KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:43 2014 Check: 00 .. Name: BACU001820/1-656 Len: 685 Check: 388 Weight: 1.00 Name: ENSTTRP00000003178/1-606 Len: 685 Check: 1021 Weight: 1.00 Name: ENSBTAP00000053634/1-607 Len: 685 Check: 3440 Weight: 1.00 Name: bmy_17434T0/1-570 Len: 685 Check: 6515 Weight: 1.00 Name: ENSP00000286614/1-607 Len: 685 Check: 2747 Weight: 1.00 // 1 50 BACU001820/1-656 ---------- ---MPRRAGV NSS------L CECTRSPQGD HKPLENWLRL ENSTTRP00000003178/1-606 MILLTFSTGR RLDFVHHSGV FYLQTLLWIL C-ATVCGTEQ YFNVEVWLQK ENSBTAP00000053634/1-607 MSVLTSSTGR RLDFVHHSGI LYLQTLLWIL C-ATVCGTEQ YFNVEVWLQK bmy_17434T0/1-570 ---------- ---MQTQL-- ---------T C--------- -----VWLQK ENSP00000286614/1-607 MILLTFSTGR RLDFVHHSGV FFLQTLLWIL C-ATVCGTEQ YFNVEVWLQK 51 100 BACU001820/1-656 YGYLPQPSRH MSTMRSAQIL ASALAEMQRF YGIPITGVLD EETKAWMKRP ENSTTRP00000003178/1-606 YGYLPPTDPR MSVLRSAETM QSALAAMQQF YGINMTGKVD RNTIDWMKKP ENSBTAP00000053634/1-607 YGYLPPSDPR MSVLRSAETM QSALAAMQQF YGINMTGKVD RNTIDWMKKP bmy_17434T0/1-570 YGYLPPTDPR MSVLRSAETM QSALAAMQQF YGINMTGKVD RNTIDWMKKP ENSP00000286614/1-607 YGYLPPTDPR MSVLRSAETM QSALAAMQQF YGINMTGKVD RNTIDWMKKP 101 150 BACU001820/1-656 RCGVPDQFGV RVKANLRRRR KRYALTGRKW NNHHLTFSIQ NYTEKLGWYH ENSTTRP00000003178/1-606 RCGVPDQ--T RGSSKFNIRR KRYALTGQKW QHKHITYSIK NVTPKVGDPE ENSBTAP00000053634/1-607 RCGVPDQ--T RGSSKFNIRR KRYALTGQKW QHKHITYSIK NVTPKVGDPE bmy_17434T0/1-570 RCGVPDQ--T RGSSKFNIRR KRYALTGQKW QHKHITYSIK NVTPKVGDPE ENSP00000286614/1-607 RCGVPDQ--T RGSSKFHIRR KRYALTGQKW QHKHITYSIK NVTPKVGDPE 151 200 BACU001820/1-656 SLEAVRRAFR VWEQATPLVF QEVPYEDIRL RRQKEADIMV LFASGFHGDS ENSTTRP00000003178/1-606 TRKAIRRAFD VWQNVTPLTF EEVPYSELE- NGKRDVDITI IFASGFHXXX ENSBTAP00000053634/1-607 TRKAIRRAFD VWQNVTPLTF EEVPYSELE- NGKRDVDITI IFASGFHGDS bmy_17434T0/1-570 TRKAIRRAFD VWQNVTPLTF EEVPYSELE- NGKRDVDITI IFASGFHGDS ENSP00000286614/1-607 TRKAIRRAFD VWQNVTPLTF EEVPYSELE- NGKRDVDITI IFASGFHGDS 201 250 BACU001820/1-656 SPFDGTGGFL AHAYFPGPGL GGDTHFDADE PWTFSSTDLH GNSLFLVAVH ENSTTRP00000003178/1-606 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053634/1-607 SPFDGEGGFL AHAYFPGPGI GGDTHFDSDE PWTLGNPNHD GNDLFLVAVH bmy_17434T0/1-570 SPFDGEGGFL AHAYFPGPGI GGDTHFDSDE PWTLGNPNHD GNDLFLVAVH ENSP00000286614/1-607 SPFDGEGGFL AHAYFPGPGI GGDTHFDSDE PWTLGNPNHD GNDLFLVAVH 251 300 BACU001820/1-656 ELGHALGLEH SSNPSAIMAP FYQWMDIDNF QLPEDDLRGI QQLYGTPDGQ ENSTTRP00000003178/1-606 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXPPDKI ENSBTAP00000053634/1-607 ELGHALGLEH SNDPTAIMAP FYQYMETDNF KLPSDDLQGI QKIYGPPDKI bmy_17434T0/1-570 ELGHALGLEH SNDPTAIMAP FYQYMETDNF KLPNDDLQGI QKIYGPPDKI ENSP00000286614/1-607 ELGHALGLEH SNDPTAIMAP FYQYMETDNF KLPNDDLQGI QKIYGPPDKI 301 350 BACU001820/1-656 PQPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG ENSTTRP00000003178/1-606 PPP------- ---------- ---------- ----TIPLPT VPPHRSNPPA