KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:07:37 2014 Check: 00 .. Name: ENSP00000306627/1-1177 Len: 1219 Check: 7832 Weight: 1.00 Name: ENSTTRP00000007759/1-1164 Len: 1219 Check: 700 Weight: 1.00 Name: bmy_09353T0/1-734 Len: 1219 Check: 8990 Weight: 1.00 Name: ENSBTAP00000053611/1-1137 Len: 1219 Check: 3815 Weight: 1.00 // 1 50 ENSP00000306627/1-1177 ---------- ------MAGI ----FKEFFF STEDLPEVIL TLSLISSIGA ENSTTRP00000007759/1-1164 ---------- ------MAGY -----FDNIH NSQDLPDIIL ILSLICTIGA bmy_09353T0/1-734 ---------- ------MAAW ---------- ---------- ---------- ENSBTAP00000053611/1-1137 RMDGQISNLT FHRKEFTDEW LEVFRHSFLE TSQELPKIIL ILSLICMIGA 51 100 ENSP00000306627/1-1177 FLNRHLEDFP IPVPVILFLL GCSFEVLSFT SSQVQRYANA IQWMSPDLFF ENSTTRP00000007759/1-1164 FLNLHLKDFP IPLPVILFLF GCSFEMFSFT SDQVQNYADA VQWMDPHLFF bmy_09353T0/1-734 ---------- ---------- ---------- ---------N INW------- ENSBTAP00000053611/1-1137 LLNQHLKDFP IPLPVILFLL GCSFEMLSFT SDKVQEYADA IQWMDSHLFF 101 150 ENSP00000306627/1-1177 RIFTPVVFFT TAFDMDTYML QKLFWQILLI SIPGFLVNYI LVLWHLASVN ENSTTRP00000007759/1-1164 DIFTPIILFN VAFDMDVYLL HKLFWQILLI TIPGFLINYT LILWYLASVN bmy_09353T0/1-734 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053611/1-1137 NLFTPVIIFS VAFDMDVYLL HKLFWQIVFI TVPGFLINYT LILWYLASVN 151 200 ENSP00000306627/1-1177 QLLLKPTQWL LFSAILVSSD PMLTAAAIRD LGLSRSLISL INGESLMTSV ENSTTRP00000007759/1-1164 KLVLKTTTWL LFSAILVSSD PMLTSSSIKD LGLSRGLVNL INGESLMTSI bmy_09353T0/1-734 ---------- ---------N PSLAQE---- ---------- ---------- ENSBTAP00000053611/1-1137 KLLLKTTPWL LFSAILVSLD PMLTSSAIKD LGLSRSLVSL INGESLMTSV 201 250 ENSP00000306627/1-1177 ISLITFTSIM DFDQRLQSKR NHTLAEEIVG GICSYIIASF LFGILSSKLI ENSTTRP00000007759/1-1164 VSLIVFTSIM DINFGLQKKV NYSLAHSIMD XXXXXXXXXX XXXXXXXXXX bmy_09353T0/1-734 ---------- ---------- ----AYSIMD KIWSYCIASL LFGILTSKLV ENSBTAP00000053611/1-1137 MSLITFTVIV NIDLSLHKNT IQSLAYIIMR EIWLHLIVSF SFGIVSSKLI 251 300 ENSP00000306627/1-1177 QFWMSTVFGD DVNHISLIFS ILYLIFYICE LVG----MSG IFTLAIVGLL ENSTTRP00000007759/1-1164 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK LVG----MSG IFTIVVMGLF bmy_09353T0/1-734 QLWMSTVFGD DVNHISLSIS ILYLIFYICK LVG----MSG IFTIVIMGLF ENSBTAP00000053611/1-1137 QLWMSTVFGE DVNHISLSFS FLYLIFYICK KIGELTEMSG TFTLVIMGLF 301 350 ENSP00000306627/1-1177 LNSTSFKAAI EETLLLEFWT FLSRIAFLMV FTFFGLLIPA HTYLYIEFVD ENSTTRP00000007759/1-1164 LNSTSFKPGV -EALLLEFWS CLSFVAFLMV FTFIGLLIPA HTYLYISFSD bmy_09353T0/1-734 LNSTSFKPGV -EALLLE--- ---------- ---------- ---------- ENSBTAP00000053611/1-1137 LNSTNFKPGV -EALILEFWN CLSFVAFLMV FTFTGLLIPA HTYLYISFSD 351 400 ENSP00000306627/1-1177 IYYSLNIYLT LIVLRFLTLL LISPVLSRVG HEFSWRWIFI MVCSEMKGMP ENSTTRP00000007759/1-1164 IYYSLNICLT LVVFRLLVFL LLSPLLSRLG HGFSWRWAFI MVWSEMKGIP