KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:35 2014 Check: 00 .. Name: ENSP00000261842/1-1137 Len: 1150 Check: 579 Weight: 1.00 Name: ENSBTAP00000053599/1-1138 Len: 1150 Check: 5056 Weight: 1.00 Name: BACU003205/1-1092 Len: 1150 Check: 1264 Weight: 1.00 Name: bmy_13045T0/1-667 Len: 1150 Check: 7101 Weight: 1.00 Name: ENSTTRP00000015941/1-1138 Len: 1150 Check: 4215 Weight: 1.00 // 1 50 ENSP00000261842/1-1137 MSDIVEKTLT ALPGLFLQNQ PGGGPAAAKA SFSSRLGSLV RGITALTSKH ENSBTAP00000053599/1-1138 MSDIVEKTLT ALPGLFLQNQ SVGGPAAAKA SFSSRLGGLV RGITALTSKH BACU003205/1-1092 MSDIVEKTLT ALPGLFLQNQ SATGPAAAKA SFSSRLGGLV RGITALTSKH bmy_13045T0/1-667 MSDIVEKTLT ALPGLFLQNQ SASGPAAAKA SFSSRLGGLV RGITALTSKH ENSTTRP00000015941/1-1138 MSDIVEKTLT ALPGLFLQNQ SASGPAAAKA SFSSRLGGLV RGITALTSKH 51 100 ENSP00000261842/1-1137 EEEKLIQQEL SSLKATVSAP TTTLKMMKEC MVRLIYCEML GYDASFGYIH ENSBTAP00000053599/1-1138 EEEKLIQQEL NNLKATVSAP TTTLKMMKEC MVRLIYCEML GYDASFGYIH BACU003205/1-1092 EEEKLIQQEL NNLKATVSAP NTTLKMMKEC MVRLIYCEML GYDASFGYIH bmy_13045T0/1-667 EEEKLIQQEL NNLKATVSAP NTTLKMMKEC MVRLIYCEML GYDASFGYIH ENSTTRP00000015941/1-1138 EEEKLIQQEL SNLKATVSAP TTTLKMMKEC MVRLIYCEML GYDASFGYIH 101 150 ENSP00000261842/1-1137 AIKLAQQGNL LEKRVGYLAV SLFLHESHEL LLLLVNTVVK DLQSTNLVEV ENSBTAP00000053599/1-1138 AIKLAQQGNL LEKRVGYLAV SLFLHESHEL LLLLVNTVVK DLQSTNLVEV BACU003205/1-1092 AIKLAQQGNL LEKR------ ---------- ---------- DLQSTNLVEV bmy_13045T0/1-667 AIKLAQQGNL LEKRVGYLAV SLFLHESHEL LLLLVNTVVK DLQSTNLVEV ENSTTRP00000015941/1-1138 AIKLAQQGNL LEKRVGYLAV SLFLHESHEL LLLLVNTVVK DLQSTNLVEV 151 200 ENSP00000261842/1-1137 CMALTVVSQI FPCEMIPAVL PLIEDKLQHS KEIVRRKAVL ALYKFHLIAP ENSBTAP00000053599/1-1138 CMALTIVSQI FPREMIPAVL PLIEDKLQHS KEIIRRKAVL ALYKFYLIAP BACU003205/1-1092 CMALTIVSQI FPREMIPAVL PLIEDKLQHS KEIIRRKAVL ALYKFYLIAP bmy_13045T0/1-667 CMALTIVSQI FPREMIPAVL PLIEDKLQHS KEIIRRKAVL ALYKFYLIAP ENSTTRP00000015941/1-1138 CMALTIVSQI FPREMIPAVL PLIEDKLQHS KEIIRRKAVL ALYKFYLIAP 201 250 ENSP00000261842/1-1137 NQVQHIHIKF RKALCDRDVG VMAASLHIYL RMIKENSSGY KDLTGSFVTI ENSBTAP00000053599/1-1138 NQVQHIHVKF RKALCDRDVG VMAASLHIYL RMIKENSSAY KDLTGSFVTI BACU003205/1-1092 NQVQHIHIKF RKALCDRDVG VMAASLHIYL KMIKENSSAY KDLTGSFVTI bmy_13045T0/1-667 NQVQHIHIKF RKALCDRDVG VMAASLHIYL RMIKENSSAY