KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:06:54 2014 Check: 00 .. Name: bmy_02616T0/1-1230 Len: 1412 Check: 6476 Weight: 1.00 Name: ENSP00000262811/1-1309 Len: 1412 Check: 3463 Weight: 1.00 Name: ENSTTRP00000005509/1-1305 Len: 1412 Check: 3317 Weight: 1.00 Name: BACU016669/1-1283 Len: 1412 Check: 8547 Weight: 1.00 Name: ENSBTAP00000053558/1-1329 Len: 1412 Check: 5581 Weight: 1.00 // 1 50 bmy_02616T0/1-1230 MKSRRDKLHI PALTLDRPES HRRLQGALPG QRSGLTLAAC ARPSIPGLRP ENSP00000262811/1-1309 ---------- ---------- MDESSLLR-- RRG------- ---------- ENSTTRP00000005509/1-1305 ---------- ---------- MDEPSLLR-- RRG------- ---------- BACU016669/1-1283 ---------- ------MSDP SYWTAVAAPG HRS------- ---------- ENSBTAP00000053558/1-1329 MKSRRDKLHI PALTLDLSPS SQSPSLLSPS SPC------- ---------- 51 100 bmy_02616T0/1-1230 LLPKETTTPV PSPDSATRRG R-CQVHRPRP LSLQSVSKQP EPVLAEPQQP ENSP00000262811/1-1309 -LQKELSLP- -------RRG RGCRSGNRKS LVVGT----P SPTLSRPLSP ENSTTRP00000005509/1-1305 -LQKELSLP- -------RRG RGCRSGNRKS LVVGT----P SPTLSRPLSP BACU016669/1-1283 -RLAKGALL- -------QRS KSCRSGNRKS LVVGT----P SPTLSRPLSP ENSBTAP00000053558/1-1329 -SPCSPSLG- -------LHP WSCRSGNRKS LVVGT----P SPTLSRPLSP 101 150 bmy_02616T0/1-1230 LQPLQPLAGP APLEQAAAPW IVLGTSQLHL LSTSLLPGVG PRSASHSACP ENSP00000262811/1-1309 LS--VPTAGS SPLD------ ---------- ---------S PRNFSAASAL ENSTTRP00000005509/1-1305 LS--IPTAGS SPLD------ ---------- ---------S PRNFSAASAI BACU016669/1-1283 LS--IPTAGS SPLD------ ---------- ---------S PRNFSAASAV ENSBTAP00000053558/1-1329 LS--IPTAGS SPLD------ ---------- ---------S PRNFSAASAI 151 200 bmy_02616T0/1-1230 WSPLAAGAVP SFQLLILSRA DGRRWSLASL PSSGYGTNTP SSTVSSSSSS ENSP00000262811/1-1309 NFPFA----- -------RRA DGRRWSLASL PSSGYGTNTP SSTLSSSSSS ENSTTRP00000005509/1-1305 NFPFA----- -------RRA DGRRWSLASL PSSGYGTNTP SSTVSSSSSS BACU016669/1-1283 NFPFA----- -------R-- ---------- ---------- ---------- ENSBTAP00000053558/1-1329 NFPFA----- -------RRA DGRRWSLASL PSSGYGTNTP SSTVSSSSSS 201 250 bmy_02616T0/1-1230 RERLHQLPFQ PTPDELCFLS KHFRSSESMA DEEGGHHSPR LRPRSRSLSP ENSP00000262811/1-1309 RERLHQLPFQ PTPDELHFLS KHFRSSENVL DEEGGR-SPR LRPRSRSLSP ENSTTRP00000005509/1-1305 RERLHQLPFQ PTPDELCFLS KHFRSSESMV DEEGGHHSPR LRPRSRSLSP BACU016669/1-1283 REHLHQLPFQ PTPDELCFLS KHFRSSESMA DEEGGH-SPR LRPRSRSLSP ENSBTAP00000053558/1-1329 RERLHQLPFQ PTPDELCFLS