KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:07:26 2014 Check: 00 .. Name: ENSP00000475261/1-340 Len: 346 Check: 5432 Weight: 1.00 Name: ENSTTRP00000000900/1-322 Len: 346 Check: 5131 Weight: 1.00 Name: ENSBTAP00000053589/1-263 Len: 346 Check: 5547 Weight: 1.00 Name: bmy_11807T0/1-275 Len: 346 Check: 4083 Weight: 1.00 // 1 50 ENSP00000475261/1-340 MALKEGLRAW KRIFWRQILL TLGLLGLFLY GLPKFRHLEA LIPMGVCPSA ENSTTRP00000000900/1-322 ----MGLRAW KRIF---ILS ALGLLGLLLH GLPVVRHLGV LTPMGICPLA ENSBTAP00000053589/1-263 ---------- ---------- ---------- ---------- ---------- bmy_11807T0/1-275 ---------- ---------- ---------- -------VDE WTCLSIPALA 51 100 ENSP00000475261/1-340 TMSQLRDNFT GALRPWARPE VLTCTPWGAP IIWDGSFDPD VAKQEARQQN ENSTTRP00000000900/1-322 RMPLLRDNFT GPLHPWARPE VLTCTCWGAP IIWDGTFDPD VAQQEAVQ-N ENSBTAP00000053589/1-263 ---------- -------RPE VLTCTSWGAP IIWDGTFDPD VAQKEAVQWN bmy_11807T0/1-275 R--------- ------AQPE VLTCTCWRAP IIWDGTFDPD VAQQEAVQQN 101 150 ENSP00000475261/1-340 LTIGLTIFAV GRYLEKYLER FLETAEQHFM AGQSVMYYVF TELPGAVPRV ENSTTRP00000000900/1-322 LTIGLTVFAV GRYLEKYLAH FLKTAEQHFM VGQRVVYYVF TEGPAAVPRV ENSBTAP00000053589/1-263 LTVGLTVFAV GRYLEKYLER FLETAEQHIM VGQRVVYYVF TERPAAVRRV bmy_11807T0/1-275 LTIGLTVFAV GRYLEKYLAR FLETAEQHFM VGQRVVYYVF TEGPVAVPRV 151 200 ENSP00000475261/1-340 ALGP------ GRRLPVERVA RERRWQDVSM ARMRTLHAAL GGLPGREAHF ENSTTRP00000000900/1-322 RLGP------ GRRLR----- ----WQNVSM LRMRALHAAL GGRLGPEARC ENSBTAP00000053589/1-263 PLGP------ GRRLRVERVG RERRWHDVSM ARMRALHAAL GGRLGREARF bmy_11807T0/1-275 RLGPGRRLPS GRRLRVDRVA RERPWQDVSM ARMRALHAAV GGRLGLKARF 201 250 ENSP00000475261/1-340 MFCMDVDQHF SGTFGPEALA ESVAQLHSWH YHWPSWLLPF ERDAHSAAAM ENSTTRP00000000900/1-322 LRCADVDQHF SGTFGSEALA ESVAQLLV-H YRWRRRLLPF ERDARSAAAL ENSBTAP00000053589/1-263 VLCMDVD--- -GTFGPEALA ESVAQLHAWH YRWPRRLLPF ERDARSAAAL bmy_11807T0/1-275 VLLMDVDQHF SGTFGPEALA GSVAQLHAWH YRWRRLLLPF ERDARSAAAL 251 300 ENSP00000475261/1-340 AWGQGDFYNH AAVFGGSVAA LRGLTAHCAG GLDWDRARGL EARWHDESHL ENSTTRP00000000900/1-322 GPSEGDFCYH AAVFGGSVAA LRQLTAYCVR GLRRDRARGL EARWHDESHL ENSBTAP00000053589/1-263 GPGEGDFYYH AAVFGGSVAA LRRLTAHCAR ALRRDRAR-L EARWHDESHL bmy_11807T0/1-275 GPGEGDFYYH AAVFGGSVAA LRQLTAYCVR G--------L EVRWHDESHL 301 350 ENSP00000475261/1-340 NKFFWLHKPA KVLSPEFCWS PDIGPRAEIR RPRLLWAPKG YRLLRN ENSTTRP00000000900/1-322 NKSFWLHKPA KLLSPEFCWS SDVGHRAEIR RPQLLWAPKE YALLRG ENSBTAP00000053589/1-263 NKFFWLHKPA KLLSPEFCWS PDIGRRAEIR RPRLLWAPKE Y----- bmy_11807T0/1-275 NKFFWLHKPA KLLSPEFCWS PDISRRAEIR RPQLI----- ------