KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:25 2014 Check: 00 .. Name: bmy_10677T0/1-473 Len: 999 Check: 4335 Weight: 1.00 Name: ENSTTRP00000003054/1-764 Len: 999 Check: 2282 Weight: 1.00 Name: ENSP00000274498/1-814 Len: 999 Check: 6477 Weight: 1.00 Name: BACU015986/1-340 Len: 999 Check: 7257 Weight: 1.00 Name: ENSBTAP00000053583/1-766 Len: 999 Check: 1152 Weight: 1.00 // 1 50 bmy_10677T0/1-473 --MDRLGKDT VAVKDDAWVS DSDLCGRMND GALCPMRD-I GRGPWLALWG ENSTTRP00000003054/1-764 ---------- ---------- ---------- ---------- ---------- ENSP00000274498/1-814 MGLPALEFSD CCLDSPHFRE TLKSHEAELD KTNKFIKELI KDGKSLISAL BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 ---------- ---------- ---------- ---------- ---------L 51 100 bmy_10677T0/1-473 ADLSSAKRKF ADSLNEFKFQ CIGDAETDDE MCIGR-MSCF GLMTRFRFGM ENSTTRP00000003054/1-764 --LSSAKRKF ADSLNEFKFQ CIGDAETDDE MCIARSLQEF ATVLRNLEDE ENSP00000274498/1-814 KNLSSAKRKF ADSLNEFKFQ CIGDAETDDE MCIARSLQEF ATVLRNLEDE BACU015986/1-340 --LSSAKRKF ADSLNEFKFQ CIGDAETDDE MCIARSLQEF ATVLRNLEDE ENSBTAP00000053583/1-766 LDLSSAKRKF ADSLNEFKFQ CIGDAETDDE MCIARSLQEF ATVLRNLEDE 101 150 bmy_10677T0/1-473 LLVQIENASE VLITPLEKFR KEQIGAAKGR RSGKHNTFFR KSKPTIFRES ENSTTRP00000003054/1-764 RIRMIENASE VLITPLEKFR KEQIGAAK-- ---------- ---------- ENSP00000274498/1-814 RIRMIENASE VLITPLEKFR KEQIGAAK-- ---------- ---------- BACU015986/1-340 RIRMIENASE VLITPLEKFR KEQIGAAK-- ---------- ---------- ENSBTAP00000053583/1-766 RIRMIENASE VLITPLEKFR KEQIGAAK-- ---------- ---------- 151 200 bmy_10677T0/1-473 RANKLRAQLI CSSQVSEVRL RGQPQSCHSS VLTSNRVVLV HKSSKAESFG ENSTTRP00000003054/1-764 ---------- ---------- ---------- ---------- ---------- ENSP00000274498/1-814 ---------- ---------- ---------- ---------- ---------- BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_10677T0/1-473 RSPLRHLPGV LGNITLLLVE KHFPTNFTVF IYEDIGPKFR FVEMDTYQLK ENSTTRP00000003054/1-764 ---------- ---------- ---------- ---------- ---------- ENSP00000274498/1-814 ---------- ---------- ---------- ---------- ---------- BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_10677T0/1-473 WVYDDSAHSV RLKSLAVDQI NGVLTSRVLF RASGDGFLEA KKKYDKETEK ENSTTRP00000003054/1-764 ---------- ---------- ---------- --------EA KKKYDKETEK ENSP00000274498/1-814 ---------- ---------- ---------- --------EA KKKYDKETEK BACU015986/1-340 ---------- ---------- ---------- --------EA KKKYDKETEK ENSBTAP00000053583/1-766 ---------- ---------- ---------- --------EA KKKYDKETEK 301 350 bmy_10677T0/1-473 YCGILEKHLN LSSKKKESQL QE-------- --YFIISCIL CLGRKKPTQE ENSTTRP00000003054/1-764 YCGILEKHLN LSSKKKESQL QEADSQVDLV RQHFYEVSLE YVFKVQEVQE ENSP00000274498/1-814 YCGILEKHLN LSSKKKESQL QEADSQVDLV RQHFYEVSLE YVFKVQEVQE BACU015986/1-340 YCGILEKHLN LSSKKKESQL QEADSQVDLV RQHFYEVSLE YVFKVQEVQE ENSBTAP00000053583/1-766 YCGILEKHLN LSSKKKESQL QEADSQVDLV RQHFYEVSLE YVFKVQEVQE 351 400 bmy_10677T0/1-473 EEILEVAKLL GHVDLLLLAF LQGLFTFYHH GYELAKDFND FKTQLTISIQ ENSTTRP00000003054/1-764 RKMFEFVE-- -----PLLAF LQGLFTFYHH GYELAKDFND FKTQLTISIQ ENSP00000274498/1-814 RKMFEFVE-- -----PLLAF LQGLFTFYHH GYELAKDFGD FKTQLTISIQ BACU015986/1-340 RKMFEFVE-- -----PLLAF LQGLFTFYHH GYELAKDFND FKTQLTISIQ ENSBTAP00000053583/1-766 RKMFEFVE-- -----PLLAF LQGLFTFYHH GYELAKDFND FKTQLTISIQ 401 450 bmy_10677T0/1-473 NTRNRFEGTR SEVESLMKKM KENPLEHKTI SPYTMEGYLY VQEKR----- ENSTTRP00000003054/1-764 NTRNRFEGTR SEVESLMKKM KENPLEHKTI SPYTMEGYLY VQEKR----- ENSP00000274498/1-814 NTRNRFEGTR SEVESLMKKM KENPLEHKTI SPYTMEGYLY VQEKR----- BACU015986/1-340 NTRNRFEGTR SEVESLMKKM KENPLEHKTI SPYTMEGYLY VQEKPCSGRV ENSBTAP00000053583/1-766 NTRNRFEGTR SEVESLMKKM KENPLEHKTI SPYTMEGYLY