ENSBTAP00000053634/1-607 PPP------- ---------- ---------- ----TRPLPT VPPHRSVPPA bmy_17434T0/1-570 PPP------- ---------- ---------- ----TRPLPT VPPHRSNPPA ENSP00000286614/1-607 PPP------- ---------- ---------- ----TRPLPT VPPHRSIPPA 351 400 BACU001820/1-656 KPGQPPKPGP PAQPRATERP DQYG--PNIC DGDFDTVAVL RGEMFVFKGR ENSTTRP00000003178/1-606 DPRKNDRPKP PRPP--TGRP SYPGAKPNIC DGNFNTLAIL RREMFVFKDQ ENSBTAP00000053634/1-607 DPRKNDRPKP PRPP--TGRP SYPGAKPNIC DGNFNTLAIL RREMFVFKDQ bmy_17434T0/1-570 DPRKNDRPKP PRPP--TGRP SYPGAKPNIC DGNFNTLAIL RREMFVFKDQ ENSP00000286614/1-607 DPRKNDRPKP PRPP--TGRP SYPGAKPNIC DGNFNTLAIL RREMFVFKDQ 401 450 BACU001820/1-656 WFWRVRHNRV LDNYPMPIGH FWRGLPSDIS AAYERQDGRF VF-------- ENSTTRP00000003178/1-606 WFWRVRNNRV MDGYPMQITY FWRGLPPSID AVYENSDGNF VFFKGNKYWV ENSBTAP00000053634/1-607 WFWRVRNHRV MDGYPMQITY FWRGLPPSID AVYENSDGNF VFFKGNKYWV bmy_17434T0/1-570 WFWRVRNNRV MDGYPMQITY FWRGLPPSID AVYENSDGNF VFFKGNKYWV ENSP00000286614/1-607 WFWRVRNNRV MDGYPMQITY FWRGLPPSID AVYENSDGNF VFFKGNKYWV 451 500 BACU001820/1-656 FKEANLEPGY PQPLTSYGLG IPYDHIDTAI WWEPTGHTFF FQEDRYWRFN ENSTTRP00000003178/1-606 FKDTTLQPGY PHDLITLGSG IPPHGIDSAI WWEDVGKTY- LKGDRYWRYS ENSBTAP00000053634/1-607 FKDTTLQPGY PHDLITLGSG IPPHGIDSAI WWEDVGKTYF FKGDRYWRYS bmy_17434T0/1-570 FKDTTLQPGY PHDLITLGSG IPPHGIDSAI WWEDVGKTYF FKGDRYWRYS ENSP00000286614/1-607 FKDTTLQPGY PHDLITLGSG IPPHGIDSAI WWEDVGKTYF FKGDRYWRYS 501 550 BACU001820/1-656 EDTQRGDPGY PKPISVWQGI PASPKGAFLS NDAAYTYFYK GTKYWKFDNE ENSTTRP00000003178/1-606 EEMKTMDPGY PKPITVWKGI PESPQGAFVH KENGFTYFYK GKEYWKFNNQ ENSBTAP00000053634/1-607 EEMKTMDPGY PKPITVWKGI PESPQGAFVH KENGFTYFYK GKEYWKFNNQ bmy_17434T0/1-570 EEMKTMDPGY PKPITVWKGI PESPQGAFVH KENGFTYFYK GKEYWKFNNQ ENSP00000286614/1-607 EEMKTMDPGY PKPITVWKGI PESPQGAFVH KENGFTYFYK GKEYWKFNNQ 551 600 BACU001820/1-656 RLRMEPGYPK SILRDFMGCQ EHVEPGPRWP DVARPPFNPD GGAEPGAGGD ENSTTRP00000003178/1-606 ILKVEPGYPR SILKDFMGCD ---------- ---------- ---------- ENSBTAP00000053634/1-607 ILKVEPGYPR SILKDFMGCD ---------- ---------- ---------- bmy_17434T0/1-570 ILKVEPGYPR SILKDFMGCD ---------- ---------- ---------- ENSP00000286614/1-607 ILKVEPGYPR SILKDFMGCD ---------- ---------- ---------- 601 650 BACU001820/1-656 SEEGHEAGPG GKEGDFGEGT DEDGGSRVVV QMEEVTRTVN MVMVLVPPML ENSTTRP00000003178/1-606 -------GPT DRD---KEGH SPPDDVDIVI KLDNTASTVK AIAIVIP-CI ENSBTAP00000053634/1-607 -------GPT DRE---KEGH SPPDDVDIVI KLDNTASTVK AIAIVIP-CI bmy_17434T0/1-570 -------GPT DRD---KEGH SPPDDVDIVI KLDNTASTVK AIAIVIP-CI ENSP00000286614/1-607 -------GPT DRV---KEGH SPPDDVDIVI KLDNTASTVK AIAIVIP-CI 651 700 BACU001820/1-656 LLLCILGLTY ALVQMQRKGA PRMLLYCKRS LQEWV ENSTTRP00000003178/1-606 LALCLLVLVY TVFQFKRKGT PRHILYCKRS MQEWV ENSBTAP00000053634/1-607 LALCLLVLVY TVFQFKRKGT PRHILYCKRS MQEWV bmy_17434T0/1-570 LALCLLVLVY TVFQFKRKGT PRHILYCKRS MQEWV ENSP00000286614/1-607 LALCLLVLVY TVFQFKRKGT PRHILYCKRS MQEWV