KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:06:09 2014 Check: 00 .. Name: bmy_19444T0/1-367 Len: 695 Check: 569 Weight: 1.00 Name: ENSTTRP00000013781/1-681 Len: 695 Check: 1511 Weight: 1.00 Name: ENSP00000357453/1-653 Len: 695 Check: 8446 Weight: 1.00 Name: BACU020220/1-617 Len: 695 Check: 6352 Weight: 1.00 Name: ENSBTAP00000053539/1-659 Len: 695 Check: 2959 Weight: 1.00 // 1 50 bmy_19444T0/1-367 ---------- ---------- ---------- --MDSGSKLV QLE------- ENSTTRP00000013781/1-681 MPVGGLLPLF SSPAGSGLGG GLGGGLGG-- GRKGSGPAAF RLTEKFVLLL ENSP00000357453/1-653 MPVGGLLPLF SSPAGGVLGG GLGGGG---- GRKGSGPAAL RLTEKFVLLL BACU020220/1-617 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053539/1-659 MPVGGLLPLF SSPAGGGLGG GLGGGGGSSS GRKGSGPAAF RLTEKFVLLL 51 100 bmy_19444T0/1-367 ---------- -----MSPTT KILNS----- -----ESTDR EEG------- ENSTTRP00000013781/1-681 VFSAFITLCF GAIFFLPDSS KLLSGVLFHS NPALQPPADR KPGPGARAED ENSP00000357453/1-653 VFSAFITLCF GAIFFLPDSS KLLSGVLFHS SPALQPAADH KPGPGARAED BACU020220/1-617 ---------- -----XPDSS KLLSGVLFLS SPALQPPADR KPGPGARAED ENSBTAP00000053539/1-659 VFSAFITLCF GAIFFLPDSS KLLSGVLFHS SPALQPAADH KPGPGARAED 101 150 bmy_19444T0/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013781/1-681 AANGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000357453/1-653 AAEGRARRRE EGAPGDPEAA LEDNLARIRE NHERALREAK ETLQKLPEEI BACU020220/1-617 GADGRARRGE EGAPGDPAAA VEDNLARIRE NHERALREAK ETLQKLPEEI ENSBTAP00000053539/1-659 AAEGRARRGE EDAPGDPAAS LEDNLARIRE NHERALREAK ETLQKLPEEI 151 200 bmy_19444T0/1-367 ---------- ---------- ---------- -----ITLVE NVTEEVALQK ENSTTRP00000013781/1-681 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX--XXXXX XXXXXXXXXX ENSP00000357453/1-653 QRDILLEKKK VAQDQLRDKA PFRGLPPVDF VPP--IGVES REPADAAIRE BACU020220/1-617 QRDILMEKEK VAQDQLSNRV GFKMLPPVDL APL--VGAID REPADAAIRE ENSBTAP00000053539/1-659 QRDILMEKEK VAQDQLSNRA GFRRLPPVYL APVNTIGAID REPADAAIRE 201 250 bmy_19444T0/1-367 NKRKH----- ---------- ---------- ---FIMFSNK VTKSYIF--- ENSTTRP00000013781/1-681 XXXXXKEEIE ADRVQASCPR LQSSWVLTWD LTWMMKHAWN NYKRYAWGKN ENSP00000357453/1-653 KRAKIKE--- ---------- ---------- ---MMKHAWN NYKGYAWGLN BACU020220/1-617 KREKIKEEVE ADRVQASCPR LQSSWVLTWD LT-MMKHAWN NYKRYAWGKN ENSBTAP00000053539/1-659 KREKIKE--- ---------- ---------- ---MMKHAWK NYKRYAWGKN 251 300 bmy_19444T0/1-367 ---------- ---------- ---VSAL--I YLI------- ---------- ENSTTRP00000013781/1-681 ELKPVSKGGH SSSLFGNIQG ATIVDALDTL FIMKMKDEFE EAKAWVDENL ENSP00000357453/1-653 ELKPISKGGH SSSLFGNIKG ATIVDALDTL FIMEMKHEFE EAKSWVEENL BACU020220/1-617 ELKPVSKGGH SSSLFGNIQG ATIVDALDTL FIMKMKDEFE EAKAWVDENL ENSBTAP00000053539/1-659 ELKPVSKGGH SSSLFGNIQG ATIVDALDTL FIMNMKDEFE EAQAWVEENL 301 350 bmy_19444T0/1-367 ---------- --ISLKYISD FLLINHINSR E--------- ---QMPAYKR ENSTTRP00000013781/1-681 NFNMNAEVSV FEVNIRFVGG LISAYYLSGE EIFRKKAVEL GVKLLPAFHT ENSP00000357453/1-653 DFNVNAEISV FEVNIRFVGG