KDLTGSFVTI ENSTTRP00000015941/1-1138 NQVQHIHIKF RKALCDRDVG VMAASLHIYL RMIKENSSAY KDLTGSFVTI 251 300 ENSP00000261842/1-1137 LKQVVGGKLP VEFNYHSVPA PWLQIQLLRI LGLLGKDDQR TSELMYDVLD ENSBTAP00000053599/1-1138 LKQVVGGKLP VDFNYHSVPA PWLQIQLLRI LGLLGKDDQR TSELMYDVLD BACU003205/1-1092 LKQVVGGKLP ADFNYHSVPA PWLQIQLLRI LGLLGKDDQR TSELMYDVLD bmy_13045T0/1-667 LKQVVGGKLP VDFSYHSVPA PWLQIQLLRI LGLLGKDDQR TSELMYDVLD ENSTTRP00000015941/1-1138 LKQVVGGKLP VDFNYHSVPA PWLQIQLLRI LGLLGKDDQR TSELMYDVLD 301 350 ENSP00000261842/1-1137 ESLRRAELNH NVTYAILFEC VHTVYSIYPK SELLEKAAKC IGKFVLSPKI ENSBTAP00000053599/1-1138 ESLRTAELNH NVTYAILFEC VHTVYSIYPK SELLEKAAKC IGKFVLSPKI BACU003205/1-1092 ESLRRAELNH NVTYAILFEC VHTVYSIYPK SELLEKAAKC IGKFVLSPKI bmy_13045T0/1-667 ESLRRAELNH NVTYAILFEC VHTVYSIYPK SELLEKAAKC IGRFVLSPKI ENSTTRP00000015941/1-1138 ESLRRAELNH NVTYAILFEC VHTVYSIYPK SELLEKAAKC IGKFVLSPKI 351 400 ENSP00000261842/1-1137 NLKYLGLKAL TYVIQQDPTL ALQHQMTIIE CLDHPDPIIK RETLELLYRI ENSBTAP00000053599/1-1138 NLKYLGLKAL TYVIQQDPTQ ALQHQMTIIE CLDHPDPIIK RETLELLYRI BACU003205/1-1092 NLKYLGLKAL TYVIQQDPTL ALQHQMTIIE CLDHPDPIIK RETLELLYRI bmy_13045T0/1-667 NLKYLGLKAL TYVIQQDPTL ALQHQMTIIE CLDHPDPIIK RETLELLYRI ENSTTRP00000015941/1-1138 NLKYLGLKAL TYVIQQDPTL ALQHQMTIIE CLDHPDPIIK RETLELLYRI 401 450 ENSP00000261842/1-1137 TNAQNITVIV QKMLEYLHQS KEEYVIVNLV GKIAELAEK- ---------- ENSBTAP00000053599/1-1138 TNAQNITVIV QKMLEYLHQS KEEYIIVNLV GKIAELAEK- ---------- BACU003205/1-1092 TNAQNITVIV QKMLEYLHQS KEEYIIVNL- ---------- ---------- bmy_13045T0/1-667 TNAQNITVIV QKMLEYLHQS KEEYIIVNLV GKIAELAEKY PFVLVLNTVD ENSTTRP00000015941/1-1138 TNAQNITVIV QKMLEYLHQS KEEYIIVNLV GKIAELAEK- ---------- 451 500 ENSP00000261842/1-1137 -YAPDNAWFI QTMNAVFSVG GDVMHPDIPN NFLRLLAEGF DDETEDQQLR ENSBTAP00000053599/1-1138 -YAPDNAWFI QTMNAVFSVG GDVMHPDIPN NFLRLLAEGF DDETENQQLR BACU003205/1-1092 ---------- -TMNAVFSVG GDVMHPDIPN NFLRLLAEGF DDETENQQLR bmy_13045T0/1-667 TYAPDNAWFI QTMNAVFSVG GDVMHPDIPN NFLRLLAEGF DDETENQQLR ENSTTRP00000015941/1-1138 -YAPDNAWFI QTMNAVFSVG GDVMHPDIPN NFLRLLAEGF DDETENQQLR 501 550 ENSP00000261842/1-1137 LYAVQSYLTL LDMENVFYPQ RFLQVMSWVL GEYSYLLDKE TPEEVIAKLY ENSBTAP00000053599/1-1138 LYAVQSYLTL LDVENVFYPQ RFLQVMSWVL GEYSYLLNKE TPEEVITKLY BACU003205/1-1092 LYAVQSYFTL LDVENVFYPQ RFLQVMSWVL GEYSYLLGKE TGEEVITKLY bmy_13045T0/1-667 LYAVQSYFTL LDVENVFYPQ RFLQVMSWVL GEYSYLLGKE TPEEVITKLY ENSTTRP00000015941/1-1138 LYAVQSYFTL LDVENVFYPQ RFLQVMSWVL GEYSYLLDKE TPEEVITKLY 551 600 ENSP00000261842/1-1137 KLLMNDSVSS ETKAWLIAAV TKLTSQAHSS NTVERLIHEF TISLDTCMRQ ENSBTAP00000053599/1-1138 KLLMNDSISS ETKAWIIAAV TKLTPQAHSS NIVERLIQEF TTSLDTCLRQ BACU003205/1-1092 KLLTSDSISS ETKAWIIAAV TKLTPQAHSS NIVERLIQEF TTSLDTCLRQ bmy_13045T0/1-667 KLLTSDSISS ETKAWIIAAV TKLTPQAHSS NIVERLIQEF TTSLDTCLRQ ENSTTRP00000015941/1-1138 KLLRSDSISS ETKAWIIAAV TKLTPQAHSS NIVERLIQEF TTSLDTCLRQ 601 650 ENSP00000261842/1-1137 HAFELKHLHE NVELMKSLLP VDRSCEDLVV DASLSFLDGF VAEGLSQGAA ENSBTAP00000053599/1-1138 HAFELKHLHE NIKLMKSLLP LDKSCEDMVV DASLSFLDGF VAEELTQGAA BACU003205/1-1092 HAFELKHLHE NVKFMKGLLP VDESCEDMVV DASLSFLDGF VAEELSQGAA bmy_13045T0/1-667 HAFELKHLHE NVKFMKGLLP VDKSCEDMVV DASLSFLDGF VAEELSQGAA ENSTTRP00000015941/1-1138 HAFELKHLHE NVKFMKGLLP VDKSCEDMVV DASLSFLDGF VAEELSQGAA 651 700 ENSP00000261842/1-1137 PYKPPHQRQE EKLSQEKVLN FEPYGLSFSS SGFTGRQSPA GISLGSDVSG ENSBTAP00000053599/1-1138 PYKPHHQRQE EKLSQEKVLN FEPYGLSFSS SGFTGRQSPA GISLGSDISG BACU003205/1-1092 PYKPHHQRQE EKLSQEKVLS FEPYGLSFSS SGFSGRQSPA GISLGSDISG bmy_13045T0/1-667 PYKPHHQRQE EKLSQEK--- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 PYKPHHQRQE EKLSQEKVLS FEPYGLSFSS SGFSGRQSPA GISLGSDISG 701 750 ENSP00000261842/1-1137 NSAETGLKET NSLKLEGIKK LWGKEGYLPK KESKTGDESG ALPVPQESI- ENSBTAP00000053599/1-1138 NSTETGLKET NGLKLEGIKK LWGKEGYLPK KESKTGDETE ALPVPQESIM BACU003205/1-1092 NSTDTGLKET NSLKLEGIKK LWGKEGYLPK KESKTGDETE ALPVPQENII bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 NSTETGLKET NSLKLEGIKK LWGKEGYLPK KESKTGDETE ALPVPQENII 751 800 ENSP00000261842/1-1137 MENVDQAITK KDQSQVLTQS KEEKEKQLLA SSLFVGLGSE STINLLGKAD ENSBTAP00000053599/1-1138 MENGDQTVTK KDPSQVLTQS KEEKEKQLLA SSLFVGLGSE STINLLGKAD BACU003205/1-1092 MENVDQIITK KDQSQVLTQS KEEKEKQLLA SSLFVGLGSE STINLLGKAD bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 MENVDQIITK NDQSQALTQS KEEKEKQLLA SSLFVGLGSE STINLLGKAD 801 850 ENSP00000261842/1-1137 TVSHKFRRKS KVKEAKSGET TSTHNMTCSS FSSLSNVAYE DDYYSNTLHD ENSBTAP00000053599/1-1138 TISHKFRRKS KIKETKSEET TTDQNIIRSS FSSSSNVTYE EDYCLDNLQD BACU003205/1-1092 TLSHKFRRKS KVKETKSGQT