KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:06:08 2014 Check: 00 .. Name: ENSBTAP00000053533/1-907 Len: 1279 Check: 1203 Weight: 1.00 Name: ENSP00000261965/1-907 Len: 1279 Check: 2841 Weight: 1.00 Name: BACU017403/1-1060 Len: 1279 Check: 1235 Weight: 1.00 Name: bmy_15913T0/1-956 Len: 1279 Check: 1376 Weight: 1.00 Name: ENSTTRP00000010439/1-880 Len: 1279 Check: 9501 Weight: 1.00 // 1 50 ENSBTAP00000053533/1-907 ---------- ---------- ---------- ---------- ---------- ENSP00000261965/1-907 ---------- ---------- ---------- ---------- ---------- BACU017403/1-1060 ---------- ---------- ---------- ---------- ---------- bmy_15913T0/1-956 MGLISVLPRG EAVTAHETPI LGPGPRDPDG VSENSSRSCA AGIGKHRGCW ENSTTRP00000010439/1-880 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053533/1-907 ---------- ---------- --MATPDQKS PNVLLQSLCC RI-------- ENSP00000261965/1-907 ---------- ---------- --MATPDQKS PNVLLQNLCC RI-------- BACU017403/1-1060 ---------- ---------- ---------- ---------- ---------- bmy_15913T0/1-956 LACSPAFLGR LYQISPCSVP QIPQHRRAED PGEQLQKATC RLNTILKNVI ENSTTRP00000010439/1-880 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000053533/1-907 ---------- ---------- ---------- ---LGRSEAD VAQQFQYAVR ENSP00000261965/1-907 ---------- ---------- ---------- ---LGRSEAD VAQQFQYAVR BACU017403/1-1060 ---------- ---------- ---------- ---------D VAQQFQYAVR bmy_15913T0/1-956 CFKNFSFKGP SEAKHLAIMM LDPFINLDSM HLPLQHRIAD VAQQFQYAVR ENSTTRP00000010439/1-880 ---------- ---------- ---------- ---------D VAQQFQYAVR 151 200 ENSBTAP00000053533/1-907 VIGSNFAPTV ERDEFLVAEK IKKELTRQRR EADAALFSEL HRKLHSQGVL ENSP00000261965/1-907 VIGSNFAPTV ERDEFLVAEK IKKELIRQRR EADAALFSEL HRKLHSQGVL BACU017403/1-1060 VIGSNFAPTV ERDEFLVAEK IKKELTRQRR EADAALFSEL HRKLHSQGVL bmy_15913T0/1-956 VIGSNFAPTV ERDEFLVAEK IKKELTRQRR EADAALFSEL HRKLHSQGVL ENSTTRP00000010439/1-880 VIGSNFAPTV ERDEFLVAEK IKKELTRQRR EADAALFSEL HRKLHSQGVL 201 250 ENSBTAP00000053533/1-907 KNKWSVLYLL LSLSEDPRRQ PGKVSNYATL FAQALPRDAH STPYYYARPQ ENSP00000261965/1-907 KNKWSILYLL LSLSEDPRRQ PSKVSSYATL FAQALPRDAH STPYYYARPQ BACU017403/1-1060 KNKWSILYLL LSLSEDPRKQ PNKVSSYATL FAQALPRDAH STPYYYARPQ bmy_15913T0/1-956 KNKWSILYLL LSLSEDPRKQ PNKVSSYATL FAQALPRDAH STPYYYARPQ ENSTTRP00000010439/1-880 KNKWSILYLL LSLSEDPRKQ PNKVSSYATL FAQALPRDAH STPYYYARPQ 251 300 ENSBTAP00000053533/1-907 TLPLNYQERS APSAQSSGSL GSSGI--SSI GVHTLNGPTP PPPSLLPGQS ENSP00000261965/1-907 TLPLSYQDRS AQSAQSSGSV GSSGI--SSI GLCALSGPAP APQSLLPGQS BACU017403/1-1060 TLPLNYQDRS APLAQSSGSL GSSGV--GSG SACTLGGLAP TPQPLLPGQS bmy_15913T0/1-956 TLPLNYQDRS