KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:06:55 2014 Check: 00 .. Name: ENSTTRP00000008685/1-1320 Len: 1371 Check: 7401 Weight: 1.00 Name: ENSBTAP00000053560/1-1292 Len: 1371 Check: 3322 Weight: 1.00 Name: ENSP00000436926/1-1324 Len: 1371 Check: 8892 Weight: 1.00 Name: bmy_12505T0/1-1328 Len: 1371 Check: 2042 Weight: 1.00 Name: BACU010167/1-1276 Len: 1371 Check: 2952 Weight: 1.00 // 1 50 ENSTTRP00000008685/1-1320 VLHLFVATRG TA-MDSLDHM LTDPLELGPC GDGHGTRIME DCLLGGTRVS ENSBTAP00000053560/1-1292 ---------- ---MDSLDHM LTDPLELGPC GDGQGSRIME DCLLGGTRVS ENSP00000436926/1-1324 MHVFVQSTCG EETMDSLDHM LTDPLELGPC GDGHGTRIME DCLLGGTRVS bmy_12505T0/1-1328 ---------- ---MDSLDHM LTDPLELGPC GDGHGTRIME DCLLGGTRVS BACU010167/1-1276 ---------- ---MDSLDHM LTDPLELGPC GDGHGTRIME DCLLGGTRVS 51 100 ENSTTRP00000008685/1-1320 LPEDLLEDPE IFFDVVSFST WQEVLSASQR EHLQQFLPRF PEDSTEQQXX ENSBTAP00000053560/1-1292 LPEDLLEDPE IFFDVVSLST WQEVLSDSQR EHLQQFLPLF PEDSMEQQNQ ENSP00000436926/1-1324 LPEDLLEDPE IFFDVVSLST WQEVLSDSQR EHLQQFLPQF PEDSAEQQNE bmy_12505T0/1-1328 LPEDLLEDPE IFFDVVSFST WREVLSGSQR EHLQQFLPRL PEDGTEHQDE BACU010167/1-1276 LPEDLLEDPE IFFDVVSFST WREVLSDSQR EHLQQFLPRF PEDGIDQQDE 101 150 ENSTTRP00000008685/1-1320 XXXXXXXXXX XXXXXXXXXX XXXXXXGHFN PEVVKYRQLC FRSQYKRYLS ENSBTAP00000053560/1-1292 LILALFSGEN FRFGNPLHIA QKLFRDGHFN PEVVKYRQLC FRSQYKRYLS ENSP00000436926/1-1324 LILALFSGEN FRFGNPLHIA QKLFRDGHFN PEVVKYRQLC FKSQYKRYLN bmy_12505T0/1-1328 LVLALFRGEN FRFGNPLHIA QKLFRDGHFN PEVVKYRQLC FRSQYKRYLS BACU010167/1-1276 LVLALFSGEN FRFGNPLHIA QKLFRDGHFN PEVVKYRQLC FRSQYKRYLS 151 200 ENSTTRP00000008685/1-1320 SQQQYFHRLL KQILASRSDL LEMARRSGPT LPSRQKRPSP SRTPEEREWR ENSBTAP00000053560/1-1292 SQQQYFHRLL KQILASRSDL LEMARRSGPA FPSRQKRPWP SRAPEEREWR ENSP00000436926/1-1324 SQQQYFHRLL KQILASRSDL LEMARRSGPA LPFRQKRPSP SRTPEEREWR bmy_12505T0/1-1328 SQQQYFHRLL KQILASRSDL LEMARRSGPA LPSRQKRPSP SRTPEEREWR BACU010167/1-1276 SQQQYFHRLL KQILASRSDL LEMARRSGPA LPSRQKRPSP SRPPEEREWR 201 250 ENSTTRP00000008685/1-1320 TQQRYLKVLR EVKEECGDSA LSSDEEGRLD LQENFSFADL SSWLPSSPAR ENSBTAP00000053560/1-1292 TQQRYLKVLR EVKEECGDTA LSSDEE---- -------EDL SSWLPSSPAR ENSP00000436926/1-1324 TQQRYLKVLR EVKEECGDTA LSSDEEATLD LQEQFSFEDL SSWLPSSPAR bmy_12505T0/1-1328 TQQRYLKVLR