAD VSDVQSVDSS LSRRGTGMSR bmy_16854T0/1-1044 TSDSDSRGLS DLQVGFGKQV DSPSATADAD VSDVQSVDSS LSRRGTGMSR BACU007422/1-1160 TSDSDSRGLS DLQVGFGKQV DSPSATADAD VSDVQSVDSS LSRRGTGMSR 701 750 ENSBTAP00000053526/1-1440 KDTVCQICES SGDSLIPCEG ECCKHFHLE- CLGLSSPPDG KFVCVECKTG ENSTTRP00000004261/1-1434 KDTVCQICES SGDSLIPCEG ECCKHFHLE- CLGLTSFPDG KFICVECKTG bmy_16854T0/1-1044 KDTVCQCLYR ---------- KICQIIEMYL CLSKELY--- KVCRVNYFSG BACU007422/1-1160 KDTVCQICES SGDSLIPCEG ECCRHFHLE- CLGLTSFPDG KFICVECKTG 751 800 ENSBTAP00000053526/1-1440 QHPCFSCKVS GADVKRCSVS ACGKFYHEAC VRKFPTAVFE SKGFRCPQHC ENSTTRP00000004261/1-1434 EHPCFSCKVS GTDVKRCSVG ACGKFYHEAC VRKFPTAIFE SKGFRCPQHC bmy_16854T0/1-1044 EHPCFSCKVS GTDVKRCSVG ACGKFYHEAC VRKFPTAIFE SKGFRCPQHC BACU007422/1-1160 EHPCFSCKVS GTDVKRCSVG ACGKFYHEAC VRKFPTAIFE SKGFRCPQHC 801 850 ENSBTAP00000053526/1-1440 CSACSMEKDI HKASKGRMVR CLRCPVAYHS VDACIAAGST LVSSCVLICS ENSTTRP00000004261/1-1434 CSACCMEKDI HKASKGRMMR CLRCPVAYHS GDACIAAGSI FVSSYVLICS bmy_16854T0/1-1044 CSACCMEKDI HKASKGRMMR CLRCPVAYHS GDACIAAGSI FVSSYVLICS BACU007422/1-1160 CSACCMEKDI HKASKGRMMR CLRCPVAYHS GDACIAAGSI FVSSYVLICS 851 900 ENSBTAP00000053526/1-1440 NHSTRSSGSS SAVNVGFCFV CARGLIVQDH SDPMFSSYAY KSHYLLNESN ENSTTRP00000004261/1-1434 NHSKRSSNSS SAVNVGFCFV CARGLIVQDH SDPMFSSYAY KSHYLLNESN bmy_16854T0/1-1044 NHSKRSSNSS SAVNVGFCFV CARGLIVQDH SDPMFSSYAY KSHYLLNESN BACU007422/1-1160 NHSKRSSNSS SAVNVGFCFV CARGLIVQDH SDPMFSSYAY KSHYLLNESN 901 950 ENSBTAP00000053526/1-1440 RAELMKLPMI PSSSASKKKC EKGGRLLCCE SCPASFHPEC LSIETPEGCW ENSTTRP00000004261/1-1434 RAELMKLPMI PSSSASKKKC EKGGRLLCCE SCPASFHPEC LSIEMPEGCW bmy_16854T0/1-1044 RAELMKLPMI PSSSASKKKC EKGGRLLCCE SCPASFHPEC LSIEMPEGCW BACU007422/1-1160 RAELMKLPMI PSSSASKKKC EKGGRLLCCE SCPASFHPEC LSIEMPEGCW 951 1000 ENSBTAP00000053526/1-1440 NCNDCKAGKK LHYKQIVWAK LGNYR----- ----WWPAEI CNPRSVPLNI ENSTTRP00000004261/1-1434 NCNDCKAGKK LHYKQIVWVK LGNYR----- ----WWPAEI CNPRSVPLNI bmy_16854T0/1-1044 NCNDCKAGKK LHYKQIVWVK LGNYRQVFPR TKRKWWPAEI CNPRSVPLNI BACU007422/1-1160 NCNDCKAGKK LHYKQIVWVK LGNYRQVFPR TKRKWWPAEI CNPRSVPLNI 1001 1050 ENSBTAP00000053526/1-1440 QGLKHDLGDF PVFFFGSHDY YWVHQGRVFP YVEGDKSFAD GQTSINKTFK ENSTTRP00000004261/1-1434 QGLKHDLGDF PVFFFGSHDY YWVHQGRVFP YVEGDKSFAE GQTSINKTFK bmy_16854T0/1-1044 QGLKHDLGDF PVFFFGSHDY YWVHQGRVFP YVEGDKSFAE GQTSINKTFK BACU007422/1-1160 QGLKHDLGDF PVFFFGSHDY YWVHQGRVFP YVEGDKSFAE GQTSINKTFK 1051 1100 ENSBTAP00000053526/1-1440 KALEEADSHP QVLKYLRESD SGTEKRKNTI KPPAPKQIQA