APPAQGSGSL GSSGVGSGSG SVCALGGPAP TPQPLVPGQS ENSTTRP00000010439/1-880 TLPLNYQDRS VPPAQSSGSL GSSGV--SSI GVCALSGPTP TPQPLLPGQS 301 350 ENSBTAP00000053533/1-907 HLGPGTGDCL RQQLGARLAW TLPASQPSLQ TTTSKGVPSA ASRSMTRPRR ENSP00000261965/1-907 NQAPGVGDCL RQQLGSRLAW TLTANQPSSQ ATTSKGVPSA VSRNMTRSRR BACU017403/1-1060 HPAPGAGDCL RQQLGSRLAW TLTANQPPSQ TATSKGVPSA VSRSVTRPRR bmy_15913T0/1-956 HPAPGAGDCL RQQLGSRLAW TLTANQPSSQ TATSKGVPSA VSRSVTRPRR ENSTTRP00000010439/1-880 HPAPGVGDCL RQQLSSRLAW TLTANQPSLQ TTTSKGVPSA VSRNVTRPRR 351 400 ENSBTAP00000053533/1-907 DGDAGGAVEV TEAALVRDIL YVFQGIDGRN IKMSSADNCY KVEGKANLNK ENSP00000261965/1-907 EGDTGGTMEI TEAALVRDIL YVFQGIDGKN IKMNNTENCY KVEGKANLSR BACU017403/1-1060 EGDAGGAVEV AEAALVRDIL YVFQGIDGRN VKMSNADNCY KVEGK----- bmy_15913T0/1-956 EGDAGGAVEV AEAALVRDIL YVFQGIDGRN VKMSNADNCY KVEGKANLNK ENSTTRP00000010439/1-880 EGDAGGAVEV AEAALVRDIL YVFQGIDGKN VKMSNADNCY KVEGKANLNK 401 450 ENSBTAP00000053533/1-907 SLRDTAMRLA ELGWLHNKIR KYTDQRSLDR SFGLVGQSFC AALHQELKEY ENSP00000261965/1-907 SLRDTAVRLS ELGWLHNKIR RYTDQRSLDR SFGLVGQSFC AALHQELREY BACU017403/1-1060 ---------- ---------- ---------- -------SFC AALHQELKEY bmy_15913T0/1-956 SLRDTTVRLA ELGWLHNKIR KYTDQRSLDR SFGLVGQSFC AALHQELKEY ENSTTRP00000010439/1-880 SLRDTTVRLA ELGWLHNKIR KYTDQRSLDR SFGLVGQSFC AALHQELREY 451 500 ENSBTAP00000053533/1-907 YRLLSVLHSQ LQLEDDQGVN LGFESSLTLR RLLVWTYDPK IRLKTLAALV ENSP00000261965/1-907 YRLLSVLHSQ LQLEDDQGVN LGLESSLTLR RLLVWTYDPK IRLKTLAALV BACU017403/1-1060 YRLLSVLHSQ LQLEDDQGVN LGLESSLTLR RLLVWTYDPK IRLKTLAALV bmy_15913T0/1-956 YRLLSVLHSQ LQLEDDQGVN LGLESSLTLR RLLVWTYDPK IRLKTLAALV ENSTTRP00000010439/1-880 YRLLSVLHSQ LQLEDDQGVN LGLESSI-LR RLLLWTYDPK IRLKTLAALV 501 550 ENSBTAP00000053533/1-907 DHCQGRKGGE LASAVHAYTK TGDPSMRSLV QHILSLVSHP VLSFLYRWIY ENSP00000261965/1-907 DHCQGRKGGE LASAVHAYTK TGDPYMRSLV QHILSLVSHP VLSFLYRWIY BACU017403/1-1060 DHCQGRKGGE LASAVHAYTK TGDPSMRSLV QHILSLVSHP VLSFLYRWIY bmy_15913T0/1-956 DHCQGRKGGE LASAVHAYTK TGDPSMRSLV QHILSLVSHP VLSFLYRWIY ENSTTRP00000010439/1-880 DHCQGRKGGE LASAVHAYTK TGDPSMRSLV QHILSLVSHP VLSFLYRWIY 551 600 ENSBTAP00000053533/1-907 DGELEDTHHE FFVASDPTVK TDRLWHDKYT LRTSMIPSFM TMDQSRKVLL ENSP00000261965/1-907 DGELEDTYHE FFVASDPTVK TDRLWHDKYT LRKSMIPSFM TMDQSRKVLL BACU017403/1-1060 DGELEDTYHE FFVASDPTVK TDRLWHDKYT LRKSMIPSFV TMDQSRKVCL bmy_15913T0/1-956 DGELEDTYHE FFVASDPTVK TDRLWHDKYT LRKSMIPSFM TMDQSRKVLL ENSTTRP00000010439/1-880 DGELEDTYHE FFVASDPTVK TDRLWHDKYT LRKSMIPSFM TMDQSRKVLL 601 650 ENSBTAP00000053533/1-907 IGKSINFLHQ VCHDQTPPTK MIAVPRSAEP LQDAADLFTD LENAFQGKID ENSP00000261965/1-907 