KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:46 2014 Check: 00 .. Name: ENSTTRP00000016279/1-855 Len: 895 Check: 9120 Weight: 1.00 Name: ENSP00000448689/1-892 Len: 895 Check: 8877 Weight: 1.00 Name: ENSBTAP00000053643/1-895 Len: 895 Check: 6844 Weight: 1.00 Name: bmy_04688T0/1-871 Len: 895 Check: 7312 Weight: 1.00 Name: BACU008079/1-893 Len: 895 Check: 1807 Weight: 1.00 // 1 50 ENSTTRP00000016279/1-855 MACLHETRTP SPSFGGFVST LSEASMRKLD PDTSDCTPEK DLTPTH---- ENSP00000448689/1-892 MACLHETRTP SPSFGGFVST LSEASMRKLD PDTSDCTPEK DLTPTQCVLR ENSBTAP00000053643/1-895 MACLHETRTP SPSFGGFVST LSEASMRKLD PDTSDCTPEK DLTPTQCVLR bmy_04688T0/1-871 MACLHETRTP SPSFGGFVST LSEASMRKLD PDTSDCTPEK DLTPTQCVLR BACU008079/1-893 MACLHETRTP SPSFGGFVST LSEASMRKLD PDTSDCTPEK DLTPTQCVLR 51 100 ENSTTRP00000016279/1-855 ---------- ---------- ---------V LQLHEQDAGG PGGATGSPES ENSP00000448689/1-892 DVVPLGGQGG GGPSPSPGGE PPPEPFANSV LQLHEQDAGG PGGAAGSPES ENSBTAP00000053643/1-895 DVVPLGGQGG GGPSPSPGGE PPPEPFANSV LQLHEQDAGG PGGATGSPES bmy_04688T0/1-871 DVVPLVGQGG GGPSPSPGGE PPPEPFANSV LQLHEQDAGG PGGATGSPES BACU008079/1-893 DVVPLGGQGR GGPSPSPGGE PPPEPFANSV LQLHEQDAGG PGGATGSPES 101 150 ENSTTRP00000016279/1-855 RASRVRADEV RLQCQSGSGF LEGLFGCLRP VWTMIGKAYS TEHKQQQEDL ENSP00000448689/1-892 RASRVRADEV RLQCQSGSGF LEGLFGCLRP VWTMIGKAYS TEHKQQQEDL ENSBTAP00000053643/1-895 RASRVRADEV RLQCQSGSGF LEGLFGCLRP VWTMIGKAYS TEHKQQQEDL bmy_04688T0/1-871 RASRVRADEV RLQCQSGSGF LEGLFGCLRP VWTMIGKAYS TEHKQQQEDL BACU008079/1-893 RASRVRADEV RLQCQSGSGF LEGLFGCLRP VWTMIGKAYS TEHKQQQEDL 151 200 ENSTTRP00000016279/1-855 WEVPFEEILD LQWVGSGAQG AVFLGRFHGE EVAVKKVRDL KETDIKHLRK ENSP00000448689/1-892 WEVPFEEILD LQWVGSGAQG AVFLGRFHGE EVAVKKVRDL KETDIKHLRK ENSBTAP00000053643/1-895 WEVPFEEILD LQWVGSGAQG AVFLGRFHGE EVAVKKVRDL KETDIKHLRK bmy_04688T0/1-871 WEVPFEEILD LQWVGSGAQG AVFLGRFHGE EVAVKKVRDL KETDIKHLRK BACU008079/1-893 WEVPFEEILD LQWVGSGAQG AVFLGRFHGE EVAVKKVRDL KETDIKHLRK 201 250 ENSTTRP00000016279/1-855 LKHPNIITFK GVCTQAPCYC ILMEFCAQGQ LYEVLRAGRP VTPSLLVDWS ENSP00000448689/1-892 LKHPNIITFK GVCTQAPCYC ILMEFCAQGQ LYEVLRAGRP VTPSLLVDWS ENSBTAP00000053643/1-895 LKHPNIITFK GVCTQAPCYC ILMEFCAQGQ LYEVLRAGRP VTPSLLVDWS bmy_04688T0/1-871 LKHPNIITFK GVCTQAPCYC ILMEFCAQGQ LYEVLRAGRP VTPSLLVDWS BACU008079/1-893 LKHPNIITFK GVCTQAPCYC ILMEFCAQGQ LYEVLRAGRP VTPSLLVDWS 251 300 ENSTTRP00000016279/1-855 MGIAGGMNYL HLHKIIHRDL KSPNMLITYD DVVKISDFGT SKELSDKSTK ENSP00000448689/1-892 MGIAGGMNYL HLHKIIHRDL KSPNMLITYD