bmy_09353T0/1-734 ---------- -----LLVFL LLSPLLSRLG HDFSWRWAFI MVWSEMKGTP ENSBTAP00000053611/1-1137 IYYSLNIYLT LIMFRLLVFL LLSPLLSRLG HGFSWRWAFI MVWSEMKGTP 401 450 ENSP00000306627/1-1177 NINMALLLAY SDLYFGSDKE KSQILFHGVL VCLITLVVNR FILPVAVTIL ENSTTRP00000007759/1-1164 NINMALLLAY SEYSLGSERE KSQXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09353T0/1-734 NINMALLLAY SEYSLGSERE KSQILFHGVS VSLVSLIVNR FILPMAVTKL ENSBTAP00000053611/1-1137 NINLALLLAY FENSYGSERE KSQILFHGVS VSLISLIVNR FILPMAVTKL 451 500 ENSP00000306627/1-1177 GLRDATSTKY KSVCCTFQHF QELTKSAASA LKFDKDLANA DWNMIEKAIT ENSTTRP00000007759/1-1164 XLHDVTSTKY KSLYYTFQHF QELTISVASA LKFDKDLANA DWNMVEKAIM bmy_09353T0/1-734 GNFVTTMGQS RS-------- ---------- ---------- ---------- ENSBTAP00000053611/1-1137 GLRDVTSTKY KSLYYTFQHF QELTKSVASA LKFDRDLANA DWNIVEKTII 501 550 ENSP00000306627/1-1177 LENPYMLNEE ETTEHQKVKC PHCNKEIDEI FNTEAMELAN RRLLSAQIAS ENSTTRP00000007759/1-1164 LQNPYALGQE EKAEHQKVKC IHCNKEIDET LNIEAMELAK RRLLSAQIAS bmy_09353T0/1-734 -DNPF----- ---------- ---------- ---------- ---------- ENSBTAP00000053611/1-1137 LQNPYALGQG ETKEHQKVKC QHCNKEIDDN LNIEAMELAN RRLLSAQIAS 551 600 ENSP00000306627/1-1177 YQRQYRNEIL SQSAVQVLVG AAESFGEKKG KCMSLDTIKN YSESQKTVTF ENSTTRP00000007759/1-1164 YQRQYRNETL SQSAVQVLVG AAGSFGEK-G EYMSAETIKN YSESKKILVF bmy_09353T0/1-734 ---------- ---------- ---------- EY-------- ---------- ENSBTAP00000053611/1-1137 YQRQYRSETL SQSAIQVLVG AAGSFGEKMV EYMNAETIKN YSESKKILVF 601 650 ENSP00000306627/1-1177 ARKLLLNWVY NTRKEKEGP- SKYFFFRICH TIVFTEEFEH VGYLVILMNI ENSTTRP00000007759/1-1164 TRKVLLNWVY NTKKEKGIP- SSHCFLRVCH KIVFTDEFEY VGYLVILMNI bmy_09353T0/1-734 ---------- ---------- SKHCFLRVCH KIVFTDEFEY VGYLVILMNM ENSBTAP00000053611/1-1137 TRKVLLNWVY NTKKEKGIPS SRHCFLRACH KIVFTDEFEY IGYLVILMNM 651 700 ENSP00000306627/1-1177 FPFIISWISQ LNVIYHSELK HTNYCFLTLY ILEALLKIAA MRKDFFSHAW ENSTTRP00000007759/1-1164 FPIIISWISV LNDIYELELA YANYSFLAFY ITEALLKIAA MKKEYFLHAW bmy_09353T0/1-734 FPIIISWISV LNDIYELELR YANYSFLAFY IMEALLKIAA MKKEYFLHAW ENSBTAP00000053611/1-1137 FPIIISCISV LNDIYETELA YANYSFLAFY IMEALLKIAA MRKEYFFHAW 701 750 ENSP00000306627/1-1177 NIFELAITLI GILHVILIEI DTIKY-IFNE TEVIVFIKVV QFFRILRIFK ENSTTRP00000007759/1-1164 NLFELTITLI GIIDVMLIET NSINYHTFDL IQTVAFIKVV RFLRVLRILK bmy_09353T0/1-734 NLFELTITLI GIVDVMFIET NSINYYTFDL IQTTVFIKVV RFLRVLRILK ENSBTAP00000053611/1-1137 NLFELTITLV GIIDVMLIET NSINYYIFDL VQIVIIMKIV RFLRILRILK 751 800 ENSP00000306627/1-1177 LIAPKLLQII DKRMSHQKTF WYGILKGYVQ GEADIMTIID QITSSKQIKQ ENSTTRP00000007759/1-1164 LVTPKLLQIL DKKMSHQLSF KYAILKGYIQ GEADIMTIID KIASSKQIKQ bmy_09353T0/1-734 LVTPKLLQIL DKKMSHQLSF KYAILKGYIQ GEADIMTIID KIASSKQVKQ ENSBTAP00000053611/1-1137 LVTPRLLQIL DKRMSHQLSF RYAILKGYVQ GEADIMTIID KIASSKQVKQ 801 850 