KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:50 2014 Check: 00 .. Name: ENSTTRP00000012300/1-990 Len: 992 Check: 5321 Weight: 1.00 Name: ENSP00000379441/1-988 Len: 992 Check: 1321 Weight: 1.00 Name: ENSBTAP00000053648/1-991 Len: 992 Check: 639 Weight: 1.00 Name: bmy_16197T0/1-555 Len: 992 Check: 5794 Weight: 1.00 Name: BACU006165/1-860 Len: 992 Check: 2666 Weight: 1.00 // 1 50 ENSTTRP00000012300/1-990 MSFALXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000379441/1-988 MSFALEETLE SDWVAVRPHV FDEREKHKFV FIVAWNEIEG KFAITCHNRT ENSBTAP00000053648/1-991 MSFALEETVE SDWVAVRPHV FDEREKHKFV FIVAWNEIEG KFAITCHNRT bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012300/1-990 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000379441/1-988 AQRQRSGSRE QAGARGGAEA GGAASDGSRG PGSPAGRGRP EATASATLVR ENSBTAP00000053648/1-991 AQRQRSGTRD QAGARGGAES GALASDGTRG PGSPAGKGRP EATASATLGR bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012300/1-990 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000379441/1-988 SPGPRRSSAW AEGGSPRSTR SLLGDPRLRS PGSKGAESRL RSPVRAKPIP ENSBTAP00000053648/1-991 SPGSRRRPAW PEGSSPRSAC SLRGDPPLRS PAGKGAESPL RSPVRANPSP bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 ---------- ---------- ---------M SAGKGAESPL RSPVRANSSP 151 200 ENSTTRP00000012300/1-990 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXGTVT REKKVLAILR ENSP00000379441/1-988 GQKTSEADDA AGAAAAAARP APREAQVSSV RIVSASGTVS EEIEVLEMVK ENSBTAP00000053648/1-991 VRRASGGRDV AGSAAAAAPP AAKEAPM-SV RVVSACGTVT EEIEVLEMVR bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 VRRTSGGRDV AGAAAAAAPP APKEAPVSSV RVVSACGTVT EEIEVLEMVR 201 250 ENSTTRP00000012300/1-990 EDEMVPAAMA FSDDEQPQPA AELESPAEEC SWAGLFSFQD LRAVHQQLCS ENSP00000379441/1-988 EDE---APLA LSDAEQPPPA TELESPAEEC SWAGLFSFQD LRAVHQQLCS ENSBTAP00000053648/1-991 EDEVDPAALA LSAAEQPPAA AELESPAEEC SWAGLFSFQD LRAVHQQLCS bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 EDEADPAALA LSDAEQPQPA AELESPAEEC SWAGLFSFQD LRAVHQQLCS 251 300 ENSTTRP00000012300/1-990 VNSQLEPCLP VFPEEPSGMW TVLFGGAPEM TEQEIDTLCY QLQVYLGHGL ENSP00000379441/1-988 VNSQLEPCLP VFPEEPSGMW TVLFGGAPEM TEQEIDTLCY QLQVYLGHGL ENSBTAP00000053648/1-991 VNSQLEPCLP VFPEEPSGMW TVLFGGAPEM SEQEIDTLCY QLQIYLGHGL bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 VNSQLEPCLP