DVVKISDFGT SKELSDKSTK ENSBTAP00000053643/1-895 MGIAGGMNYL HLHKIIHRDL KSPNMLITYD DVVKISDFGT SKELSDKSTK bmy_04688T0/1-871 MGIAGGMNYL HLHKIIHRDL KSPNMLITYD DVVKISDFGT SKELSDKSTK BACU008079/1-893 MGIAGGMNYL HLHKIIHRDL KSPNMLITYD DVVKISDFGT SKELSDKSTK 301 350 ENSTTRP00000016279/1-855 MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE IPYKDVDSSA ENSP00000448689/1-892 MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE IPYKDVDSSA ENSBTAP00000053643/1-895 MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE IPYKDVDSSA bmy_04688T0/1-871 MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE IPYKDVDSSA BACU008079/1-893 MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE IPYKDVDSSA 351 400 ENSTTRP00000016279/1-855 IIWGVGSNSL HLPVPSSCPD GFKILLRQCW NSKPRNRPSF RQILLHLDIA ENSP00000448689/1-892 IIWGVGSNSL HLPVPSSCPD GFKILLRQCW NSKPRNRPSF RQILLHLDIA ENSBTAP00000053643/1-895 IIWGVGSNSL HLPVPSSCPD GFKILLRQCW NSKPRNRPSF RQILLHLDIA bmy_04688T0/1-871 IIWGVGSNSL HLPVPSSCPD GFKILLRQCW NSKPRNRPSF RQILLHLDIA BACU008079/1-893 IIWGVGSNSL HLPVPSSCPD GFKILLRQCW NSKPRNRPSF RQILLHLDIA 401 450 ENSTTRP00000016279/1-855 SADVLSTPQE TYFKSQAEWR EEVKLHFEKI KSEGTCLHRL EEELVMRRRE ENSP00000448689/1-892 SADVLSTPQE TYFKSQAEWR EEVKLHFEKI KSEGTCLHRL EEELVMRRRE ENSBTAP00000053643/1-895 SADVLSTPQE TYFKSQAEWR EEVKLHFEKI KSEGTCLHRL EEELVMRRRE bmy_04688T0/1-871 SADVLSTPQE TYFKSQAEWR EEVKLHFEKI KSEGTCLHRL EEELVMRRRE BACU008079/1-893 SADVLSTPQE TYFKSQAEWR EEVKLHFEKI KSEGTCLHRL EEELVMRRRE 451 500 ENSTTRP00000016279/1-855 ELRHALDIRE HYERKLERAN NLYMELNALM LQLELK-REL LRREQALERR ENSP00000448689/1-892 ELRHALDIRE HYERKLERAN NLYMELNALM LQLELKEREL LRREQALERR ENSBTAP00000053643/1-895 ELRHALDIRE HYERKLERAN NLYMELNALM LQLELKEREL LRREQALERR bmy_04688T0/1-871 ELRHALDIRE HYERKLERAN NLYMELNALM LQLELKEREL LRREQALERR BACU008079/1-893 ELRHALDIRE HYERKLERAN NLYMELNALM LQLELKEREL LRREQALERR 501 550 ENSTTRP00000016279/1-855 CPGLLKSHPS RGLLHGNTME KLIKKRNVPQ KLSPHSKRPD ILKTESLLPK ENSP00000448689/1-892 CPGLLKPHPS RGLLHGNTME KLIKKRNVPQ KLSPHSKRPD ILKTESLLPK ENSBTAP00000053643/1-895 CPGLLKSHPS RGLLHGNTME KLIKKRNVPQ KLSPHSKRPD ILKTESLLPK bmy_04688T0/1-871 CPGLLKSHPS RGLLHGNTME KLIKKRNVPQ KLSPHSKRPD ILKTESLLPK BACU008079/1-893 CPGLLKSHPS RGLLHGNTME KLIKKRNVPQ KLSPHSKRPD ILKTESLLPK 551 600 ENSTTRP00000016279/1-855 LDAALSGVGL PGCAKGPPSP GRSRRGKTRH RKASAKGSCG DLPGLRAVVP ENSP00000448689/1-892 LDAALSGVGL PGCPKGPPSP GRSRRGKTRH RKASAKGSCG DLPGLRTAVP ENSBTAP00000053643/1-895 LDAALSGVGL PGCAKGPPSP GRSRRGKTRH