KHFRSSDSVA DEEGGHRSPR LRPRSRSLSP 251 300 bmy_02616T0/1-1230 GRTTGAFDNE IVMMNHVYRE RFPKATAQME GRLQEFLATF SPGAQLALAD ENSP00000262811/1-1309 GRATGTFDNE IVMMNHVYRE RFPKATAQME GRLQEFLTAY APGARLALAD ENSTTRP00000005509/1-1305 GRTTGAFDNE IVMMNHVYRE RFPKATAQME GRLQEFLAAF SPGARLALAD BACU016669/1-1283 GRTTGAFDNE IVMMNHVYRE RFPKATAQME GRLQEFLATF SPGAQLALAD ENSBTAP00000053558/1-1329 GRTTGTFDNE IVMMNHVYRE RFPKATAQME GRLQEFLAAF SPGARLALAD 301 350 bmy_02616T0/1-1230 GVLGFIHHQI IELARDCLAK SGEALVTSRY FLEMQEKLER LLQDAHERSD ENSP00000262811/1-1309 GVLGFIHHQI VELARDCLAK SGENLVTSRY FLEMQEKLER LLQDAHERSD ENSTTRP00000005509/1-1305 GVLGFIHHQI IELARDCLAK SGEALVTSRY FLEMQEKLER LLQDAHERSD BACU016669/1-1283 GVLGFIHHQI IELARDCLAK SGEALVTSRY FLEMQEKLER LLQDAHERSD ENSBTAP00000053558/1-1329 GVLGFIHHQI IELARDCLAK SGEALVTSRY FLEMQEKLER LLQDAHERSD 351 400 bmy_02616T0/1-1230 SEEVGFIVQL VRKLLIIISR PARLLECL-- ---------- ---------- ENSP00000262811/1-1309 SEEVSFIVQL VRKLLIIISR PARLLECLEF DPEEFYHLLE AAEGHAREGQ ENSTTRP00000005509/1-1305 SEEVGFIVQL VRKLLVIISR PARLLECLEF DPEEFYHLLE AAEGQAREGQ BACU016669/1-1283 SEEVGFIVQL VRKLLIIISR PARLLECLEF DPEEFYHLLE AAEGQAREGQ ENSBTAP00000053558/1-1329 SEEVGFIVQL VRKLLIIISR PARLLECLEF DPEEFYHLLE AAEGQAREGQ 401 450 bmy_02616T0/1-1230 ---------- ---------- ---MVPLSHL DDSGGQPPAP --ESPESRAL ENSP00000262811/1-1309 GIKTDLPQYI IGQLGLAKDP LEEMVPLSHL EEE--QPPAP --ESPESRAL ENSTTRP00000005509/1-1305 GIKTDLPRYI IGQLGLAK-- ISETVPLSHL DDGGGQPPAP APESPESRAL BACU016669/1-1283 GIKTDLPRYI IGQLGLAKDP LQEMVPLSHL DDSGGQPPAP --ESPESRAL ENSBTAP00000053558/1-1329 GIKTDLPQYI IGQLGLAKDP LQEMVPLSHL DDNGGQPPAP E-ESPESRAL 451 500 bmy_02616T0/1-1230 VGPSRRKPCE SDFETIKLIS NGAYGAVYLV RHRETRQRFA IKKINKQNLI ENSP00000262811/1-1309 VGQSRRKPCE SDFETIKLIS NGAYGAVYLV RHRDTRQRFA IKKINKQNLI ENSTTRP00000005509/1-1305 VGPSRRKPCE SDFETIKLIS NGAYGAVYLV RHRETRQRFA IKKINKQNLI BACU016669/1-1283 VGPSRRKPCE SDFETIKLIS NGAYGAVYLV RHRETRQRFA IKKINKQNLI ENSBTAP00000053558/1-1329 VGPSRRKPCE SDFETIKLIS NGAYGAVYLV RHRETRQRFA IKKINKQNLM 501 550 bmy_02616T0/1-1230 LRNQIQQVFV ERDILTFAEN PFVVSMFCSF ETRRHLCMVM EYVEGGDCAT ENSP00000262811/1-1309 LRNQIQQVFV ERDILTFAEN PFVVSMFCSF ETRRHLCMVM EYVEGGDCAT ENSTTRP00000005509/1-1305 LRNQIQQVFV ERDILTFAEN PFVVSMFCSF ETRRHLCMVM EYVEGGDCAT BACU016669/1-1283 LRNQIQQVFV ERDILTFAEN PFVVSMFCSF ETRRHLCMVM EYVEGGDCAT