EVKEECGDSA LSSDEE---- --------DL SSWLPSSPAR BACU010167/1-1276 TQQRYLKVLR EGREECGDSA LSSDEE---- --------DL SSWLPSSPAR 251 300 ENSTTRP00000008685/1-1320 SPSPAVPLRV VPTLSTTDMK TADKIELGDS DLKIMLKKHH EKRKHQPDHP ENSBTAP00000053560/1-1292 SPSPAVPLRV VPTLSTTDMK TADKIELGDS DLKIMLKKHH EKRKYQPDHP ENSP00000436926/1-1324 SPSPAVPLRV VPTLSTTDMK TADKVELGDS DLKIMLKKHH EKRKHQPDHP bmy_12505T0/1-1328 SPSPAVPLRV VPTLSTTDMK TADKIELGDS DLKIMLKKHH EKRKHQPDHP BACU010167/1-1276 SPSPAVPLRV VPTLSTTDMK TADKIELGDS DLKLMLKKHH EKRKHQPDHP 301 350 ENSTTRP00000008685/1-1320 DLLTGDLTLN DIMTRVNAGR KGSLAALYDL AVLKKKVKEK EERKKKKIKL ENSBTAP00000053560/1-1292 DLLTGDLTLN DIMTRVNAGR KGSLAALYDL AVLKKKVKEK EERKKKKIKL ENSP00000436926/1-1324 DLLTGDLTLN DIMTRVNAGR KGSLAALYDL AVLKKKVKEK EEKKKKKIKT bmy_12505T0/1-1328 DLLTGDLTLN DIMTRVNAGR KGSLAALYDL AVLKKKVKEK EERKKKKIKM BACU010167/1-1276 DLLTGDLTLN DIMTRVNAGR KGSLAALYDL AVLKKKVKEK EERKKKKIKM 351 400 ENSTTRP00000008685/1-1320 IKSEAEDLAE PLSGTEGLPP LSQAPSPLAI PAIKEXXXXX XXXXXXXXXX ENSBTAP00000053560/1-1292 IKSEVEDLAE PLSGPEGLPP LSQAPSPLAI PAIKEEPLED LKPCLGINEI ENSP00000436926/1-1324 IKSEAEDLAE PLSSTEGVAP LSQAPSPLAI PAIKEEPLED LKPCLGINEI bmy_12505T0/1-1328 IKSEAEDLAE PLSGTEGLPP LSQAPSPLAI PAIKED---- ---------- BACU010167/1-1276 IKSEAEDLAE PLSGTEGLPP LSQAPSPLAI PAIKEEPLED LKPCLGINEI 401 450 ENSTTRP00000008685/1-1320 XXXXXXXXXX XXXXXXXXXX XXLEERVLDW QSSPASSLNS WFSAAPNWAE ENSBTAP00000053560/1-1292 SSSFFSLLLE ILLLEGQASL PLLEERVLDW QSSPASSLNS WFSAAPNWAE ENSP00000436926/1-1324 SSSFFSLLLE ILLLESQASL PMLEERVLDW QSSPASSLNS WFSAAPNWAE bmy_12505T0/1-1328 ---FFSLLLE ILLLEGQASL PMLEERVLDW QSSPASSLNS WFSAAPNWAE BACU010167/1-1276 SSSFFSLLLE ILLLEGQASL PMLEERVLDW QSSPASSLNS WFSAAPNWAE 451 500 ENSTTRP00000008685/1-1320 LVLPALQYLA GESR------ ---------- AVPSSFSPFV GFKEKTQQWK ENSBTAP00000053560/1-1292 LVLPALQYLA GESR------ ---------- AVPSSFSPFV EFKEKTQHWK ENSP00000436926/1-1324 LVLPALQYLA GESR------ ---------- AVPSSFSPFV EFKEKTQQWK bmy_12505T0/1-1328 LVLPALQYLA GESRAISLTC VACSWDPFLA AVPSSFSPFV GFKEKTQQWK BACU010167/1-1276 LVLPALQYLA GESR------ ---------- ---------- ---------- 501 550 ENSTTRP00000008685/1-1320 LLGQSQDNEK ELAALFQLWL ETKDQAFCKQ ENEDSSDATT PVPRVRTDYV ENSBTAP00000053560/1-1292 LLGQSQDNEK ELAALFQLWL ETKDQAFCKQ ETEDSSDATT PVPRVRTDYV