VFPEEPSGMW TVLFGGAPEM TEQEIDTLCY QLQVYLGHGL 301 350 ENSTTRP00000012300/1-990 DTCGWKILSQ VLFTETDDPE EYYESLSELR QKGYEEVLQR ARKRIQELLD ENSP00000379441/1-988 DTCGWKILSQ VLFTETDDPE EYYESLSELR QKGYEEVLQR ARKRIQELLD ENSBTAP00000053648/1-991 DTCGWKILSQ VLFTETDDPE EYYESLSELR QKGYEEVLQR ARKRIQELLD bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 DTCGWKILSQ VLFTETDDPE EYYESLSELR QKGYEEVLQR ARKRIQELLD 351 400 ENSTTRP00000012300/1-990 KHKNTESMVE LLDLYQMEDE AYSSLAEATT ELYQYLLQPF RDMRELAMLR ENSP00000379441/1-988 KHKNTESMVE LLDLYQMEDE AYSSLAEATT ELYQYLLQPF RDMRELAMLR ENSBTAP00000053648/1-991 KHKNTESMVE LLDLYQMEDE AYSSLAEATT ELYQYLLQPF RDMRELAMLR bmy_16197T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006165/1-860 KHKNTESMVE LLDLYQMEDE AYSSLAEATT ELYQYLLQPF RDMRELAMLR 401 450 ENSTTRP00000012300/1-990 RQQIKISIEN DYLGPRRIES LQKEDADWQR KAHMAVLSIQ DLTVKYFEIT ENSP00000379441/1-988 RQQIKISMEN DYLGPRRIES LQKEDADWQR KAHMAVLSIQ DLTVKYFEIT ENSBTAP00000053648/1-991 RQQIKISMEN DYLGPRRIES LQKEDADWQR KAHMAVLSIQ DLTVKYFEIT bmy_16197T0/1-555 ---------- ---------- ---------- ---MAVLSIQ DLTVKYFEIT BACU006165/1-860 RQQIKISIEN DYLGPRRIES LQKEDADWQR KAHMAVLSIQ DLTVKYFEIT 451 500 ENSTTRP00000012300/1-990 AKAQKAVYDR MRADQKKFGK ASWAAAAERM EKLQYAVSKE TLQMMRAKEI ENSP00000379441/1-988 AKAQKAVYDR MRADQKKFGK ASWAAAAERM EKLQYAVSKE TLQMMRAKEI ENSBTAP00000053648/1-991 AKAQKAVYDR MRADQKKFGK ASWAAAAERM EKLQYAVSKE TLQMMRAKEI bmy_16197T0/1-555 AKAQKAVYDR MRADQKKFGK ASWAAAAERM EKLQYAVSKE TLQMMRAKEI BACU006165/1-860 AKAQKAVYDR MRADQKKFGK ASWAAAAERM EKLQYAVSKE TLQMMRAKEI 501 550 ENSTTRP00000012300/1-990 CLEQRKHALK EEMQSLQGGT EAIAQLDQLE ADYYDLQLQL YEVQFEILKC ENSP00000379441/1-988 CLEQRKHALK EEMQSLRGGT EAIARLDQLE ADYYDLQLQL YEVQFEILKC ENSBTAP00000053648/1-991 CLEQKKHALK EEMQSLQGGT EAIARLDQLE GDYYDLQLQL YEVQFEILKC bmy_16197T0/1-555 CLEQRKHALK EEMQSLQGGT EAIAQLDQLE ADYYDLQLHL YEVQFEILKC BACU006165/1-860 CLEQRKHALK EEMQSLQGGT EAIAQLDQLE ADYYDLQLQL YEVQFEILKC 551 600 ENSTTRP00000012300/1-990 EELLLTAQLE SIKRLISEKR DEVVYYDTYE SMEAMLEKEE MAVSVHLQRE ENSP00000379441/1-988 EELLLTAQLE SIKRLISEKR DEVVYYDTYE SMEAMLEKEE MAASAYLQRE ENSBTAP00000053648/1-991 EELLLTAQLE SIKRLISEKR DEVVYYDTYE SMEAMLEKEE MAASMHFQRE bmy_16197T0/1-555 EELLLTAQLE SIKRLISEKR DEVVYYDTYE SMEAMLEKEE MAASVHLQRE BACU006165/1-860 EELLLTAQLE SIKRLISEKR DEVVYYDTYE SMEAMLEKEE