KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:44 2014 Check: 00 .. Name: ENSTTRP00000006766/1-1199 Len: 1202 Check: 3035 Weight: 1.00 Name: ENSP00000401721/1-1202 Len: 1202 Check: 5189 Weight: 1.00 Name: ENSBTAP00000053637/1-1198 Len: 1202 Check: 6183 Weight: 1.00 Name: bmy_03921T0/1-1130 Len: 1202 Check: 4788 Weight: 1.00 Name: BACU008135/1-1138 Len: 1202 Check: 3100 Weight: 1.00 // 1 50 ENSTTRP00000006766/1-1199 MNFEVLDPGL AEYAPAMHST LDPVLDAHLN PSLLQNVELD PEGVALEALP ENSP00000401721/1-1202 MNFEGLDPGL AEYAPAMHSA LDPVLDAHLN PSLLQNVELD PEGVALEALP ENSBTAP00000053637/1-1198 MNFEGLDPGL AEYAPAMHSA LDPVLDAHLN PSLLQNVELD PEGVALEALP bmy_03921T0/1-1130 MNFEVLDPGL AEYAPAMHSA LDPVLDAHLN PSLLQNVELD PEGVALEALP BACU008135/1-1138 MNFEVLDPGL AEYAPAMHSA LDPVLDAHLN PSLLQNVELD PEGVALEALP 51 100 ENSTTRP00000006766/1-1199 VQESVHIMEG VYSELHSVVA EVGVPVSVSH FDLHEEMLWV GSHGGHATSF ENSP00000401721/1-1202 VQESVHIMEG VYSELHSVVA EVGVPVSVSH FDLHEEMLWV GSHGGHATSF ENSBTAP00000053637/1-1198 VQESVHIMEG VYSELHSVVA EVGVPVSVSH FDLHEEMLWV GSHGGHATSF bmy_03921T0/1-1130 VQESVHIMEG VYSELHSVVA EVGVPVSVSH FDLHEEMLWV GSHGGHATSF BACU008135/1-1138 VQESVHIMEG VYSELHSVVA EVGVPVSVSH FDLHEEMLWV GSHGGHATSF 101 150 ENSTTRP00000006766/1-1199 FGPALERYSS FQVNGSDDIR QIQSLENGIL FLTKNNLKYM ARGGLIIFDY ENSP00000401721/1-1202 FGPALERYSS FQVNGSDDIR QIQSLENGIL FLTKNNLKYM ARGGLIIFDY ENSBTAP00000053637/1-1198 FGPTLERYSS FQVNGSDDIR QIQSLENGIL FLTKNNLKYM ARGGLIIFDY bmy_03921T0/1-1130 FGPALERYSS FQVNGSDDIR QIQSLENGIL FLTKNNLKYM ARGGLIIFDY BACU008135/1-1138 FGPALERYSS FQVNGSDDIR QIQSLENGIL FLTKNNLKYM ARGGLIIFDY 151 200 ENSTTRP00000006766/1-1199 LLDESEDMHS LLLTDSSTLL VGGLQNHILE IDLNTVQETQ KYAVETPGVT ENSP00000401721/1-1202 LLDENEDMHS LLLTDSSTLL VGGLQNHIIE IDLNTVQETQ KYAVETPGVT ENSBTAP00000053637/1-1198 LLDESEDMHS LLLTDSSTLL IGGLQNHILE IDLNTVQETQ KYTVETPGVT bmy_03921T0/1-1130 LLDESEDMHS LLLTDSSTLL VGGLQNHILE IDLNTVQETQ KYAVETPGVT BACU008135/1-1138 LLDESEDMHS LLLTDSSTLL VGGLQNHILE IDLNTVQETQ KYAVETPGVT 201 250 ENSTTRP00000006766/1-1199 IMRQTNRFFF CGHTSGRXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401721/1-1202 IMRQTNRFFF CGHTSGKVSL RDLRTFKVEH EFDAFSGSLS DFDVHGNLLA ENSBTAP00000053637/1-1198 IMRQTNRFFF CGHTSGKVSL RDLRTFKVEH EFDAFSGSLS DFDVHGNLLA bmy_03921T0/1-1130 IMRQTNRFFF CGHTSGKVSL RDLRTFKVEH EFDAFSGSLS DFDVHGNLLA BACU008135/1-1138 IMRQTNRFFF CGHTSGKVSL RDLRTFKVEH EFDAFSGSLS DFDVHGNLLA 251 300 ENSTTRP00000006766/1-1199 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401721/1-1202 ACGFSSRLTG LACDRFLKVY DLRMMRAITP