ENSBTAP00000053558/1-1329 LRNQIQQVFV ERDILTFAEN PFVVSMFCSF ETRRHLCMVM EYVEGGDCAT 551 600 bmy_02616T0/1-1230 LLKNMGPLPV DMARMYFAET VLALEYLHNY GIVHRDLKPD NLLITSLGHI ENSP00000262811/1-1309 LLKNMGPLPV DMARLYFAET VLALEYLHNY GIVHRDLKPD NLLITSLGHI ENSTTRP00000005509/1-1305 LLKNMGPLPV DMARMYFAET VLALEYLHNY GIVHRDLKPD NLLITSLGHI BACU016669/1-1283 LLKNMGPLPV DMARMYFAET VLALEYLHNY GIVHRDLKPD NLLITSLGHI ENSBTAP00000053558/1-1329 LLKNMGPLPV DMARMYFAET VLALEYLHNY GIVHRDLKPD NLLITSLGHI 601 650 bmy_02616T0/1-1230 KLTDFGLSKI GLMSMATNLY EGHIEKDTRE FVDKQVCGTP EYIAPEVIFR ENSP00000262811/1-1309 KLTDFGLSKI GLMSMATNLY EGHIEKDARE FIDKQVCGTP EYIAPEVIFR ENSTTRP00000005509/1-1305 KLTDFGLSKI GLMSMATNLY EGHIEKDTRE FVDKQVCGTP EYIAPEVIFR BACU016669/1-1283 KLTDFGLSKI GLMSMATNLY EGHIEKDTRE FVDKQVCGTP EYIAPEVIFR ENSBTAP00000053558/1-1329 KLTDFGLSKI GLMSMATNLY EGHIEKDTRE FVDKQVCGTP EYIAPEVIFR 651 700 bmy_02616T0/1-1230 QGYGKPVDWW AMGVVLYEFL VGCVPFFGDT PEELFGQVVS ---------- ENSP00000262811/1-1309 QGYGKPVDWW AMGVVLYEFL VGCVPFFGDT PEELFGQVVS DEIMWPEGDE ENSTTRP00000005509/1-1305 QGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVVS DEIMWPEGDE BACU016669/1-1283 QGYGKPVDWW AMGVVLYEFL VGCVPFFGDT PEELFGQVVS DEIMWPEGDE ENSBTAP00000053558/1-1329 QGYGKPVDWW AMGVVLYEFL VGCVPFFGDT PEELFGQVVS DEIMWPEGEE 701 750 bmy_02616T0/1-1230 ---------- ---------- ----GGTHEV KQHPFFWTLD WAGLLRHKAE ENSP00000262811/1-1309 ALPADAQDLI TRLLRQSPLD RLGTGGTHEV KQHPFFLALD WAGLLRHKAE ENSTTRP00000005509/1-1305 ALPADAQDLI TRLLRQSPLD RLGTGGTHEV KQHPFFWTLD WAGLLRHKAE BACU016669/1-1283 ALPADAQDLI TRLLRQSPLD RLGTGGTHEV KQHPFFWTLD WAGLLRHKAE ENSBTAP00000053558/1-1329 ALPADAQDLI TRLLRQSPLD RLGTGGTHEV KQHPFFWTLD WAGLLRHKAE 751 800 bmy_02616T0/1-1230 FVPQLEAEDD TSYFDR---- ---------- ---------- ---------- ENSP00000262811/1-1309 FVPQLEAEDD TSYFDTRSER YRHLGSEDDE TNDEESSTEI PQFSSCSHRF ENSTTRP00000005509/1-1305 FVPQLEAEDD TSYFDTRSER YRHLGSEDDE TNDEESSTEI PQFSSCSHRF BACU016669/1-1283 FVPQLEAEDD TSYFDTRSER YRHLGSEDDE TNDEESSTEI PQFSSCSHRL ENSBTAP00000053558/1-1329 FVPQLEAEDD TSYFDTRSER YRHLGSEDDE TNDEESSTEI PQFSSCSHRF 801 850 bmy_02616T0/1-1230 ---------- ---------- ---------- ----WERSSE GDYGRRLSIT ENSP00000262811/1-1309 ----SKVYSS SEFLAVQPTP TFAERSFSED REEGWER-SE VDYGRRLS-A ENSTTRP00000005509/1-1305 ----SKVYSS SEFLAVQPTP TFAERSFSED REEGWERSSE GDYGRRLSTT BACU016669/1-1283 YVFRDVVYSS SEFLAAQPTP