KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:07:45 2014 Check: 00 .. Name: ENSBTAP00000053642/1-1070 Len: 1578 Check: 7658 Weight: 1.00 Name: ENSTTRP00000008174/1-1072 Len: 1578 Check: 9226 Weight: 1.00 Name: bmy_16973T0/1-1167 Len: 1578 Check: 6925 Weight: 1.00 Name: BACU008671/1-1473 Len: 1578 Check: 3217 Weight: 1.00 // 1 50 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 LALGPGPKSD RTLSDPGRPS RPGRAVKPDP RRSWRRLGRA QPEPGPVGQR BACU008671/1-1473 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053642/1-1070 --------MP GEEEKRAFLE AREELASALR RDSGQAFTQE QLWPLLGTSL ENSTTRP00000008174/1-1072 --------MP GEEEERAFLA AREELASALR KDSGQAFSLE QLRPLLVTSL bmy_16973T0/1-1167 TGADSCLRMP GEEEERAFLA AREELASALR RDSGQAFSLE QLRPLLVTSL BACU008671/1-1473 --------MP GEEEERAFLA AREELASALR RDSGQAFSLE QLRQLLVTSL 101 150 ENSBTAP00000053642/1-1070 PPEARYLQLD AARLVRCNAH GEPRNYLNTL STALNILEKY GRNLLSPQRP ENSTTRP00000008174/1-1072 PPAARYLQLD AARLVRCNAH GEPRNYLNTL STALNILEKY GRNLLSPQRP bmy_16973T0/1-1167 PPAARYLQLD AARLVRCNAH GEPRNYLNTL STALNILEKY GRNLLSPQRP BACU008671/1-1473 PPAARYLQLD AARLVRCNAH GEPRNYLNTL STALNILEKY GRNLLSPQRP 151 200 ENSBTAP00000053642/1-1070 RYWRGVKFNN PVFRSTVDAV QGGRDVLRLY GYTEEQPDGL SFPERQEEPD ENSTTRP00000008174/1-1072 RYWRGVKFNN PVFRSTVDAV QGGRDVLRLY GYTEEQPDGL SFPEGQKEPD bmy_16973T0/1-1167 RYWRGVKFNN PVFRSTVDAV QGGRDVLRLY GYTEEQPDGL SFPEGQKEPD BACU008671/1-1473 RYWRGVKFNN PVFRSTVDAV QGGRDVLRLY GYTEEQPDGL SFPEGQKEPD 201 250 ENSBTAP00000053642/1-1070 QQQVATVTLE VLLLRTELNL LLQNAHPKPQ ALEQLLKDKV EDDLLQLSEF ENSTTRP00000008174/1-1072 EQQVATVTLE VLLLRTELSL LLQNTHPEPR ALEQLLKDKV EDDILQLSEF bmy_16973T0/1-1167 ERQVATVTLE VLLLRTELSL LLQNTHPEPQ TLEQLLKDKV EDDILQLSEF BACU008671/1-1473 ERQVATVTLE VLLLRTELSL LLQNTHPEPQ TLEQLLKDKV EDDILQLSEF 251 300 ENSBTAP00000053642/1-1070 APLLREIAPS PLTIPSAAGS TPAPCFLCGS APGTLHCSAC KQALCLTCDR ENSTTRP00000008174/1-1072 APLLREIDPG PLTTPSAPAS IPGPCFLCGS APGTLHCLAC KQGLCPTCDC bmy_16973T0/1-1167 APLLREIAPD PLTTPSAPAS IPGPCFLCGS APGTLHCSAC KQALCPTCDR BACU008671/1-1473 APLLREIAPD PLTTPSAPAS IPGPCFLCGS APGTLHCSAC KQALCPTCDR 301 350 ENSBTAP00000053642/1-1070 LFHGHPERAH HHRQTLHGAP QAVH--PSLP ASAPPRPQPA SGPTLGDSSF ENSTTRP00000008174/1-1072 LFHGHPDRAH HLRQTLPVAP QATHLTPNLP ASAPPQPQST SLPALGDSSV