LQVHVDPAFL RFIPTYTSRL ENSBTAP00000053637/1-1198 TCGFSSRLTG LACDRFLKVY DLRMMRAITP LQVHVDPAFL RFIPTYTSRL bmy_03921T0/1-1130 TCGFSSRLTG LACDRFLK-- ---------- ---------- ---------- BACU008135/1-1138 TCGFSSRLTG LACDRFLKVY DLRMMRAITP LQVHVDPAFL RFIPTYTSRL 301 350 ENSTTRP00000006766/1-1199 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401721/1-1202 AIISQSGQCQ FCEPTGLANP ADIFHVNPVG PLLMTFDVSA SKQALAFGDS ENSBTAP00000053637/1-1198 AIISQSGQCQ FCEPTGLANP ADIFHVNPVG PLLMTFDVSA SKQALAFGDS bmy_03921T0/1-1130 --------CQ FCEPTGLANP ADIFHVNPVG PLLMTFDVSA SKQALAFGDS BACU008135/1-1138 AIISQSGQCQ FCEPTGLANP ADIFHVNPVG PLLMTFDVSA SKQALAFGDS 351 400 ENSTTRP00000006766/1-1199 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401721/1-1202 EGCVHLWTDS PEPSFNPYSR ETEFALPCLV DSLPPLDWSQ DLLPLSLIPV ENSBTAP00000053637/1-1198 EGCVHLWTDS PEPSFNPYSR ETEFALPCLV DSLPPLDWSQ DLLPLSLIPV bmy_03921T0/1-1130 EGCVHLWTDS PEPSFNPYSR ETEFALPCLV DSLPPLDWSQ DLLPLSLIPV BACU008135/1-1138 EGCVHLWTDS PEPSFNPYS- ---------- ---------- ---------- 401 450 ENSTTRP00000006766/1-1199 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401721/1-1202 PLTTDTLLSD WPAANSAPAP RRAPPVDAEI LRTMKKVGFI GYAPNPRTRL ENSBTAP00000053637/1-1198 PLTTDTLLSD WPAANSAPAP RRAPPVDAEI LRTMKKVGFI GYAPNPRTRL bmy_03921T0/1-1130 PLTTDTLLSD WPAANSAPAP RRAPPVDAEI LRTMKKVGFI GYAPNPRTRL BACU008135/1-1138 ---------- ---------- --------QI LRTMKKVGFI GYAPNPRTRL 451 500 ENSTTRP00000006766/1-1199 XXXIPYRLKE SDSEFDSFSQ VTESPIGREE EPHRHTVSKK YRKVTIKYSK ENSP00000401721/1-1202 RNQIPYRLKE SDSEFDSFSQ VTESPVGREE EPHLHMVSKK YRKVTIKYSK ENSBTAP00000053637/1-1198 RNQIPYRLKE SDSEFDSFSQ VTESPIGREE EPHLHMVSKK YRKVTIKYSK bmy_03921T0/1-1130 RN-------- ---------Q VTESPIGREE EPHRHMVSKK YRKVTIKYSK BACU008135/1-1138 RNQIPYRLKE SDSEFDSFSQ VTESPIGREE EPHRHMVSKK YRKVTIKYSK 501 550 ENSTTRP00000006766/1-1199 LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQVLYFLEP VRCLIQNHLC ENSP00000401721/1-1202 LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQVLYFLEP VRCLIQNHLC ENSBTAP00000053637/1-1198 LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQVLYFLEP VRCLIQNHLC bmy_03921T0/1-1130 LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQVLYFLEP VRCLIQNHLC BACU008135/1-1138 LGLEDFDFKH YNKTLFAGLE PHIPNAYCNC MIQVLYFLEP VRCLIQNHLC 551 600 ENSTTRP00000006766/1-1199 QKEFCLACEL GFLFHMLDLS RGDPCQGSNF LRAFRTIPEA SALGLILADS ENSP00000401721/1-1202 QKEFCLACEL GFLFHMLDLS RGDPCQGNNF LRAFRTIPEA SALGLILADS ENSBTAP00000053637/1-1198 QKEFCLACEL GFLFHMLDLS RGDPCQGSNF LRAFRTIPEA SALGLILADS