KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:07:42 2014 Check: 00 .. Name: ENSBTAP00000053632/1-1306 Len: 1308 Check: 7582 Weight: 1.00 Name: ENSTTRP00000003213/1-1273 Len: 1308 Check: 2512 Weight: 1.00 Name: bmy_00276T0/1-766 Len: 1308 Check: 4003 Weight: 1.00 Name: BACU005181/1-903 Len: 1308 Check: 7895 Weight: 1.00 // 1 50 ENSBTAP00000053632/1-1306 MNDDNSDGKT EDELQSLFIC DKNGNTYGCK QKSPPTQNAS TNNVSWHCAN ENSTTRP00000003213/1-1273 MNDDNSDDKT EDELQSLFIS DKNGNTYAYN QKSPCTQNSS TNNVSWNSAN bmy_00276T0/1-766 MNDDNSDDKT EEELQSLFIS DKNGNTYAYN QKSPCTQNSS TNNVSWNSAN BACU005181/1-903 MNDDNSDDKT EEELQSLFIS DKNGNTYAYN QKSPCTQNSS TNNVSWNSAN 51 100 ENSBTAP00000053632/1-1306 PDGMVVDYET GSDVDIGENI SLNPQCVEVH DHQKSSSNFI SKEALEAHTD ENSTTRP00000003213/1-1273 PDDMVVDYET NSAVAFGENI SLNPQCVEVL EHQKSSSDFV SKEMLDMHKD bmy_00276T0/1-766 PDDMVVDYET NSAVVIGENI SLNPQRVEVL EHQKSSSDFV SKEMLDMHKD BACU005181/1-903 PDDMVVDYET NSAVVIGENI SLNPQCVEVL EHQKSSSDFV SKEMLDMHKD 101 150 ENSBTAP00000053632/1-1306 STCPSFAHVV NTVEPKHLHS SCHSLGSL-N QSVETSLTFV WKTNSDDLNC ENSTTRP00000003213/1-1273 STCLSFAHVV NTEEPKDLRN SCHSLESFQD QSVETSLPFV WNPNDDDLNC bmy_00276T0/1-766 STCLSFAHVV NTEEPKDLHS SCHSLESFQD QSVETSLPFV WNPN-DDLNC BACU005181/1-903 STCLSFAHVV NTEEPKDLHS SCHSLESFQD QSVETSLPFV WNPNDDDLNC 151 200 ENSBTAP00000053632/1-1306 TDNPTALLLN QTFDIKVDNV NGTFVTHDTT GKSQSLPTTA SLQPNNTRSI ENSTTRP00000003213/1-1273 TGNPTALALN QTFDMKVDNV NCTFITHDTT GKSQSLPTTA SLQPTSMRSR bmy_00276T0/1-766 TENPTALALN QTFDMKVANV NCTFITHDTT GKSQSLPTTA SLQPTSVRSR BACU005181/1-903 TENPTALALN QTFDMKVDNC NCTFITHDTT GKSQSLPTTA SLQPTSVRSR 201 250 ENSBTAP00000053632/1-1306 NTSLSCSILP SSHSDKIHVR ETSCDRESFE NSQAAASQAQ DTTYTVFSDM ENSTTRP00000003213/1-1273 NTSSSCCIPP SSHSDKIYVR EMSYDRDSFE NPQATASQAQ DTTYTAFSDM bmy_00276T0/1-766 NTSLSCSIPP SSHSDKIYVR EMSYDRDSFE NPQATASQAQ DATYTAFSDM BACU005181/1-903 NTSSSCSIPP SSHSDKIYAR EMSYDRDSFE NPQATASQAQ DTTYTAFSDM 251 300 ENSBTAP00000053632/1-1306 VMQIDVVVPD TENQCHCSSG KVASEYPDGA QQRRGTEKEI QALTQVSDGM ENSTTRP00000003213/1-1273 VMQTDVVLPD TENHCHCSSG KVTSEYPDGA QQRLGGEKEI QALTPVSDGM bmy_00276T0/1-766 VMQTDVVLPD TENHCHCSLG KVTSEYPDGA QQRLGGEKEI QALTPVSDDM BACU005181/1-903 VMQTDVVLPD TANHCHCSSG KVTSEYPDGA QQRLGGEKEI QALTPVSHGM 301 350 ENSBTAP00000053632/1-1306 DVPSGSVLQE FFCPSKDEPN RETHSQSSYG QKEMGQNVRE TVSNCLIDDE ENSTTRP00000003213/1-1273 DVPSGSVLQE FFCSSKDEPN SERHSQSSYG QKEMGQNVRE TVSTCLIDDE bmy_00276T0/1-766 DVPNGSVLQE FFCSSKDEPN SERHSQSSYG QKEVGQNVRE TVSSCLIDDE BACU005181/1-903 DVPNGSVLQE FFCSSKDEPN SERHSQSSYG QKEVGQNVRE TVSNCLTDDE 351 400 ENSBTAP00000053632/1-1306 CPLLVPAVNK SKTQVLGPKH QVTGTKDTPT APNEKHLGTQ NLTIELIPNS ENSTTRP00000003213/1-1273 CPLLVPAFDK SKTQVLDPEH QVTVAKDTPV ASNEKDLGTR NHTIELIPNS bmy_00276T0/1-766 CPLLVPAFDK