bmy_16973T0/1-1167 LFHGHPDRAH HLRQTLPGAP QATHLTPSLP ASAPPWPQST SLLALGDSSL BACU008671/1-1473 LFHGHPDRAH HLRQTLPGVP QATHLTSSLP ASAPPQPQST SLLALGDSSL 351 400 ENSBTAP00000053642/1-1070 SPPDPASARL LWPCSACALL NEPWAVLCVA CDRPRGCKGL GPGIEGPQGT ENSTTRP00000008174/1-1072 SSPDPASARL PWHCSACALL NEPWTVLCVA CDRPRGCKGL GLGIEGPQGA bmy_16973T0/1-1167 SSPDPASARL PWHCSACAML NEPWAVLCVA CDRPRGCKGL GLGIEGPQGA BACU008671/1-1473 SSPDPASARL PWHCSACAML NEPWAVLCVA CDRPRGCKGL GLGIEGPQGA 401 450 ENSBTAP00000053642/1-1070 GGLEPELSRG HWACQSCTFE NEAAAVLCAI CERPRLAQPP SLVVDSQDSG ENSTTRP00000008174/1-1072 GGVEPELARG HWACQSCTFE NEAVFVLCAM CERPRLAQPP SLVVDSQDAG bmy_16973T0/1-1167 GGLEPELARG HWACQSCTFE NEAAAVLCAI CERPRLAQPP SLVVDSQDAG BACU008671/1-1473 GGLEPELARG HWACQSCTFE NEAAAVLCAV CERPRLAQPP SLVVDSQDAG 451 500 ENSBTAP00000053642/1-1070 ICLKPLQQGD TVLSPVQTPA WYCIHCTFCN SGPGWVCAMC NRTSSPVPVQ ENSTTRP00000008174/1-1072 VCLQPLQQED TLLSSAQTPV WYCIHCTFCN SGPGWVCAMC NRTSSPNPVQ bmy_16973T0/1-1167 VCLQPLQQED TLLSSAQTPV WYCIHCTFCN SGPGWVCAMC NRTSSPIPVQ BACU008671/1-1473 VCLQPL---- ------QTPV WYCIHCTFCN SGPGWVCAMC NRTSSPIPIQ 501 550 ENSBTAP00000053642/1-1070 QTPQPHASSL EERHPEPGPP RPLHAPVTSS CGDLEKQRQD KMREEGLQLV ENSTTRP00000008174/1-1072 HTPQPLASSL EEQLPEPGPP RRLSAPLASS CGDLEKQRQD KMREEGLQLV bmy_16973T0/1-1167 RTPRPLASSL EERLPEPGPP RRLSAPLASS CGDLEKQRQD KMREEGLQLV BACU008671/1-1473 RTPRPLASSL EERLPEPGPP RRLSAPLASS CGDLEKQRQD KMREEGLQLV 551 600 ENSBTAP00000053642/1-1070 LKIREGEAGG ACPEEVFSAL QYSGTEVPLQ WLRSELPYVL EMVAELAGQQ ENSTTRP00000008174/1-1072 LKIREGEAGG ACPEEVFSAL QYSGTEVPLQ WLRSELPYVL EMVAELAGQQ bmy_16973T0/1-1167 LKIREGEAGG ACPEEVFSAL QYSGTEVPLQ WLRSELPYVL EMVAELAGQQ BACU008671/1-1473 LKIREGEAGG ACPEEVFSAL QYSGTEVPLQ WLRSELPYVL EMVAELAGQQ 601 650 ENSBTAP00000053642/1-1070 DPGLGAFSCQ EARKAWLDRH GNLDEAVEEC VRTRRRKVQE LRSLGFEPEE ENSTTRP00000008174/1-1072 DQRLGAFSCQ EARNAWLDRH GNLDEAVKEC VRARRRKVQE LRSLGFEPEE bmy_16973T0/1-1167 DPRLGAFSCQ EARNAWLDRH GNLDEAVEEC VRARRRKVQE LRSLGFEPEE BACU008671/1-1473 DPRLGAFSCQ EARNAWLDRH GNLDEAVEEC VRARRRKVQE LRSLGFEPEE 651 700 ENSBTAP00000053642/1-1070 GSLQALFQHG GDVARALTEL QRQRLEPFHQ RLWDSGPEPT PSWDGPDKQS ENSTTRP00000008174/1-1072 GSLHALFQHG GDVARALTEL QRQRLEPFHQ RLWDSGPEPT PSWDGPDKQS bmy_16973T0/1-1167 GSLQALFQHG GDVARALTEL QRQRLEPFHQ RLWDSGPEPT PSWDGPDKQS BACU008671/1-1473 GSLQALFQHG GDVARALTEL QRQRLEPFHQ RLWDSGPEPT PSWDGPDKQS 701 750 ENSBTAP00000053642/1-1070 LVRRLLAVHS LPSWGRAELA LALLQETPRN YELGDVVEAV RQSQDRAFLR ENSTTRP00000008174/1-1072 LVRRLLAVHA LPSWGRAELA LALLQETPRN YELGDVVEAV RQSQDRAFLR bmy_16973T0/1-1167 LVRRLLAVHA LPSWGRAELA LALLQETPRN YELGDVVEAV RQSQDRAFLR BACU008671/1-1473 LVRRLLAVHA LPSWGRAELA LALLQETPRN YELGDVVEAV RQSQDRAFLR 751 800 ENSBTAP00000053642/1-1070 RLLAQECAVC SWVLPRNRMQ SLTSCECTIC PDCFRQHFTI ALKEKHITDM ENSTTRP00000008174/1-1072 RLLAQECAVC SWALPRNRMQ ALTSCECTIC PDCFRQHFTI ALKEKHITDM bmy_16973T0/1-1167 RLLAQECAVC SWALPRNRMQ ALTSCECTIC PDCFRQHFTI ALKEKHITDM BACU008671/1-1473 RLLAQECAVC SWALPRNRMQ ALTSCECTIC PDCFRQHFTI ALKEKHITDM 801 850 ENSBTAP00000053642/1-1070 ACPGCGRPDL TDDTQLLGYF STLDIQLRES LEPDAYALFH KKLTEGVLMR ENSTTRP00000008174/1-1072 VCPACGRPDL TDDAQLLSYF STLDIQLRES LXXXXXXXXX XXXXXXXXXX bmy_16973T0/1-1167 VCPACGRPDL TDDAQLLSYF STLDIQLRES LEPDAYALFH KKLTEGVLMR BACU008671/1-1473 VCPACGRPDL TDDAQLLSYF STLDIQLRES LEPDAYALFH KKLTEGVLMR 851 900 ENSBTAP00000053642/1-1070 DPKFLWCAQC SFGFIYEREQ LEATCPQCQQ TFCVRCKRQW EEQHRGRSCE ENSTTRP00000008174/1-1072 XXXXXXXXXX XXXXXXXXXX XXXTCPQCHQ TFCVRCKRQW EEQHRGRSCE bmy_16973T0/1-1167 DPKFLWCAQC SFGFIYEREQ LEATCPQCHQ TFCVRCKRQW EEQHRGRSCE BACU008671/1-1473 DPKFLWCAQC SFGFIYEREQ LEATCPQCHQ TFCVRCKRQW EEQHRGRSCE 901 950 ENSBTAP00000053642/1-1070 DFQNWKRTND PEYQAQGLAM YLQENGIDCP KCKFSYALAR GGCMHFHCTQ ENSTTRP00000008174/1-1072 DFQNWKRTND PEYQAQGLAM YLQENGIDCP KCKFSYALAR GGCMHFHCTQ bmy_16973T0/1-1167 DFQNWKRTND PEYQAQGLAM YLQENGIDCP KCKFSYALAR GGCMHFHCTQ BACU008671/1-1473 DFQNWKRTND PEYQAQGLAM YLQENGIDCP KCKFSYALAR GGCMHFHCTQ 951 1000 ENSBTAP00000053642/1-1070 CRHQFCSGCY SAFYAKN--- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 CRHQFCSGCY NAFYAKN--- ---------- ---------- ---------- bmy_16973T0/1-1167 CRHQFCSGCY NAFYAKNTLQ CLISPTPTPL TQGFLRGQDP NSLQLPLSHL BACU008671/1-1473 CRHQFCSGCY NAFYAKN--- ---------- ---------- ---------- 1001 1050 ENSBTAP00000053642/1-1070 ----KCPDPN CRVKKSLHGH HPRDCLFYLR DWSAVRLQKL LQDNNVMFNT ENSTTRP00000008174/1-1072 ----KCPDPN CRVKKSLHGH HPRDCLFYLR DWTAPRLQKL LQDNNVMFNT bmy_16973T0/1-1167 GFRQKCPDPN CRVKKSLHGH HPRDCLFYLR DWTALRLQKL LQDNNVMFNT