bmy_03921T0/1-1130 QKEFCLACEL GFLFHMLDLS RGDPCQGSNF LRAFRTIPEA SALGLILADS BACU008135/1-1138 QKEFCLACEL GFLFHMLDLS RGDPCQGSNF LRAFRTIPEA SALGLILADS 601 650 ENSTTRP00000006766/1-1199 DEASGKGNLA RLIQRWNRFI LTQLHQDLQE LEVPQAYRGA GGSSFCSSGD ENSP00000401721/1-1202 DEASGKGNLA RLIQRWNRFI LTQLHQDMQE LEIPQAYRGA GGSSFCSSGD ENSBTAP00000053637/1-1198 DEASGKGNLA RLIQRWNRFI LTQLHQDLQE LEVPQAYRGA GGSSFCSSGD bmy_03921T0/1-1130 DEASGKGNLA RLIQRWNRFI LTQLHQDLQE LEVPQAYRGA GGSSFCSSGD BACU008135/1-1138 DEASGKGNLA RLIQRWNRFI LTQLHQDLQE LEVPQAYRGA GG-SFCSSGD 651 700 ENSTTRP00000006766/1-1199 SVIGQLFSCE MENCSLCRCG SETVRASSTL LFTLSYPEGS NTDKTGKNCD ENSP00000401721/1-1202 SVIGQLFSCE MENCSLCRCG SETVRASSTL LFTLSYPDGS KSDKTGKNYD ENSBTAP00000053637/1-1198 SVIGQLFSCE MENCSLCRCG SETVRASSTL LFTLSYPE-- --DKTGKNCD bmy_03921T0/1-1130 SVIGQLFSCE MENCSLCRCG SETVRASSTL LFTLSYPE-- --DKTGKNCD BACU008135/1-1138 SVIGQLFSCE MENCSLCRCG SETVRASSTL LFTLSYPE-- --DKTGKNCD 701 750 ENSTTRP00000006766/1-1199 FAQVLKRSIC LEQNTQAWCD NCEKYQPTIQ TRNICHLPDI LVINCEVNSL ENSP00000401721/1-1202 FAQVLKRSIC LDQNTQAWCD TCEKYQPTIQ TRNIRHLPDI LVINCEVNSS ENSBTAP00000053637/1-1198 FAQVLKRSIC LEQNTQAWCD NCEKYQPTIQ TRNIRHLPDI LVINCEVNSL bmy_03921T0/1-1130 FAQVLKRSIC LEQNTQAWCD NCEKYQPTIQ TRNICHLPDI LVINCEVNSL BACU008135/1-1138 FAQVLKRSIC LEQNTQAWCD NCEKYQPTIQ TRNICHLPDI LVINCEVNSL 751 800 ENSTTRP00000006766/1-1199 KEADFWRMQA EVAF-IAIKK HGGEISKNKE FALADWKELG SPEGMLMCPS ENSP00000401721/1-1202 KEADFWRMQA EVAFKMAVKK HGGEISKNKE FALADWKELG SPEGVLVCPS ENSBTAP00000053637/1-1198 KEADFWRMQA EVAFKMAIKK HSGEISKNKE FALADWKELG SPEGMLMCPS bmy_03921T0/1-1130 KEADFWRMQA EVAFKIAIKK HGGEISKNKE FALADWKELG SPEGMLMCPS BACU008135/1-1138 KEADFWRMQA EVAFKIAIKK HGGEISKNKE FALADWKELG SPEGMLMCPS 801 850 ENSTTRP00000006766/1-1199 IEELKNVWLP FSIRMKMTKN KGLDVCNWTD GDEMQWGPAR AEEEHGVYVY ENSP00000401721/1-1202 IEELKNVWLP FSIRMKMTKN KGLDVCNWTD GDEMQWGPAR AEEEHGVYVY ENSBTAP00000053637/1-1198 IEELKNVWLP FSIQMKMTKN KGLDVCNWTD GDEMQWGPAR AEEEHGVYVY bmy_03921T0/1-1130 IEELKNVWLP FSIRMKMTKN KGLD------ -----WGPAR ADEEHGVYVY BACU008135/1-1138 IEELKNVWLP FSIRMKMTKN KGLDVCNWTD GDEMQWGPAR ADEEHGVYVY 851 900 ENSTTRP00000006766/1-1199 DLMATVVHIL DSRTGGSLVA HIKVGETYHQ RKEGVTHQQW YLFNDFLIEP ENSP00000401721/1-1202 DLMATVVHIL DSRTGGSLVA HIKVGETYHQ RKEGVTHQQW YLFNDFLIEP ENSBTAP00000053637/1-1198 DLMATVVHIL DSRTGGSLVA HIKVGETYHQ RKEGVTHQQW YLFNDFLIEP bmy_03921T0/1-1130 DLMATVVHIL DSRTGGSLVA HIKVGETYHQ RKEGVTHQQW YLFNDFLIEP BACU008135/1-1138 DLMATVVHIL DSRTGGSLVA HIKVGETYHQ RKEGVTHQQW YLFNDFLIEP 