ENSP00000436926/1-1324 LLGQSQDNEK ELAALFQLWL ETKDQAFCKQ ENEDSSDATT PVPRVRTDYV bmy_12505T0/1-1328 LLGQSQDNEK ELAALFQLWL ETKDQAFCKQ ENEDSSDATT PVPRVRTDYV BACU010167/1-1276 --GQSQDNEK ELAALFQLWL ETKDQAFCKQ ENEDSSDATT PVPRVRTDYV 551 600 ENSTTRP00000008685/1-1320 VRPSTGEEKR VFQEQERYRY SQPHKAFTFR MHGFESVVGP VKGVFDKETS ENSBTAP00000053560/1-1292 VRPSTGEEKR VFQEQERYRY SQPHKAFTFR MHGFESVVGP VKGVFDKETS ENSP00000436926/1-1324 VRPSTGEEKR VFQEQERYRY SQPHKAFTFR MHGFESVVGP VKGVFDKETS bmy_12505T0/1-1328 VRPSTGEEKR VFQEQERYRY SQPHKAFTFR MHGFESVVGP VKGVFDKETS BACU010167/1-1276 VRPSTGEEKR VFQEQERYRY SQPHKAFTFR MHGFESVVGP VKGVFDKETS 601 650 ENSTTRP00000008685/1-1320 LNKAREHSLL RSDRPAYVTI LSLVRDAAAR LPNGEGTRAE ICELLKDSQF ENSBTAP00000053560/1-1292 LNKAREHSLL RSDRPAYVTI LSLVRDAAAR LPNGEGTRAE ICELLKDSQF ENSP00000436926/1-1324 LNKAREHSLL RSDRPAYVTI LSLVRDAAAR LPNGEGTRAE ICELLKDSQF bmy_12505T0/1-1328 LNKAREHSLL RSDRPAYVTI LSLVRDAAAR LPNGEGTRAE ICELLKDSQF BACU010167/1-1276 LNKAREHSLL RSDRPAYVTI LSLVRDAAAR LPNGEGTRAE ICELLKDSQF 651 700 ENSTTRP00000008685/1-1320 LAPDVTSTQV NTVVSGALDR LHYEKDPCVK YDIGRKLWIY LHRDRSEEEF ENSBTAP00000053560/1-1292 LAPDVTSTQV NTVVSGALDR LHYEKDPCVK YDIGRKLWIY LHRDRSEEEF ENSP00000436926/1-1324 LAPDVTSTQV NTVVSGALDR LHYEKDPCVK YDIGRKLWIY LHRDRSEEEF bmy_12505T0/1-1328 LAPDVTSTQV NTVVSGALDR LHYEKDPCVK YDIGRKLWIY LHRDRSEEEF BACU010167/1-1276 LAPDVTSTQV NTVVSGALDR LHYEKDPCVK YDIGRKLWIY LHRDRSEEEF 701 750 ENSTTRP00000008685/1-1320 ERIHQAQAAA AKARKALQQK PKPPSKV--- ---------- ---------- ENSBTAP00000053560/1-1292 ERIHQAQAAA AKARKALQQK PKPPSKV--- ---------- ---------- ENSP00000436926/1-1324 ERIHQAQAAA AKARKALQQK PKPPSKV--- ---------- ---------- bmy_12505T0/1-1328 ERIHQAQAAA AKARKALQQK PKPPSKVVSD LAGWWRRGCG VPAGLAHARV BACU010167/1-1276 ERIHQAQAAA AKARKALQQK PKPPSKV--- ---------- ---------- 751 800 ENSTTRP00000008685/1-1320 --------KS SSKEGSVKVL GAGPSEQSQL SLSDSSMPPT PVTPVTPTTP ENSBTAP00000053560/1-1292 --------KS SSKDGPVKVL SGGPSEQSQL SLSDSSMPPT PVTPVTPTTP ENSP00000436926/1-1324 --------KS SSKESSIKVL SSGPSEQSQM SLSDSSMPPT PVTPVTPTTP bmy_12505T0/1-1328 RAHPVLVQKS SSKEGSVKVL GAGPSEQSQL SLSDSSMPPT PVTPVTPTTP BACU010167/1-1276 --------KS SSKEGSVKVL GAGPSEQSQL SLSDSSMPPT PVTPVTPTTP 801 850 ENSTTRP00000008685/1-1320 ALPATPISPP PVPSVNKSGP