VQEKR----- 451 500 bmy_10677T0/1-473 ---------- -HFGTSWVKH YCTYQRDSKQ ITMVPFDQKS GGKGFQEA-- ENSTTRP00000003054/1-764 ---------- -HFGTSWVKH YCTYQRDSKQ ITMVPFDQKS GGKGGEDESV ENSP00000274498/1-814 ---------- -HFGTSWVKH YCTYQRDSKQ ITMVPFDQKS GGKGGEDESV BACU015986/1-340 EMFYGEYYLA GHFGTSWVKH YCTYQRDSKQ ITMVPFDQKS GGKGGEDESV ENSBTAP00000053583/1-766 ---------- -HFGTSWVKH YCTYQRDSKQ ITMVPFDQKS GGKGGEDESV 501 550 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 TLKSCTRRKT DSIEKRFCFD VEAVDRPXXX XXXXXXXXXX XXXXXXXXXX ENSP00000274498/1-814 ILKSCTRRKT DSIEKRFCFD VEAVDRP-GV ITMQALSEED RRLWMEAMDG BACU015986/1-340 TLKSCTRRKT DSIEKRFCFD VEAVDRP-GV ITMQALSEED RRLWMEAMDG ENSBTAP00000053583/1-766 TLKSCTRRKT DSIEKRFCFD VEAVDRP-GV ITMQALSEED RRLWMEAMDG 551 600 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 XXXVYNSNKD SQSEGTAQLD SIGFSIIRKC IHAVETRGIN EQGLYRIVGV ENSP00000274498/1-814 REPVYNSNKD SQSEGTAQLD SIGFSIIRKC IHAVETRGIN EQGLYRIVGV BACU015986/1-340 REPVSNN--- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 REPVYNSNKD SQSEGTAQLD SIGFSIIKKC IHAVETRGIN EQGLYRIVGV 601 650 bmy_10677T0/1-473 ---------- ---------- -------WHL KK-------- ---------- ENSTTRP00000003054/1-764 NSRVQKLLSI LMDPKTASET ETDICAEWEI KTITSALKTY LRMLPGPLMM ENSP00000274498/1-814 NSRVQKLLSV LMDPKTASET ETDICAEWEI KTITSALKTY LRMLPGPLMM BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 NSRVQKLLSV LMDPKTASET EMDICAEWEI KTITSALKTY LRMLPGPLMM 651 700 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 YQFQRSFIKA AKLENQESRV SEIHSLVHRL PEKNRQMLQL LMNHLAXXXX ENSP00000274498/1-814 YQFQRSFIKA AKLENQESRV SEIHSLVHRL PEKNRQMLQL LMNHLANVAN BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 YQFQRSFIKA AKLENQESRV SEIHSLVHRL PEKNRQMLQL LMNHLANVAN 701 750 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000274498/1-814 NHKQNLMTVA NLGVVFGPTL LRPQEETVAA IMDIKFQNIV IEILIENHEK BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 NHKQNLMTVA NLGVVFGPTL LRPQEETVAA IMDIKFQNIV IEILIENHEK 751 800 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 IFNTVPDAPL TNAQLHLSRK KSSDSKPPSC SERPLTLFHT MQSTEKQEQR ENSP00000274498/1-814 IFNTVPDMPL TNAQLHLSRK KSSDSKPPSC SERPLTLFHT VQSTEKQEQR BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 IFNTVPDAPL TNAQLHLSRK KSSDSKPPSC SERPLTLFHT VQSTEKQEQR 801 850 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 NSLIDSSLES VVSSNANSIL NSSSSLQPNM NSSDPDLDVL KPTRPNSLPP ENSP00000274498/1-814 NSIINSSLES -VSSNPNSIL NSSSSLQPNM NSSDPDLAVV KPTRPNSLPP BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 NSLINSSLES VVSSNANSIL NSSSSLQPNM NSSDPDLDVL KPTRPNSLPP 851 900 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 NPSPTSPLSP SWPMFSAPSS PMPTSSTSSD SSPIRSVAGF VCFSVAAVVL ENSP00000274498/1-814 NPSPTSPLSP SWPMFSAPSS PMPTSSTSSD SSPVRSVAGF VWFSVAAVVL BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 NPSPTSPLSP SWPMFSAPSS PMPTSSTSSD SSPIRSVAGF VCFFVAAVVL 901 950 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003054/1-764 SLAWSSLHAV FSLLVNFVPC HPNLHLLFDR PEEAVREDSS TPFRKAKALY ENSP00000274498/1-814 SLARSSLHAV FSLLVNFVPC HPNLHLLFDR PEEAVHEDSS TPFRKAKALY BACU015986/1-340 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053583/1-766 SSAWSSLHAV FSLLVNFVPC HPNLHLLFDR PEEAVREDSS TPFRKAKALY 951 1000 bmy_10677T0/1-473 ---------- ---------- ---------- ---------- --------- ENSTTRP00000003054/1-764 ACKAEHDSEL SFTAGTVFDN VHPSQEPGWL EGTLNGKTGL IPENYVEFL ENSP00000274498/1-814 ACKAEHDSEL SFTAGTVFDN VHPSQEPGWL EGTLNGKTGL IPENYVEFL BACU015986/1-340 ---------- ---------- ---------- ----SGK--- --------- ENSBTAP00000053583/1-766 ACKAEHDSEL SFTAGTVFDN VHPSQEPGWL EGTLNGKTGL IPENYVEFL