901 950 ENSTTRP00000006766/1-1199 IDKHEAVQFD MNWKVPAILY YIKRNLNSKY NLNIKNPIEA SVLLAEASLA ENSP00000401721/1-1202 IDKHEAVQFD MNWKVPAILY YVKRNLNSRY NLNIKNPIEA SVLLAEASLA ENSBTAP00000053637/1-1198 IDKHEAVQFD MNWKVPAILY YIKRNLNSKY NLNIKNPIEA SVLLAEASLA bmy_03921T0/1-1130 IDKHEAVQFD MNWKVPAILY YIKRNLNSKY NLNIKNPIEA SVLLAEASLA BACU008135/1-1138 IDKHEAVQFD MNWKVPAILY YIKRNLNSKY NLNIKNPIEA SVLLAEASLA 951 1000 ENSTTRP00000006766/1-1199 RKQRKTHTTF IPLMLNEMPQ VGDLVGLDAE FVTLNEEEAE LRSDGTKSTI ENSP00000401721/1-1202 RKQRKTHTTF IPLMLNEMPQ IGDLVGLDAE FVTLNEEEAE LRSDGTKSTI ENSBTAP00000053637/1-1198 RKQRKTHTTF IPLMLNEMPQ VGDLVGLDAE FVTLNEEEAE LRSDGTKSTI bmy_03921T0/1-1130 RKQRKTHTTF IPLMLNEMPQ VGDLVGLDAE FVTLNEEEAE LRSDGTKSTI BACU008135/1-1138 RKQRKTHTTF IPLMLNEMPQ VGDLVGLDAE FVTLNEEEAE LRSDGTKSTI 1001 1050 ENSTTRP00000006766/1-1199 KPSQMSVARI TCVRGQGPNE GIPFIDDYIS TQEQVVDYLT QYSGIKPGDL ENSP00000401721/1-1202 KPSQMSVARI TCVRGQGPNE GIPFIDDYIS TQEQVVDYLT QYSGIKPGDL ENSBTAP00000053637/1-1198 KPSQMSVARI TCVRGQGPNE GIPFIDDYIS TQEQVVDYLT QYSGIKPGDL bmy_03921T0/1-1130 KPSQMSVARI TCVRGQGPNE GIPFIDDYIS TQEQVVDYLT QYSGIKPGDL BACU008135/1-1138 KPSQMSVARI TCVRGQGPNE GIPFIDDYIS TQEQVVDYLT QYSGIKPGDL 1051 1100 ENSTTRP00000006766/1-1199 DAKISSKHLT TLKSTYLKLR FLIDIGVKFV GHGLQKD-RV I-LMVPKDQV ENSP00000401721/1-1202 DAKISSKHLT TLKSTYLKLR FLIDIGVKFV GHGLQKDFRV INLMVPKDQV ENSBTAP00000053637/1-1198 DAKISSKHLT TLKSTYLKLR FLIDIGVKFV GHGLQKDFRV INLMVPKDQV bmy_03921T0/1-1130 DAKISSKHLT TLKSTYLKLR FLIDIGVKFV GHGLQKDFRV INLMVPKDQV BACU008135/1-1138 DAKISSKHLT TLKSTYLKLR FLIDIGVKFV GHGLQKDFRV INLMVPKDQV 1101 1150 ENSTTRP00000006766/1-1199 LDTVYLFHMP RKRMISLRFL AWYFLDLKIQ GETHDSIEDA RTALQLYRKY ENSP00000401721/1-1202 LDTVYLFHMP RKRMISLRFL AWYFLDLKIQ GETHDSIEDA RTALQLYRKY ENSBTAP00000053637/1-1198 LDTVYLFHMP RKRMISLRFL AWYFLDLKIQ GETHDSIEDA RTALQLYRKY bmy_03921T0/1-1130 LDTVYLFHMP RKRMISLRFL AWYFLDLKIQ GETHDSIEDA RTALQLYRKY BACU008135/1-1138 LDTVYLFHMP RKRMISLRFL AWYFLDLKIQ GETHDSIEDA RTALQLYRKY 1151 1200 ENSTTRP00000006766/1-1199 LELSKNGTEP ESFHKVLKGL YEKGRKMDWK VPEPEGQTSP KNAAVFSSVL ENSP00000401721/1-1202 LELSKNGTEP ESFHKVLKGL YEKGRKMDWK VPEPEGQTSP KNAAVFSSVL ENSBTAP00000053637/1-1198 LELSKNGTEP ESFHKVLKSL YEKGRKMDWK VPEPEGQTSP KNAAVFSSVL bmy_03921T0/1-1130 LELSKNGTEP ESFHKVLKGL YEKGRKMDWK VPEPEGQTSP KNAAVFSSVL BACU008135/1-1138 LELSKNGTEP ESFHKVLKGL YEKGRKMDWK VPEPEGQTSP KNAAVFSSVL 1201 1250 ENSTTRP00000006766/1-1199 AL ENSP00000401721/1-1202 AL ENSBTAP00000053637/1-1198 AL bmy_03921T0/1-1130 AL BACU008135/1-1138 AL