TTVSEPVKST SGVLLVSSPT MPQLGTMLSP ENSBTAP00000053560/1-1292 ALPATPISPP PVPPVNKNGP TTVSEPAKST SGVLLVSSPT MPQLGTMLSP ENSP00000436926/1-1324 ALPAIPISPP PVSAVNKSGP STVSEPAKSS SGVLLVSSPT MPHLGTMLSP bmy_12505T0/1-1328 ALPATPISPP PVPSVNKSGP TTVSEPVKST SGVLLVSSPT MPQLGTMLSP BACU010167/1-1276 ALPATPISPP PVPSVNKSGP TTVSEPVKST SGVLLVSSPT IPQLGTMLSP 851 900 ENSTTRP00000008685/1-1320 ASSQTPPSSQ AAARVVSHSG SAGLPQVRVV AQPSLPAA-T QSAGPAPTLP ENSBTAP00000053560/1-1292 ASSQTPPSSQ AAARVVSHSG SAGLPQVRVV APPSLPAV-T QPAGPAPPLP ENSP00000436926/1-1324 ASSQTAPSSQ AAARVVSHSG SAGLSQVRVV AQPSLPAVPQ QSGGPAQTLP bmy_12505T0/1-1328 ASSQTPPSSQ AAARVVSHSG SAGLPQVRVV AQPSLPAV-T QSAGPAPTLP BACU010167/1-1276 ASSQTPPSSQ AAARVVSHSG SAGLPQVRVV AQPSLPAV-T QSAGPAPTLP 901 950 ENSTTRP00000008685/1-1320 QMTAGPQIRV PATAVQAKGG PQTVMATVPV KAQTAAATVQ RPGP--AGLT ENSBTAP00000053560/1-1292 PMPAGTQIRM PATGAQAKGG PQTVMATVPV KAQTATATVQ RPGPGSAGLT ENSP00000436926/1-1324 QMPAGPQIRV PATATQTKVV PQTVMATVPV KAQTTAATVQ RPGPGQTGLT bmy_12505T0/1-1328 QMTAGPQIRV PATAVQTKGG PQTVMATVPV KAQTAAATVQ RPGPGPAGLT BACU010167/1-1276 QLTAGPQIRV PATAVQTKGG PQTVMATVPV KAQTAAATVQ RPGPGPAGLT 951 1000 ENSTTRP00000008685/1-1320 VTSLPATVNP ASKPATSSPG GSAPSTPATA VIQNVTGQNI IKQXXXXXXX ENSBTAP00000053560/1-1292 VTSLPAAAKP TSKPATSSPG GPTPSTPTAA VLQSVAGQNI IKQVAITGQL ENSP00000436926/1-1324 VTSLPATASP VSKPATSSPG TSAPSASTAA VIQNVTGQNI IKQVAITGQL bmy_12505T0/1-1328 VTSLPAAANP ASKPATSSPG GSAPSTPAAA VIQNVTGQNI IKQVAITGQL BACU010167/1-1276 VTSLPAAANP ASKPATSSPG GSAPSTPAAA VIQNVTGQNI IKQVAITGQL 1001 1050 ENSTTRP00000008685/1-1320 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053560/1-1292 GVKPQTGSSV PLTATNFRIQ GKDVLRLPPS SITTDAKGQT VLRITPDMMA ENSP00000436926/1-1324 GVKPQTGNSI PLTATNFRIQ GKDVLRLPPS SITTDAKGQT VLRITPDMMA bmy_12505T0/1-1328 GVKPQTGSSI PLTATNFRIQ GKDVLRLPPS SITTDAKGQT VLRITPDMMA BACU010167/1-1276 GVKPQTGSSI PLTATNFRIQ GKDVLRLPPS SITTDAKGQT VLRITPDMMA 1051 1100 ENSTTRP00000008685/1-1320 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053560/1-1292 TLAKSQVTTV KLTQDLFGTG AGTTGKGISA TLHVTSNPVH ATDSPAKAGV ENSP00000436926/1-1324 TLAKSQVTTV KLTQDLFGTG GNTTGKGISA TLHVTSNPVH AADSPAKASS bmy_12505T0/1-1328 TLAKSQVTTV KLTQDLFGTG SGPSGKGISA TLHVTSNTVH AADSPAKASA BACU010167/1-1276 TLAKSQVTTV KLTQDLFGTG