ENSP00000306627/1-1177 MLLKQVIRNM EHAIKELGYL EYDHPEIAVT VKTKEEINVM LNMATEILKA ENSTTRP00000007759/1-1164 MLLRRITKNT GHAMEELXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09353T0/1-734 MLLRRVTKNT GHAMKELGYL EYDHPEIAVT MKTKEEINVM LSLAREIVKV ENSBTAP00000053611/1-1137 MLLRRVTKNT GHAMKELGYL EYDHPEIAVT MKTKEEINVM LSLAREIVKV 851 900 ENSP00000306627/1-1177 FGLKGIISKT EGAGINKLIM AKKKEVLDSQ SIIRPLTVEE VLYHIPWLDK ENSTTRP00000007759/1-1164 XXXXXXXXXX XXXEINKLIM ARKREILDLQ PMYKPLTVDK ALYHIPWLDK bmy_09353T0/1-734 FRLKGILHKT EAFEINKLIM ARKREILDLQ PMYKPLTVDE ALYHIPWLDK ENSBTAP00000053611/1-1137 FRLKGILHKI EGSEINKIIM AKKRDILDFQ PTYKPLTVEE ALYHIPWLDK 901 950 ENSP00000306627/1-1177 NKDYINFIQE KAKVVTFDCG NDIFEEGDEP KGIYIIISGM VKLEKSKPGL ENSTTRP00000007759/1-1164 DQDCISFIQE RSRVVTFDCG NDIFEEGDEP QGIYVIISGM VKLQRSKPGL bmy_09353T0/1-734 DQDHISFIQE RSRIVTFDCG NDIFEEGDEP QGIYVIISGM VKDWNYKMQL ENSBTAP00000053611/1-1137 DEEHISFIQE RSRVVTFDCG NDIFEEGDEP KGIYVIISGM VKLQRSKPGL 951 1000 ENSP00000306627/1-1177 GIDQMV-ESK EKDFPI-IDT DYMLSGEII- GEI-NCLTNE ----PMKYSA ENSTTRP00000007759/1-1164 GIDQIIWESE EKDYQI-TYT DFVISGAII- GEL-NCLTNE ----PMKYSA bmy_09353T0/1-734 KLCNIYVKDI PKNTKTDIYD ETVIYVILIH GAVEDCQLRK AYKAPFLIPI ENSBTAP00000053611/1-1137 GIDQIIWESE EKDYQI-TYT DFVISGAVI- GEL-NCLTNA ----PMKYSA 1001 1050 ENSP00000306627/1-1177 TCKTVVETCF IPKTHLYDAF ------EQCS PLIKQKMWLK LGLAITARKI ENSTTRP00000007759/1-1164 TCKTVVEAYF IPKHHLYEAF ------EQFC PHIEYKMWLK LGLSITAKKI bmy_09353T0/1-734 TCHQ----SF VSVLELMQSF LKQLKAEPMK NILKKRQVLR KKMHIF--KV ENSBTAP00000053611/1-1137 TCKTVVETCF IPKNHLYEAF ------EQFY PHIEYRMWLK LGLSITAKKI 1051 1100 ENSP00000306627/1-1177 REHLSYEDWN YNMQLKLSNI YVVDIPMSTK TDIYDENLIY VILIHGAVED ENSTTRP00000007759/1-1164 REHLSYEDWN YKMQLKLCNV YVKNIPKNTK TDIYGETVIY VILIHGAVED bmy_09353T0/1-734 RQDSPKQ--- -NEETSPAPI QQENIDQGSX EDLCYTLIKH SVLGKRPSGN ENSBTAP00000053611/1-1137 REHLSYEDWN YKMQLKLSNI YVKDIPKNTK TDIYDETVIY VILNMSSGKE 1101 1150 ENSP00000306627/1-1177 CLLRKTYRAP FL--IPITCH QIQSIEDFTK VVIIQTPINM KTFRRNIRKF ENSTTRP00000007759/1-1164 CQLRKAYKAP FL--IPITCH QIQGTEDFTK VTIVRTAIDS KKFRWNTRKY bmy_09353T0/1-734 DAEEYYENVS LKAERPRESL GGNGTE---- YSLVPSAPRH PSSPEDEYEL ENSBTAP00000053611/1-1137 ILIHIFSKRI FYATMTDKCL QIQGTEDFTK VTIVQTSIYS KRFRWNTRKY 1151 1200 ENSP00000306627/1-1177 VPKHKSYLTP GLIGSVGTLE EGIQEERNVK EDGAHSAATA RSPQPCSLLG ENSTTRP00000007759/1-1164 I-TSRKRAHP VASAASRTNE EHPQEETSTQ VNEAHSAVTG RSPSSS---- bmy_09353T0/1-734 LMPSRIFSDS LI-------- ---------- ---------- ---------- ENSBTAP00000053611/1-1137 I--------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000306627/1-1177 TKFNCKESPR INLRKVRKE ENSTTRP00000007759/1-1164 -------CPI TSLKKVNGQ bmy_09353T0/1-734 ---------- --------- ENSBTAP00000053611/1-1137 ---------- ---------