IGKSINFLHQ VCHDQTPTTK MIAVTKSAES PQDAADLFTD LENAFQGKID BACU017403/1-1060 TCTVLRKLFR ---------- --------DS EMPAADFFTD LENAFQGKID bmy_15913T0/1-956 IGKSINFLHQ VCHDQTPTTK MIAVTKSAES PQDAADFFTD LENAFQGKID ENSTTRP00000010439/1-880 IGKSINFLHQ VCHDQTPTTK MIAVTKSAES PQDAADFFTD LENAFQGKID 651 700 ENSBTAP00000053533/1-907 AAYFETSKYL LDVLNRKYSL LDHMQAVRRY LLLGQGDFIR HLMDLLKPEL ENSP00000261965/1-907 AAYFETSKYL LDVLNKKYSL LDHMQAMRRY LLLGQGDFIR HLMDLLKPEL BACU017403/1-1060 AAYFETSKYL LDVLNKKYSL LDHMQAMRRY LLLGQGDFIR HLMDLLKPEL bmy_15913T0/1-956 AAYFETSKYL LDVLNKKYSL LDHMQAMRRY LLLGQGDFIR HLMDLLKPEL ENSTTRP00000010439/1-880 AAYFETSKYL LDVLNKKYSL LDHMQAMRRY LLLGQGDFIR HLMDLLKPEL 701 750 ENSBTAP00000053533/1-907 ARPATTLYQH NLTGILETAV RATNAQFDSP EILKRLDVRL LEVSPGDTGW ENSP00000261965/1-907 VRPATTLYQH NLTGILETAV RATNAQFDSP EILRRLDVRL LEVSPGDTGW BACU017403/1-1060 ARPATTLYQH NLTGILETAV RATNAQFDSP EALRRLDVRL LEVSPGDTGW bmy_15913T0/1-956 ARPATTLYQH NLTGILETAV RATNAQFDSP EALRRLDVRL LEVSPGDTGW ENSTTRP00000010439/1-880 VRPATTLYQH NLTGILETAV RATNAQFDSP EALRRLDVRL LEXXXXXXXX 751 800 ENSBTAP00000053533/1-907 DVFSLDYHVD GPIATVFTRE CMSHYLRVFN FLWRAKRMEY ILTDIRKGHM ENSP00000261965/1-907 DVFSLDYHVD GPIATVFTRE CMSHYLRVFN FLWRAKRMEY ILTDIRKGHM BACU017403/1-1060 DVFSLDYHVD GPIATVFTRE CMSHYLRVFN FLWRAKRMEY ILTDIRKGHM bmy_15913T0/1-956 DVFSLDYHVD GPIATVFTRE CMSHYLRVFN FLWRAKRMEY ILTDIRKGHM ENSTTRP00000010439/1-880 XXXXXXXXXX XXXXXVFTRE CMSHYLRVFN FLWRAKRMEY ILTDIRKGHM 801 850 ENSBTAP00000053533/1-907 CNAKLLRSLP ---------- ---------- ---------- ---------- ENSP00000261965/1-907 CNAKLLRNMP ---------- ---------- ---------- ---------- BACU017403/1-1060 CNAKLLRNMP GVHRARPSRK --------SH GRCTCQVFTG PALP------ bmy_15913T0/1-956 CNAKLLRNMP GKPRQRACPR LTLGFQQLRK NKSVLKVIEK WFLVLLDLSF ENSTTRP00000010439/1-880 CNAKLLRNMP ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000053533/1-907 ---------E FSGVLHHCHI LASEMVHFIH QMQYYITFE- ---------- ENSP00000261965/1-907 ---------E FSGVLHQCHI LASEMVHFIH QMQYYITFE- ---------- BACU017403/1-1060 ----GSHTVE FSGVLHHCHI LASEMVHFIH QMQYYITFEV RSSQPLILVE bmy_15913T0/1-956 VKTFERKPFK FSGVLHHCHI LASEMVHFIH QMQYYITFE- ---------- ENSTTRP00000010439/1-880 ---------E FSGVLHHCHI LASEMVHFIH QMQYYITFE- ---------- 901 950 ENSBTAP00000053533/1-907 ---------- ---------- ---------- ---------- ------VLEC ENSP00000261965/1-907 ---------- ---------- ---------- ---------- ------VLEC BACU017403/1-1060 VILSQAFVLC SVEGGGHLVS GLRAVLRGRH CASVALASPS GSRHFQVLEC bmy_15913T0/1-956 ---------- ---------- ---------- ---------- ------VLEC ENSTTRP00000010439/1-880 ---------- ---------- ---------- ---------- ------VLEC 951 1000 ENSBTAP00000053533/1-907 SWDELWNQVQ QAQDLDHIIA AHEAFLGTVI SRCLLDSDSR ALLNQLRAVF ENSP00000261965/1-907 SWDELWNKVQ QAQDLDHIIA AHEVFLDTII SRCLLDSDSR ALLNQLRAVF BACU017403/1-1060 SWDELWNKVQ QAQDLDHIIA AHEAFLDTVI SRCLLDADSR ALLNQLRAVF bmy_15913T0/1-956 SWDELWNKVQ QAQDLDHIIA AHEAFLDTVI SRCLLDADSR V--------- ENSTTRP00000010439/1-880 SWDELWNKVQ QAQDLDHIIA AHEAFLDTVI SRCLLDADSR ALLNQLRAVF 1001 1050 ENSBTAP00000053533/1-907 DQIIELQSTQ DAICRAALEE LQRRLQFEDK KKQREAEGQW GVTAAEEEQE ENSP00000261965/1-907 DQIIELQNAQ DAIYRAALEE LQRRLQFEEK KKQREIEGQW GVTAAEEEEE BACU017403/1-1060 DQIIELQNTQ DAIYRAALEE LQRRLRFEER RQQREAEGQW GVTAAEEEQE bmy_15913T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010439/1-880 DQIIELQNTQ DAIYRAALEE LQRRLQFEEK KQQRGAEGQW GVTAAEEEQE 1051 1100 ENSBTAP00000053533/1-907 NQRIREFRES IPKMCSQLRI LTHFYQGVVQ QFLVLLTTSS DESLRFLSFR ENSP00000261965/1-907 NKRIGEFKES IPKMCSQLRI LTHFYQGIVQ QFLVLLTTSS DESLRFLSFR BACU017403/1-1060 NQRVREFQES IPRLCSQLRL LTHFYQGIVQ QFLVLLTTSP DESLSFLSFR bmy_15913T0/1-956 -RRERTVSQS FP-------- ---------- ---------- ---------- ENSTTRP00000010439/1-880 SQRVREFQES IPRLCSQLRI LTHFYQGIVQ QFLVLLTTSP DESLRFLSFR 1101 1150 ENSBTAP00000053533/1-907 LDFNEHYRAR EPR------- ---------- ---------- ---------- ENSP00000261965/1-907 LDFNEHYKAR EPR------- ---------- ---------- ---------- BACU017403/1-1060 LDFNERYRAR EPRXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15913T0/1-956 -------WAR PP-------- ---------- ---------- ---------- ENSTTRP00000010439/1-880 LDFNEHYRAR EPR------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000053533/1-907 ---------- ---------- ---------- ---------- ---------- ENSP00000261965/1-907 ---------- ---------- ---------- ---------- ---------- BACU017403/1-1060 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15913T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010439/1-880 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000053533/1-907 ---------- ---------- ---------- ---------- ---------- ENSP00000261965/1-907 ---------- ---------- ---------- ---------- ---------- BACU017403/1-1060 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15913T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010439/1-880 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000053533/1-907 ---------- ----LRVSLG ARGRRSSHT ENSP00000261965/1-907 ---------- ----LRVSLG TRGRRSSHT BACU017403/1-1060 XXXXXXXXXX XXXXXXXXXX XXGRRSSHT bmy_15913T0/1-956 ---------- ----VQPQPW --------- ENSTTRP00000010439/1-880 ---------- ----LRVSLG ARGRRSSHT