SGPSGKGISA TLHVTSNPVH AADSPAKASA 1101 1150 ENSTTRP00000008685/1-1320 XXXXXXXXXX XTVVKVTPDL KPTEASSSAF RLMPALGVSV ADQKGKNTVA ENSBTAP00000053560/1-1292 ATAPSSTPTG TTVVKVTPDL KPA------- RLMPALGVSV ADQKGKNTVA ENSP00000436926/1-1324 ASAPSSTPTG TTVVKVTPDL KPTEASSSAF RLMPALGVSV ADQKGKSTVA bmy_12505T0/1-1328 ASAPSSTPPG TTVVKVTPDL KPTEASSSAF RLMPALGVSV ADQKGKNTVA BACU010167/1-1276 ASAPSSTPPG TTVVKVTPDL KPTEASSSAF RLMPALGVSV ADQKGKSTVA 1151 1200 ENSTTRP00000008685/1-1320 SSEAKPAATI RIVQGLGVMP PKAGPTITVA AHAKQGSSVA SGSGTVHTSA ENSBTAP00000053560/1-1292 SSEAKPAATI RIVQGLGVMP PTAGQTITVA AHTKQGPSVA GGSGTVHTSA ENSP00000436926/1-1324 SSEAKPAATI RIVQGLGVMP PKAGQTITVA THAKQGASVA SGSGTVHTSA bmy_12505T0/1-1328 SSEAKPAATI RIVQGLGVMP PKAGQTITVA AHAKQGPSVA SGSGTVHTSA BACU010167/1-1276 SSEAKPAATI RIVQGLGVMP PKAGQTITVA AHAKQGPSVA SGSGTVHTSA 1201 1250 ENSTTRP00000008685/1-1320 VSLPSVNAAV SKTVAVASGA SSTPISIGTG APAVRQVPVS TTVVSTSQAG ENSBTAP00000053560/1-1292 VSMPSVNAAV SKTVAVASGA ASAPISIGTG APAVRQVPVS TAVVSTSQAG ENSP00000436926/1-1324 VSLPSMNAAV SKTVAVASGA ASTPISISTG APTVRQVPVS TTVVSTSQAG bmy_12505T0/1-1328 VSLPSVNAAV SKTVAVASGA ASTPISIGTG APAMRQVPVS TTVVSTSQAG BACU010167/1-1276 VSLPSVNAAV SKTVAVASGA ASTPISIGTG APAVRQVPVS TTVVSTSQAG 1251 1300 ENSTTRP00000008685/1-1320 KLPTRITVPL SVISQPMKGK GVVTAPIIKG NLGANLGGLG RNIILTTMPA ENSBTAP00000053560/1-1292 KLPTRITVPL SVISQPMKGK SVVTAPIIKG NLGANLGGLG RNIILTTMPA ENSP00000436926/1-1324 KLPTRITVPL SVISQPMKGK SVVTAPIIKG NLGANLSGLG RNIILTTMPA bmy_12505T0/1-1328 KLPTRITVPL SVISQPMKGK GVVTAPIIKG NLGANLGGLG RNIILTTMPA BACU010167/1-1276 KLPTRITVPL SVISQPMKGK GVVTAPIIKG NLGANLGGLG RNIILTTMPA 1301 1350 ENSTTRP00000008685/1-1320 GTKLIAGNKP VSFLTAQQLQ QLQQQGQATQ VRIQTVPASH LQQGTASGSS ENSBTAP00000053560/1-1292 GAKLIAGNKP VSFLTAQQLQ QLQQQGQATQ VRIQTVPASH LQQGTASGSS ENSP00000436926/1-1324 GTKLIAGNKP VSFLTAQQLQ QLQQQGQATQ VRIQTVPASH LQQGTASGSS bmy_12505T0/1-1328 GTKLIAGNKP VSFLTAQQLQ QLQQQGQATQ VRIQTVPASH LQQGTASGSS BACU010167/1-1276 GTKLIAGNKP VSFLTAQQLQ QLQQQGQATQ VRIQTVPASH VQQGTASGSS 1351 1400 ENSTTRP00000008685/1-1320 KAVSTVVVTT APSPKQAPEQ Q ENSBTAP00000053560/1-1292 KAVSTVVVTT APSPKQAPEQ Q ENSP00000436926/1-1324 KAVSTVVVTT APSPKQAPEQ Q bmy_12505T0/1-1328 KAVSTVVVTT APSPKQAPEQ Q BACU010167/1-1276 KAVSTVVVTT APSPKQAPEQ Q