LLSAYYLSGE EIFRKKAVEL GVKLLPAFHT BACU020220/1-617 NFNMNAEVSV FEVNIRFVGG LISAYYLSGE EIFRKKAVEL GVKLLPAFHT ENSBTAP00000053539/1-659 NFNVNAEVSV FEVNIRFVGG LISAYYLSGA EIFRKKAVEL GVKLLPAFQT 351 400 bmy_19444T0/1-367 FRG------- ---------H YEEGQKE--- ---SVVLEHP SFTFWVTNTL ENSTTRP00000013781/1-681 PSGIPWALLN IKSGIGRNWP WASGGSSILA EFGTLHLEFI HLSYLSGNPI ENSP00000357453/1-653 PSGIPWALLN MKSGIGRNWP WASGGSSILA EFGTLHLEFM HLSHLSGNPI BACU020220/1-617 PSGIPWALLN IKSGIGRNWP WASGGSSILA EFGTLHLEFI HLSYLSGNPI ENSBTAP00000053539/1-659 PSGIPWALLN IKSGIGRNWP WASGGSSILA EFGTLHLEFM HLSYLSGNPI 401 450 bmy_19444T0/1-367 ---------- ---------- ---------- -----HHVSV GGLGDSFYEY ENSTTRP00000013781/1-681 FADKVMNIRT VLNNLEKPQG LYPNYLNPNS GQWAQYHVSV GGLGDSFYEY ENSP00000357453/1-653 FAEKVMNIRT VLNKLEKPQG LYPNYLNPSS GQWGQHHVSV GGLGDSFYEY BACU020220/1-617 FADKVMNIRT VLNNLEKPQG LYPNYLNPNS GQWAQYHVSV GGLGDSFYEY ENSBTAP00000053539/1-659 FADKVMNIRT VLNNLEKPEG LYPNYLNPNS GQWAQYHVSV GGLGDSFYEY 451 500 bmy_19444T0/1-367 LLKAWLMSDK TDLQAKKMYF DAIKAIETHL IRKSRNGLTY IAEWKGGLLE ENSTTRP00000013781/1-681 LLKAWLMSDK TDLQAKKMYF DAIKXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000357453/1-653 LLKAWLMSDK TDLEAKKMYF DAVQAIETHL IRKSSSGLTY IAEWKGGLLE BACU020220/1-617 LLKAWLMSDK TDLQAKKMYF DAIKAIETHL IRKSRNGLTY IAEWKGGLLE ENSBTAP00000053539/1-659 LLKAWLMSDK TDLQAKKMYF DAIKAIETHL IRKSRNGLTY IAEWKGGLLE 501 550 bmy_19444T0/1-367 HKMGHLTCFA GGMFALGADN APEGLTQHYL QLGAEIA--- -------LAK ENSTTRP00000013781/1-681 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVK ENSP00000357453/1-653 HKMGHLTCFA GGMFALGADA APEGMAQHYL ELGAEIARTC HESYNRTFMK BACU020220/1-617 HKMGHLTCFA GGMFALGADN APEGLTQHYL QLGAEIARTC HESYNRTFAK ENSBTAP00000053539/1-659 HKMGHLTCFA GGMFALGADD APEGMTQHYL QLGAEIARTC HESYNRTFVK 551 600 bmy_19444T0/1-367 LGPEAFRFDG GVEAIATRQN EKYYILRPEV VETYMYMWRL THDPKYRKWA ENSTTRP00000013781/1-681 LGPEAFRFDG GVEAIVTRQN EKYYILRPEV VETYMYMWRL THDPKYRKWA ENSP00000357453/1-653 LGPEAFRFDG GVEAIATRQN EKYYILRPEV METYMYMWRL THDPKYRKWA BACU020220/1-617 LGPEAFRFDG GVEAIATRQN EKYYILRPEV VETYMYMWRL THDPKYRKWA ENSBTAP00000053539/1-659 LGPEAFRFDG GVEAIATRQN EKYYILRPEV VETYMYMWRL THDPKYRKWA 601 650 bmy_19444T0/1-367 WEAVEALEKH CRVKGGYSGL RDVYFHKESY DDVQQSFFLA ETLKNHYISF ENSTTRP00000013781/1-681 WEAVEALEKH CRVKGGYSGL RDVYFHKESY DDVQQSFFLA ETLKYLYLIF ENSP00000357453/1-653 WEAVEALENH CRVNGGYSGL RDVYLLHESY DDVQQSFFLA ETLKYLYLIF BACU020220/1-617 WEAVEALEKH CRVKGGYSGL RDVYFHKESY DDVQQSFFLA ETLKYLYLIF ENSBTAP00000053539/1-659 WEAVEALEKH CRVKGGYSGL RDVYFTKESY DDVQQSFFLA ETLKYLYLIF 651 700 bmy_19444T0/1-367 R---FFRFEK STFSNVFMKA GFNSERIFAN VSIHGQLRKI ----- ENSTTRP00000013781/1-681 SDDDLLPLEH WI-------- -FNTEAHLLP V-LSRNIKKV EVNEK ENSP00000357453/1-653 SDDDLLPLEH WI-------- -FNSEAHLLP I-LPKDKKEV EIREE BACU020220/1-617 SDDDLLPLEH WI-------- -FNTEAHLLP V-LSRDIKKV EVNEK ENSBTAP00000053539/1-659 SDDDLLPLEH WI-------- -FNTEAHLLP V-LSRNLKKV EDDGK