TFAERSFSED REEGWERSSE GDYGRRLSIT ENSBTAP00000053558/1-1329 ----SKVYSS SEFLAAQPTP TFAERSFSED REEGWERSSE GNYGRRLSTT 851 900 bmy_02616T0/1-1230 EVRLRSCTSS GSSCHLSFSQ PERGPSPSFL NTINLDTMPK FAFSSEDEGA ENSP00000262811/1-1309 DIRLRSWTSS GSSCQSSSSQ PERGPSPSLL NTISLDTMPK FAFSSEDEGV ENSTTRP00000005509/1-1305 EVRLRSCTSS GSSCHLPFSQ PERGPSPSFL NTINLDTMPK FAFSSEDEGV BACU016669/1-1283 EVRLRSCTSS GSSCHLSFSQ PERGPSPSFL NTINLDTMPK FAFSSEDEGA ENSBTAP00000053558/1-1329 EVRLRSCTSS GSSCHSSSSQ PERGPSPSLL NTISLDTMPK FAFSSEDEGA 901 950 bmy_02616T0/1-1230 GPAPVGPKRP VFILGEPDPP PAATPLTQLP SATHAYEATA PVHDTLRRGP ENSP00000262811/1-1309 GPGPAGPKRP VFILGEPDPP PAATPVMPKP SSLSA-DTAA LSHARLRSNS ENSTTRP00000005509/1-1305 GPAPVGPKRP VFILGEPDPP PAATPVLPKP SSLSA-DTAA LSHARLRSNS BACU016669/1-1283 GPAPVGPKRP VFILGEPDPP PAATPVMPKP SSLSA-DTAA LSHARLRSNS ENSBTAP00000053558/1-1329 GPGPVGPKRP IFILGEPDAP PETTPVIPKP SSLSA-DTAA LSHARLRSNS 951 1000 bmy_02616T0/1-1230 W--------- MPAGAAAL-- GARETQPLRN PGPP------ -PAG------ ENSP00000262811/1-1309 IGARHSTPRP LDAGRGRRLG GPRDPAPEKS RASSSGGSGG GSGGRVPKSA ENSTTRP00000005509/1-1305 TGARHSTPRA LDAGRGRRLG GPRDSAPEKS RTSP------ -SGGRVPKSA BACU016669/1-1283 TGARHSTPRA LDAGRGRRLG GPRDSAPEKS RTSP------ -SGGRVPKSA ENSBTAP00000053558/1-1329 TGARHSTPRA LDAGRGRRLG SQRDSAPEKS RTSP------ -SGGRVPKSA 1001 1050 bmy_02616T0/1-1230 -------VAC PNDGSGGPLM SPLSPRSLSS NPSSRDSSPS RDPSPVCGSL ENSP00000262811/1-1309 SVSALSLIIT ADDGSGGPLM SPLSPRSLSS NPSSRDSSPS RDPSPVCGSL ENSTTRP00000005509/1-1305 SVSALSLIIT AXDGSGGP-M SPLSPRSLSS NPSSRDSSTS RDPSPVRGSL BACU016669/1-1283 SVSALSLIIT ADDGSGGPLM SPLSPRSVSS NPSSRDSSPS RDPSPVCGSL ENSBTAP00000053558/1-1329 SVSALSLIIT ADDGSGGPLM SPLSPRSLSS NPSSRDSSPS RDPSPVCGSL 1051 1100 bmy_02616T0/1-1230 RPPIVIHSSG KKYGFSLRAI RVYMGDSDIY TVHHVVWNVE EGSPAQEAGL ENSP00000262811/1-1309 RPPIVIHSSG KKYGFSLRAI RVYMGDSDVY TVHHVVWSVE DGSPAQEAGL ENSTTRP00000005509/1-1305 RPPIVIHSSG KKYGFSLRAI RVYMGDSDIY TVHHVVWSVE EGSPAQEAGL BACU016669/1-1283 RPPIVIHSSG KKYGFSLRAI RVYMGDSDIY TVHHVVWNVE EGSPAQEAGL ENSBTAP00000053558/1-1329 RPPIVIHSSG KKYGFNLRAI RVYMGDSDVY TVHHVVWSVE EGSPAQEAGL 1101 1150 bmy_02616T0/1-1230 RAGDLITHIN GESVLGLVHM DVVELLLKSG NKIALRTTPL ENTSIKVGPA ENSP00000262811/1-1309 RAGDLITHIN GESVLGLVHM DVVELLLKSG NKISLRTTAL ENTSIKVGPA ENSTTRP00000005509/1-1305 RAGDLITHIN GESVLGLVHM DVVELLLKSG NKIALRTTPL