SKTQVLDPEH QVTVAEDTPV ASNEKDLGTR NHTVELIPNS BACU005181/1-903 CPLLVPAFDK SKTQVLDPEH QVTVAKDTPV ASNEKDLGTR NHTVELIPNS 401 450 ENSBTAP00000053632/1-1306 PPGQKEASVL ELTWNADDMV ISTDNRICMS TPVLEPINTT FSVSPVEGVE ENSTTRP00000003213/1-1273 LPGQKVASSF ELTWDADDMV ISTNNIVCMS TPVLEPANAT FSLSPIEATE bmy_00276T0/1-766 PPGQKVASSF ELTWDADDMV ISTNNIVCMS TPVLEPTNAT FSISPIEGTE BACU005181/1-903 PPGQKVASSF ELTWDADDMV ISTNNIVCMS TPVLEPTNAT FSISPIEGTE 451 500 ENSBTAP00000053632/1-1306 KCSKVPTSNR ELRCLPNLKA APMIVSKLNL GKSTTKANSP LGSKVRKTKI ENSTTRP00000003213/1-1273 KWSKVQKSNR ELRRLPNLKG APMNMSKPNL GKSTTKTNSP LGSKVRKTEI bmy_00276T0/1-766 KWSKVQKSNR ELRRLPNLKG APMNMSKPNL GKSTTKTNSP LGSKVRKTEI BACU005181/1-903 KWSKVQKSNR ELRRLPNLKG APMNMSKPNL GKSTSKTNSP LGSKVRKTEI 501 550 ENSBTAP00000053632/1-1306 ISYPRPNFKN VKAKVISRPM LQPKDPALSK AAPRPQLTGA SSPSSVSSSR ENSTTRP00000003213/1-1273 ISYPRPNFKN VKAKVVSRPV LPSKDPALSK AAPRPQLTGA SSPSSVSSSR bmy_00276T0/1-766 ISYPRPNFKN VKAKVVSRPV LQSKDPALSK AAPRPQLTGA SSPSSVSSSR BACU005181/1-903 ISYPRPNFKN VKAKVVSRPV LQSKDPALSK AAPRPQLTGA SSPSPVSSSR 551 600 ENSBTAP00000053632/1-1306 QSTGLSKTAT YDLNADPKAE IPINKTHKQQ FNKLITSQAV HVTTHSKNAS ENSTTRP00000003213/1-1273 PSTALRKTPT SDLNADTKAE ILNNKTHKQQ FNKLITSQAV HVTTHSKNAS bmy_00276T0/1-766 PSTALRKTPT SDLNADTKAE ILINKTHKQQ FNKLITSQAV HVTTHSKNAS BACU005181/1-903 PSTALRRTPT SDLNADTKAE ILINKTHKQQ FNKLITSQAV HVTTHSKNAS 601 650 ENSBTAP00000053632/1-1306 HKKHPRTTSA MKSNQEDVDK ASSSNPACET GSVAAVFQ-I KDELPVKMES ENSTTRP00000003213/1-1273 HKVV-R-TSA VKSNQEDVDK ASSSNSACET GSVAAVFQKI KGELPIKMES bmy_00276T0/1-766 HKVL-RTTSA MKSNQEDVDK ASSSNSACET GSVAAVFQRI KGELPIKMES BACU005181/1-903 HKVL-RTTSA MKSNQEDVDK ASSSNSACET GSVAAVFQKI KGELPIKMES 651 700 ENSBTAP00000053632/1-1306 TEGLEVPSTS HIDRISPEKK GEEGNGTPVA KQELKKEILS ETSDFGSLFL ENSTTRP00000003213/1-1273 TECLQMSYTS NIDRISPENK GEKENGTPMA KQELKKEIMN ETFDYGSLFL bmy_00276T0/1-766 TECLQMSYTS NIDRISPENK GEKENGTPVA KQELKKEIMN ETFDYGSLFL BACU005181/1-903 TECLQMSYTS NIDRISPENK GEKENGTPMA KQELKKEIMN ETFDYGSLFL 701 750 ENSBTAP00000053632/1-1306 DSASKPAGIS GGKPATKPAT PSPSILRKTP GPKARVGPSV SCLRRNSDSR ENSTTRP00000003213/1-1273 GSASKTATIS G----RSLAK SNCSILRKTP GPKAKVGPSA SCLRRNSDSR bmy_00276T0/1-766 GSASKTATIS G----RSLAK PNCSILRKTP GPKAKVGPSV SCLRRNSDSR BACU005181/1-903 GSASKTATIS G----RSLAK PNCSILRKTP GPKAKVGPSV SCLRRNSDSR 751 800 ENSBTAP00000053632/1-1306 NLTCDRAVSP QRIRRVSSSG KPASLKTAQP SRVNLPRLLP RPKASVKNPA ENSTTRP00000003213/1-1273 NLNSDRAVSP QR-KRVSSSG KPASLKTAQP SWVNSPRPLP KSKASLKSSA bmy_00276T0/1-766 NLNSDRAVSP QRIRRVSSSG ---------- ---------- ---------- BACU005181/1-903 NLNSERAVSP QRIRRVSSSG ---------- --------LE GPEEQTQEEV 801 850 ENSBTAP00000053632/1-1306 LRRTESASSV ASVHSELSAY SNNSGNAAVI KYEEKPPKPA FQNGSSASLY