RKASAKGSCG DLPGLRAAVP bmy_04688T0/1-871 LDAALSGVGL PGCAKGPPSP GRSRRGKTRH RKASAKGSCG DLPGLRAVVP BACU008079/1-893 LDAALSGVGL PGCAKGPPSP GRSRRGKTRH RKASAKGSCG DLPGLRAVVP 601 650 ENSTTRP00000016279/1-855 PHEPGGPGSP VGLGGGPSAW EACPPALRGL HHDLLLRKMS SSSPDLLSAA ENSP00000448689/1-892 PHEPGGPGSP GGLGGGPSAW EACPPALRGL HHDLLLRKMS SSSPDLLSAA ENSBTAP00000053643/1-895 PHEPGGPGSP VGLGGGPSAW EACPPALRGL HHDLLLRKMS SSSPDLLSAA bmy_04688T0/1-871 PHEPGGPGSP VGPGGGPSAW EACPPALRGL HHDLLLRKMS SSSPDLLSAA BACU008079/1-893 PHEPGGPGSP VGPGGGPSAW EACPPALRGL HHDLLLRKMS SSSPDLLSAA 651 700 ENSTTRP00000016279/1-855 LGARGRGATG GAGDPGSPPP ARGDTPPSEG SAPGSTSPDS PGGAKGEPPP ENSP00000448689/1-892 LGSRGRGATG GAGDPGSPPP ARGDTPPSEG SAPGSTSPDS PGGAKGEPPP ENSBTAP00000053643/1-895 LGARGRGATG GAGDPGSPPP ARGDTPPSEG SAPGSTSPDS PGGAKGEPPP bmy_04688T0/1-871 LGARVRGATG GAGDPGSPPP ARGDTPPSEG SAPGSTSPDS PGGAKGEPPP BACU008079/1-893 LGARVRGATG GAGDPGSPPP ARGDTPPSEG SAPGSTSPDS PGGAKGEPPP 701 750 ENSTTRP00000016279/1-855 PVGPGDGVGL LGTGREGTAG RGGSRAGSQH LTPAALLYRA AVTRSQXXXX ENSP00000448689/1-892 PVGPGEGVGL LGTGREGTSG RGGSRAGSQH LTPAALLYRA AVTRSQKRGI ENSBTAP00000053643/1-895 PVGPGDSVGL LGTGREGTAG RGGSRAGSQH LTPAALLYRA AVTRSQKRGI bmy_04688T0/1-871 PVGPGDGXGL LGTGREGTAG RGGSRAGSQH LTPAALLYRA AVTRSQKRGI BACU008079/1-893 PVGPGDGVGL LGTGREGTAG RGGSRAGSQH LTPAALLYRA AVTRSQKRGI 751 800 ENSTTRP00000016279/1-855 XXXXXXXXXX XXXXXXXXX- -XWSQ-LNMR QSLS--SSEN PSDGEEGTAS ENSP00000448689/1-892 SSEEEEGEVD SEVELTSSQ- -RWPQSLNMR QSLSTFSSEN PSDGEEGTAS ENSBTAP00000053643/1-895 SSEEEEGEVD SEVELASSQR NRWPQGLKMR QSLSTFSSEN PSDGEEGTAS bmy_04688T0/1-871 SSEEEEGEVD SEVELTSSQ- -RWSQGLNMR QSLSTFSSEN PSDGEEGTAS BACU008079/1-893 SSEEEEGEVD SEVELTSSQ- -RWSQGLKMR QSLSTFSSEN PSDGEEGTAS 801 850 ENSTTRP00000016279/1-855 EPSPSGT-EV GSTNTDERPD ERSDDMCSQG SEIPLDPPSS EVVTGREPSS ENSP00000448689/1-892 EPSPSGTPEV GSTNTDERPD ERSDDMCSQG SEIPLDPPPS EVIPGPEPSS ENSBTAP00000053643/1-895 EPSPSGTPEV GSTNTDERPD ERSDDMCSQG SEIPLDPPAS EVVTGPEPSS bmy_04688T0/1-871 EPSPSGTPEV GSTNTDERPD ERSDDMCSQG SEIPLDPPSS EVVTGREPSS BACU008079/1-893 EPSPSGTPEV GSTNTDERPD ERSDDMCSQG SEIPLDPPSS EVVTGREPSS 851 900 ENSTTRP00000016279/1-855 LPIPHHNLLR GEQGPPNSED SDCDSTELEN ANSGEALRPP ASLPP ENSP00000448689/1-892 LPIPHQELLR -ERGPPNSED SDCDSTELDN SNSVDALRPP ASLPP ENSBTAP00000053643/1-895 LPVPHHDLLR GEQGPPNPED SDCDSTELDN ANSGEALRPP ASLPP bmy_04688T0/1-871 LPIPHHNLLR GEQGPPNSED SRL------- ---------- ----- BACU008079/1-893 LPIPHHNLLR GEQGPPNSED SDCDSTELEN ANSGEALRPP ASLPP