ENTSIKVGPA BACU016669/1-1283 RAGDLITHIN GESVLGLVHM DVVELLLKSG NKIALRTTPL ENTSIKVGPA ENSBTAP00000053558/1-1329 RAGDLITHIN GESVLGLVHM DVVELLLKSG NKIALRTTAL ENTSIKVGPA 1151 1200 bmy_02616T0/1-1230 RKNVTKGRMA RRNKRSRRRE TQDRRKSLFK KISKQSSVLH TSRSFSSGLH ENSP00000262811/1-1309 RKNVAKGRMA RRSKRSRRRE TQDRRKSLFK KISKQTSVLH TSRSFSSGLH ENSTTRP00000005509/1-1305 RKNVTKGRMA RRNKRSRRRE TQERRKSLFK KISKQSSVLH TSRSFSSGLH BACU016669/1-1283 RKNVTKGRMA RRNKRSRRRE TQDRRKSLFK KISKQSSVLH TSRSFSSGLH ENSBTAP00000053558/1-1329 RKNVTKGRMA RRSKRSRRRE TQDRRKSLFK KISKQSSVLH TSRSFSSGLH 1201 1250 bmy_02616T0/1-1230 HSLSSSESLP GSPTHSLSPS PTTPCCSPAP DAPAD-TVSP PSASPSSSSP ENSP00000262811/1-1309 HSLSSSESLP GSPTHSLSPS PTTPCRSPAP DVPADTTASP PSASPSSSSP ENSTTRP00000005509/1-1305 HSLSSSESLP GSPTHSLSPS PTTPCCSPAP DAPAD-TVSP PSASPSSSSP BACU016669/1-1283 HSLSSSESLP GSPTHSLSPS PTTPCCSPAP DAPAD-TVSP PSASPSSSSP ENSBTAP00000053558/1-1329 QSLSSSESLP GSPTHSLSPS PTTPCRSPAP DAPAD-TASP PSISPSSSSP 1251 1300 bmy_02616T0/1-1230 ASPAAAGHTR PSSLHGLATK LGPPRPKAGR RKSTSSIPPS PLACPPVPAP ENSP00000262811/1-1309 ASPAAAGHTR PSSLHGLAAK LGPPRPKTGR RKSTSSIPPS PLACPPISAP ENSTTRP00000005509/1-1305 ASPAAAGHTR PSSLHGLATK LGPPRPKTGR RKSTSSIPPS PLACPPVPAP BACU016669/1-1283 ASPAAAGHTR PSSLHGLATK LGPPRPKAGR RKSTSSIPPS PLACPPVSAP ENSBTAP00000053558/1-1329 ASPAAAGHTR PSSLHGLAAK LGPPRPKAGR RKSTSSIPPS PLACPPVPAP 1301 1350 bmy_02616T0/1-1230 PPRSPSPLPG HPPVPARSPR LRRGQSADKL GTGERLDGEL GRRSRGPDSE ENSP00000262811/1-1309 PPRSPSPLPG HPPAPARSPR LRRGQSADKL GTGERLDGEA GRRTRGPEAE ENSTTRP00000005509/1-1305 PPRSPSPLPG HPPAPARSPR LRRGQSADKL GTGERLDGEL GRRSRGPDSE BACU016669/1-1283 PPRSPSPLPG HPPVPARSPR LRRGQSADKL GTGERLDGEL GRRSRGPDSE ENSBTAP00000053558/1-1329 PPRSPSPLSG HPPVPARSPR LRRGQSADKL GTGERLDGDL GRRSRGPDSE 1351 1400 bmy_02616T0/1-1230 LVVMRRLHLS ERRDSFKKQE AVQEVSFDEP PEEATGPPTL VPQIAVEGAE ENSP00000262811/1-1309 LVVMRRLHLS ERRDSFKKQE AVQEVSFDEP QEEATGLPTS VPQIAVEGEE ENSTTRP00000005509/1-1305 LVVMRRLHLS ERRDSFKKQE AVQEVSFDEP PEEATGPPTL VPQIAVEGAE BACU016669/1-1283 LVVMRRLHLS ERRDSFKKQE AVQEVSFDEP PEEATGPPTL VPQIAVEGAE ENSBTAP00000053558/1-1329 LVIMRRLHLS ERRDSFKKQE AVQEVSFDEP LEEATGPPTL VPQIAVEGAE 1401 1450 bmy_02616T0/1-1230 AVPGALGPYE KD ENSP00000262811/1-1309 AVPVALGPTG RD ENSTTRP00000005509/1-1305 AVPGALGPFE KD BACU016669/1-1283 AVPGALGPYE KD ENSBTAP00000053558/1-1329 AVSGALGPSR KD