ENSTTRP00000003213/1-1273 LRRTGSTSSV ASTHTDLSTY SNNSGNNAVI KYEEKPPKPA FQNGSSGSLY bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 W--------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000053632/1-1306 LKPLVPRGHT HFLKTPPKDP SRKSLFTALN TVEKGRQKSP RSLCIQTQTS ENSTTRP00000003213/1-1273 LKPLVPRAHV HLLKTPPKGP SRKGLYTALN AXXXXXXXXX XXXXIQTQTS bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 ---LAEEGFA RISISIPRGA EWEGGICQLQ VFILWEENRR GAKDIGRGNN 901 950 ENSBTAP00000053632/1-1306 PDVLSSEKAL ELAQYKSKCT KQSGIILQLK QLLSLGNTKF EALTVVAQHL ENSTTRP00000003213/1-1273 PDVLSSEKSL ELAQYKTKCE NQSGFI-QLK QLLSCGNTKF EALTVVIQHL bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 P--------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000053632/1-1306 LSEREEALKQ NKTLSQELVN LRGELVTVST TCEKLEKARN ELQIAYEGFV ENSTTRP00000003213/1-1273 LSEREEALKQ HKTLSQELVN LRGELVTAST TCEKLEKARN ELQIAYEGFV bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000053632/1-1306 QKLNQQHQTD LTELENRLKE FYTGECEKLQ NIYIEEAEKY KTQLQEQFDN ENSTTRP00000003213/1-1273 QKLNQQHQTD LTELENRLKE FYTGECEKLQ NIYIEEAEKY KTQLQEQFDN bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 ---------- ---------- -YFGCCHSLG SW-------- ---------- 1051 1100 ENSBTAP00000053632/1-1306 LNATHETSKL KIEASHSEKI ELLKKAYENS LSEIKKSHEM EKKSLEDLLY ENSTTRP00000003213/1-1273 LSAAHETSKL EIEASHSEKI DLLKKAYEAS LSEIKKSHEM EKKSLEDLLY bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 ---------- ---------- ---------G ISEIKAS--- ---------- 1101 1150 ENSBTAP00000053632/1-1306 EKQESLEKQI SDLKSENDTL NEKLKSEEQK RISREKANLK NPQIMYLEQE ENSTTRP00000003213/1-1273 EKQESLEKQI SGLKSENDTL NEKLKSEEQK RISREKANLK NPQIMYLEQE bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000053632/1-1306 LESLKAVLEI KNEKLHQQDV KLMKMEKLVD SNTALVDRLK RFQQENEELK ENSTTRP00000003213/1-1273 LESLKAVLDI KNEKLHQQDI KLMKMEKLVD NNTALVDKLK RFQQENEELK bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 ------VLTV ---------- ---------- ---AAVQGLW IFQMTGSPFL 1201 1250 ENSBTAP00000053632/1-1306 ARMDKHMAIS RQLSTEQAVL QESLEKESKV NKRLSMENEE LLWKLHNGNL ENSTTRP00000003213/1-1273 ARMDKHMAIS RQLSTEQAVL QESLEKESKV NKRLSMENEE LLWKLHNGDL bmy_00276T0/1-766 ----KH---- ---------- ---------- ---------- ---------- BACU005181/1-903 LRCQQH---- ---------- ---------- ---LWLRGPE GPGRCHPGLL 1251 1300 ENSBTAP00000053632/1-1306 CSPKRSPTSP AAPFQSPRNS GSFPSPSISH PDDLPGNQRQ TEGISAGLTL ENSTTRP00000003213/1-1273 CSPKRSPTSP AIPFQSPRNS GSFPSPSISP R--------- ---------- bmy_00276T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU005181/1-903 LGALRSSTAT APGS------ ---------- ---------- ---------- 1301 1350 ENSBTAP00000053632/1-1306 PATAHHPP ENSTTRP00000003213/1-1273 -------- bmy_00276T0/1-766 -------- BACU005181/1-903 --------