TTAQNMTRSS FSSSSNVTYE EDYYLDNLQD bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 TLSHKFRRKS KVKETKNGQT TTAQNMTCSS FSSSSNVAYE EDYYLDHLQD 851 900 ENSP00000261842/1-1137 TGDKELKKFS LTSELLDSES LTELPLVEKF SYCSLSTPSL FANNNMEIFH ENSBTAP00000053599/1-1138 RGDKELKKFS LSSELLDSES LTELPLVEKI SNCRLSTPSL FADNNMEVFH BACU003205/1-1092 RGDKEVKKFS LNSELLDSES LTELPLVEKI SNCRLSTPSL FADNNMEVFH bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 RGDKEVKKFS LNSELLDSES LTELPLVEKI SNCRLSTPSL FADNNMEVFH 901 950 ENSP00000261842/1-1137 PPQSTAASVA KESSLASSFL EETTEYIHSN AMEVCNNETI SVSSYKIWKD ENSBTAP00000053599/1-1138 PPQATPASVA NEISLASSLL EETTEHIHSD LMEVCNNEAI SVSSYKIWKD BACU003205/1-1092 PPQSTAASLA NEISLASSLL EETTEHMHSD LMEVCNNETI SVSSYKIWKD bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 PPQSTAASVA NEVSLAVSLL EETTEHMHSD LIEVCNNETI SVSSYKIWKD 951 1000 ENSP00000261842/1-1137 DCLLMVWSVT NKSGLELKSA DLEIFPAENF KVTEQPGCCL PVMEAESTKS ENSBTAP00000053599/1-1138 DCLLVVWSVF NKSGLELKSA NLEMAPAENF KITEQPGCCL PVIEAESTKI BACU003205/1-1092 ECLLMVWSVF NKSASELKSA NLEIAPAENF KITEQPGCCL PVIEAESTKN bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 ECLLMVWSVF NKSASELKSA NLEIAPAENF KITEQPGCCL PVIEAESTKN 1001 1050 ENSP00000261842/1-1137 FQYSVQIEKP FTEGNLTGFI SYHMMDTHSA QLEFSVNLSL LDFIRPLKIS ENSBTAP00000053599/1-1138 FQYSVQMEKP FTEGNLSGFI TYQVMDTHSV QLEFSVNLSL LDFIRPLKIS BACU003205/1-1092 FQYSVQMEKP FTEGNLSGFI NYQVMDTHSV QLEFSVNLSL LDFIRPLKIS bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 FQYSVQMEKP FTEGNLSGFI NYQVMDTHSV QLEFSVNLSL LDFIRPLKIS 1051 1100 ENSP00000261842/1-1137 SDDFGKLWLS FANDVKQNVK MSESQAALPS ALKTLQQKLR LHIIEIIGNE ENSBTAP00000053599/1-1138 TEDFGKLWLS FANDVKQNVK MSESQAALRS TLKALQRELR LHVVDIIGNE BACU003205/1-1092 TEDFGKLWLS FANDVKQNVK MSESQAALPS TLKALQQELR LHVVDIIGNE bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 TEDFGKLWLS FANDVKQNVK MSESQAALPS TLKALQQELR LHVVDIIGNE 1101 1150 ENSP00000261842/1-1137 GLLACQLLPS IPCLLHCRVH ADVLALWFRS SCSTLPDYLL YQCQKVMEGS ENSBTAP00000053599/1-1138 GLLACQLLPS VPCLLHFRVH GDTLALWFRS SCSTLPDYLL YQCQKVMEGS BACU003205/1-1092 GLLACQLLPS IPCLLHFRVH GDMLALWFRS SCSTLPDYLL YQCQKVMEGS bmy_13045T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015941/1-1138 GLLACQLLPS IPCLLHFRVH GDMLALWFRS SCSTLPDYLL YQCQKVMEGS