BACU008671/1-1473 ----KCPDPN CRVKKSLHGH HPRDCLFYLR DWTALRLQKL LQDNNVMFNT 1051 1100 ENSBTAP00000053642/1-1070 EPPVGARAVP GGGCRVMEQK EVPNGFRDEA CGKETPAGYA GLCQAHYKEY ENSTTRP00000008174/1-1072 EPPAGARAVP GGGCRVMEQK EVPNGFRDEA CGKETPAGYA GLCQAHYKEY bmy_16973T0/1-1167 EPPAGARAVP GGGCRVMEQK EVPDGFRDEA CGKETPAGYA GLCQAHYKEY BACU008671/1-1473 EPPAGARAVP GGGCRVMEQK EVPDGFRDEA CGKETPAGYA GLCQAHYKEY 1101 1150 ENSBTAP00000053642/1-1070 LVSLINAHSL DPATLYELEE LETAAERYLH VRPQALPGED APTYHARLLQ ENSTTRP00000008174/1-1072 LVSLINAHSL DPASLYEVEE LETAAERYLH VRPQPLPGED AATYHARLLQ bmy_16973T0/1-1167 LVSLINAHSL DPATLYEVEE LETAAERYLH VRPQPLPGED AATYHARLLQ BACU008671/1-1473 LVSLINAHSL DPATLYEVEE LETAAERYLH VRPQPLPGED AATYHARLLQ 1151 1200 ENSBTAP00000053642/1-1070 KLIEEVPLGQ SIPRRRK--- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 KLIEEVPLGQ SIPRRRK--- ---------- ---------- ---------- bmy_16973T0/1-1167 KLIEEVPLGQ SIPRRRK--- ---------- ---------- ---------- BACU008671/1-1473 KLIEEVPLGQ SIPRRRKMAS GRARCTRKLR SWVVEQVESG QFPGVCWEDA 1201 1250 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 AKTMFRIPWK HAGKQDFRED QDAAFFKAWA IFKGKYKDGD SEGPAIWKTR 1251 1300 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 LRCALNKSSE FQEVPENGHR DGAEPYKVYR LLPPGTLPAQ PGTQKSLSKR 1301 1350 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 HHSSVSSERK EDEVTTKNCI LSPSLLQDPL KNELVETSGG AAYSDSGSSS 1351 1400 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 SGNSPEPQEG RDTAEAPLQG DLVSPELLPP PGSDYSLLLT FIYDGRVVGE 1401 1450 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 AQVQSLDCRL VAEPSSTQYG MEQVIFPKPG PREPTQRLLS QLKRGVLVAS 1451 1500 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 NSRGLFVQRL CPIPISWNAP QAPPGPGPHL LPSNKCVELF RTAYFCRDLA 1501 1550 ENSBTAP00000053642/1-1070 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008174/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_16973T0/1-1167 ---------- ---------- ---------- ---------- ---------- BACU008671/1-1473 RYFQGLGPAP EFQVTLNFWE ESPGPNHTPQ SLITVQMEQA FARHLLEKTP 1551 1600 ENSBTAP00000053642/1-1070 ---------- ---------- -------- ENSTTRP00000008174/1-1072 ---------- ---------- -------- bmy_16973T0/1-1167 ---------- ---------- -------- BACU008671/1-1473 EDQAAILSLV QSVEDPASFS SLCSSYLL