KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:06:07 2014 Check: 00 .. Name: bmy_18773T0/1-422 Len: 632 Check: 9062 Weight: 1.00 Name: ENSTTRP00000013795/1-594 Len: 632 Check: 2695 Weight: 1.00 Name: BACU011074/1-610 Len: 632 Check: 3449 Weight: 1.00 Name: ENSBTAP00000053532/1-584 Len: 632 Check: 3089 Weight: 1.00 // 1 50 bmy_18773T0/1-422 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013795/1-594 MAEMGSKGVT AGKIASNVQK KLTRAQEKVL QKLGKADETK DEQFEQCVQN BACU011074/1-610 -----MKRVS VLRLGVTAAT RPLMVP--VL QKLGKADETK DEQFEQCVQN ENSBTAP00000053532/1-584 ---MGSKGVT AGKIASNVQK KLTRAQEKVL QKLGKADETK DEQFEQCVQN 51 100 bmy_18773T0/1-422 ---------- ----MELWLP GGKC-----Q ELNECLQEVY EPDWPGRDEA ENSTTRP00000013795/1-594 FNKQLTEGTR LQKDLRTYLA SVKAMHEASK KLNECLQEVY EPDWPGRDEA BACU011074/1-610 FNKQLTEGTR LQKDLRTYLA SVKAMHEASK KLNECLQEVY EPDWPGREEA ENSBTAP00000053532/1-584 FNKQLTEGTR LQKDLRTYLA SVKAMHEASK KLNECLQEVY EPDWPGRDEA 101 150 bmy_18773T0/1-422 NKIAENHDLL WVD------- ---------- ---------- -----YHQKL ENSTTRP00000013795/1-594 NKIAENNDLL WVD------- ---------- ---------- -----YHQKL BACU011074/1-610 NKIAENNDLL WVDYHQKLVD QALLTMDTYL GQFPDIKNND LLWVDYHQKL ENSBTAP00000053532/1-584 SKIAENNDLL WMD------- ---------- ---------- -----YHQKL 151 200 bmy_18773T0/1-422 VDQALLTMDT YLGQFPDIKS RIAKRGRKLV DFDSARHHYE SLQTAKKKDE ENSTTRP00000013795/1-594 VDQALLTMDT YLGQFPDIKS RIAKRGRKLV DYDSARHHYE SLQTAKKKDE BACU011074/1-610 VDQALLTMDT YLGQFPDIKS RIAKRGRKLV DFDSARHHYE SLQTAKKKDE ENSBTAP00000053532/1-584 VDQALLTMDT YLGQFPDIKS RIAKRGRKLV DYDSARHHYE SLQTAKKKDE 201 250 bmy_18773T0/1-422 AKIAKPVSLL EKAAPQWCQG KLQAHLVAQT NLLRNQAEEE LIKAQKVFEE ENSTTRP00000013795/1-594 AKIAKPVSLL EKAAPQWCQG KLQAHLVAQT NLLRNQAEEE LVKAQKVFEE BACU011074/1-610 AKIAKPVSLL EKAAPQWCQG NLQAHLVAQT NLLRNQAEEE LIKAQKVFEE ENSBTAP00000053532/1-584 AKIAKPVSLL EKAAPQWCQG KLQAHLVAQT NLLRNQAEEE LIKAQKVFEE 251 300 bmy_18773T0/1-422 MNVDLQEELP SLWNSRVGFY VNTFQSIAGL EENFHKEMSK LNQNLNDVLV ENSTTRP00000013795/1-594 MNVDLQEELP SLWNSRVGFY VNTFQSIAGL EENFHKEMSK LNQNLNDVLV BACU011074/1-610 MNVDLQEELP SLWNSRVGFY VNTFQSIAGL EENFHKEMSK LNQNLNDVLV ENSBTAP00000053532/1-584 MNVDLQEELP