NKVIGKVQIQ ENSTTRP00000004261/1-1434 KALEEAAKRF QELKAQRESK EALEIEKNSR KPPPYKHIKA NKVIGKVQIQ bmy_16854T0/1-1044 KALEEAAKRF QELKAQRESK EALEIEKNSR KPPPYKHIK- ---------- BACU007422/1-1160 KALEEAAKRF QELKAQRESK EALEIEKNSR KPPPYKHIKA NKVIGKVQIQ 1101 1150 ENSBTAP00000053526/1-1440 VADLSEIPRC NCKPADENPC GLESECLNRM LQYECHPQVC PAGERCQNQC ENSTTRP00000004261/1-1434 VADLSEIPRC NCKPADENPC GLESECLNRM LQYECHPQVC PAGERCQNQC bmy_16854T0/1-1044 VADLSEIPRC NCKPADENPC GLESECLNRM LQYECHPQVC PAGERCQNQC BACU007422/1-1160 VADLSEIPRC NCKPADENPC GLESECLNRM LQYECHPQVC PAGERCQNQC 1151 1200 ENSBTAP00000053526/1-1440 FTKRLYPDAE VIRTERRGWG LRTKRSIKKG EFVNEYVGEL IDEEECRLRI ENSTTRP00000004261/1-1434 FTKRLYPDAE IIKTERRGWG LRTKRSIKKG EFVNEYVGEL IDEEECRLRI bmy_16854T0/1-1044 FTKRLYPDAE IIKTERRGWG LRTKRSIKKG EFVNEYVGEL IDEEECRLRI BACU007422/1-1160 FTKRLYPDAE IIKTERRGWG LRTKRSIKKG EFVNEYVGEL IDEEECRLRI 1201 1250 ENSBTAP00000053526/1-1440 KRAHENSVTN FYMLTVTKKD RIIDAGPKGN YSRFMNHSCN PNCETQKWTV ENSTTRP00000004261/1-1434 KRAHENSVTN FYMLTVT-KD RIIDAGPKGN YSRFMNHSCN PNCETQKWTV bmy_16854T0/1-1044 KRAHENSVTN FYMLTVT-KD RIIDAGPKGN YSRFMNHSCN PNCETQKWTV BACU007422/1-1160 KRAHENSVTN FYMLTVT-KD RIIDAGPKGN YSRFMNHSCN PNCETQKWTV 1251 1300 ENSBTAP00000053526/1-1440 NGDVRVGLFA LCDIPAGMEL TFNYNLDCLG NGRTECHCGA DNCSGFLGVR ENSTTRP00000004261/1-1434 NGDVRVGLFA LCDIPAGMEL TFNYNLDCLG NGRTECHCGA DNCSGFLGVR bmy_16854T0/1-1044 NGDVRVGLFA LCDIPAGMEL TFNYNLDCLG NGRTECHCGA DNCSGFLGVR BACU007422/1-1160 NGDVRVGLFA LCDIPAGMEL TFNYNLDCLG NGRTECHCGA DNCSGFLGVR 1301 1350 ENSBTAP00000053526/1-1440 PKSACASTAE EKAKNAKLKP KRRKIKTEPK QLHEDFCFQC GDGGELVMCD ENSTTRP00000004261/1-1434 PKSACASTTE EKAKNAKLKQ KRRKIKTEPK QLHEDHCFQC GDSGELVMCD bmy_16854T0/1-1044 PKSACASTTE EKAKNAKLKQ KRRKIKTEPK QLHEDHCFQC GDGGELVMCD BACU007422/1-1160 PKSACASTTE EKAKNAKLKQ KRRKIKTEPK QLHEDHCFQC GDGGELVMCD 1351 1400 ENSBTAP00000053526/1-1440 RKDCSKAYHL LCLNLPQPPY GKWECPWHQC DECSAAAVAF CEFCPRSFCK ENSTTRP00000004261/1-1434 RKDCPKAYHL LCLNLPQPPY GKWECPWHQC DECGGAAVSF CEFCPRSFCK bmy_16854T0/1-1044 RKDCPKAYHL LCLNLPQPPY GKWECPWHQC DECSGAAVSF CEFCPRSFCK BACU007422/1-1160 RKDCPKAYHL LCLNLPQPPY GKWECPWHQC DECSSAAVSF CEFCPRSFCK 1401 1450 ENSBTAP00000053526/1-1440 DHEKGALVPS ALEGRLCCSE HDPASPVSPE YWSKIKCKLE SQDHGEEVKE ENSTTRP00000004261/1-1434 DHEKGALVPS ALEGRLCCSE HDPVSPVSPE YWSKIKCKLE SQDHGEEVKE bmy_16854T0/1-1044 DHEKGALVPS ALEGRLCCSE HDPVSPVSPE YWSKIKCKLE SQDHGEEVKE BACU007422/1-1160 DHEKGALVPS ALEGRLCCSE HDPVSPVSPE YWSKIKCKLE SQDHGEEVKE