SLWNSRVGFY VNTFQSIAGL EENFHKEMSK LNQNLNDVLI 301 350 bmy_18773T0/1-422 SLEKQHGSNT FTIKARPSDN APAKGNKSPS -PPDGSPAAT PEIRVNHEPE ENSTTRP00000013795/1-594 SLEKQHGSNT FTIKAQPSDN APAKGNKSPS PPPDGSPAXX XXXXXXXXXX BACU011074/1-610 SLEKQHGSNT FTIKAQPSDN APAKGNKSPS -PPDGSPAAT PEIRVNHEPE ENSBTAP00000053532/1-584 SLEKQHGSNT FTVKAQPSDN VPAKGNKSPS PPPDGSPAAT PEIRVNHEPE 351 400 bmy_18773T0/1-422 PAGAATPGAA LPKSPSQLRK GPPVPPPPKH TPSKEVKQEQ ILSLFEDTFV ENSTTRP00000013795/1-594 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011074/1-610 PAGAAAPGAA LPKSPSQLRK GPPVPPPPKH TPSKEVKQEQ ILSLFEDTFV ENSBTAP00000053532/1-584 PAGAATPGAT LPKSPSQLRK GPPVPPPPKH TPSKEVKQEQ ILSLFDDTFV 401 450 bmy_18773T0/1-422 PEISVTTPSQ VSRGRRGPAL SPFS-RSFRV CMAFPPLPP- ---------- ENSTTRP00000013795/1-594 XXXXXXXXXX FE------AP GPFSEQASLL DLDFDPLPPV ASPVKAPTPS BACU011074/1-610 PEISVTTPSQ FE------AP GPFSEQASLL DLDFDPLPPV ASPVKAPTPS ENSBTAP00000053532/1-584 PEISVTTPSQ FE------AP GPFSEQASLL DLDFDPLPPV ASPVKAPTPS 451 500 bmy_18773T0/1-422 ---------- PGASASGAGV WLQGSALG-- LSLAHPSLL- -PSTRHPSSL ENSTTRP00000013795/1-594 GQSIPWDLWE PTESPAGSLP SREPSAAEGT FAVAWPSQTA EPGPAQPAEA BACU011074/1-610 GQ-------- PTESPAGSLP SREPSAAEGT FAVAWPSQTA EPGPAQPAEA ENSBTAP00000053532/1-584 GQSIPWDLWE PTESPAGSLP SGEPSAAEGT FAVAWPSQTA EPGPAQPAEA 501 550 bmy_18773T0/1-422 ST-------- ---------- --------WP DVGTWANSPS RDRRLHSGLS ENSTTRP00000013795/1-594 SEVTCGTHPA AGAQEPGETA ASEAASXXXX XXXXXXXXXX XXXXXXXXXX BACU011074/1-610 SEVACGTHPA AGAQEPGETA ASEAASSSLP AVVVETFSAT VNGTVEGGSG ENSBTAP00000053532/1-584 SE-------A AGAQEPGETT TSEAASSSLP AVVVETFSAT VNGTVESGSG 551 600 bmy_18773T0/1-422 VPLMLWPKG- ---------- -AGSTEDLGQ SG-------- ---------- ENSTTRP00000013795/1-594 XXXXXXXXXX XXXVQAQHDY TATDTDELQL KAGDVVLVIP FQNPEEQDEG BACU011074/1-610 AGRLDLPPGF MFKVQAQHDY TATDTDELQL KAGDVVLVIP FQNPEEQDEG ENSBTAP00000053532/1-584 AGRLDLPPGF MFKVQAQHDY TATDTDELQL KAGDVVLVIP FQNPEEQDEG 601 650 bmy_18773T0/1-422 ------KASW SR-------- ---------- -- ENSTTRP00000013795/1-594 WLMGVKESDW NLHKELEKCR GVFPENFTAR VQ BACU011074/1-610 WLMGVKESDW ILHKELEKCR GVFPENFTAR VQ ENSBTAP00000053532/1-584 WLMGVKESDW NQHKELEKCR GVFPENFTER VQ