MAASVHLQRE 601 650 ENSTTRP00000012300/1-990 ELQKLQQKAR QLEARRGRVS AKKAYLRNKK EICIAKHNEK FQQRLRSEDE ENSP00000379441/1-988 ELQKLQQKAR QLEARRGRVS AKKSYLRNKK EICIAKHNEK IQQRTRIEDE ENSBTAP00000053648/1-991 ELQKLQQKAR QLEARRGRVS AKKAYLRNKK EICIAKHNEK FQQRLRSEDE bmy_16197T0/1-555 ELQKLQQKAR QLEARRGRVS AKKAYLRNKK EICIAKHKEK FQQRLRSEDE BACU006165/1-860 ELQKLQQKAR QLEARRGRVS AKKAYLRNKK EICIAKHKEK FQQRLRSEDE 651 700 ENSTTRP00000012300/1-990 YRTHHTVQLK REKLHDEEER KSAWVSQERQ RTLDRLRTFK QRYPGQVILK ENSP00000379441/1-988 YRTHHTVQLK REKLHDEEER KSAWVSQERQ RTLDRLRTFK QRYPGQVILK ENSBTAP00000053648/1-991 YRTHHTVQLK RDKLHDEEER KSAWVSQERQ KTLDRLRNFK QRYPGQVILK bmy_16197T0/1-555 YRTHHTVQLK REKLHDEEER KSAWVSQERQ RTLDRLRTFK QRYPGQVILK BACU006165/1-860 YRTHHTVQLK REKLHDEEER KSAWVSQERQ RTLDRLRTFK QRYPGQVILK 701 750 ENSTTRP00000012300/1-990 STRLRLAHAR RRSAASPVSC EDQCDPLPGA LQVEEKSEGV EEGRGKLGSS ENSP00000379441/1-988 STRLRLAHAR RKGAASPVLQ EDHCDSLPSV LQVEEKTEEV GEGRVKRGPS ENSBTAP00000053648/1-991 STRLRLAHAR RRSTASPVSC EDQCDSLPGV LQVEEKREGL DEGKAKLGSS bmy_16197T0/1-555 STRLRLAHAR R-SAASPVSC EDQCDPLPGA LQVEEKSEGV EEGRGKLGSS BACU006165/1-860 STRLRLAHAR RRSAASPVSC EDQCDPLPGA LQVEEKSEGV EEGRGKLRSS 751 800 ENSTTRP00000012300/1-990 QTTEAQSLTQ LEDNSSAQLE ATSLPPGGVT SEPPPAASXX XXXXXXXXXX ENSP00000379441/1-988 QTTEPQSLVQ LEDTSLTQLE ATSLPLSGVT SELPPTISLP LLNN-NLEPC ENSBTAP00000053648/1-991 QAADAQSLTL PEGHPSAQLE ATSSLPSGFT ADLPPPVSCP LLNTVDCKAG bmy_16197T0/1-555 QTTEAQNLTQ LEDNSSAQLE ATLLPPGGVT SELPPAVSPP LLSKIDPKPG BACU006165/1-860 QTTEALNLTQ LEDNSSAQLE ATLLPPGGVT SELPPALSPP LLSKIDPKPG 801 850 ENSTTRP00000012300/1-990 XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000379441/1-988 SVTINPLPSP LPPTPPPPPP PPPPPPPPPL PVAKDSGPET LEKDLPRKEG ENSBTAP00000053648/1-991 SVPAGPLPPP LPPTPPPPPP PPPPPPPPPL PVGQDSAPET LEKGLPQMEG bmy_16197T0/1-555 SATADPLPPP LPPA--PPPP PPPPPPPPPL PVGKDGAPET LEKGLPRVEG BACU006165/1-860 SATADPLPPP LPPA--PPPP PPPPPPPPPL PVGKDGAPET LEKGLPRVEG 851 900 ENSTTRP00000012300/1-990 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XSSPMDEVLA ENSP00000379441/1-988 NEKRIPKSAS APSAHLFDSS QLVSARKKLR KTAEGLQRRR VSSPMDEVLA ENSBTAP00000053648/1-991 SEKRIPKSAS APSAHLFDSS QLVSARKKLR KTAEGLQRRR VSSPMDEVLA bmy_16197T0/1-555 NEKRIPKSAS APSAHLFDSS QLVSARKKLK KTAEGLQRKR VSSPMDEVLA BACU006165/1-860 NEKRIPKSAS APSAHLFDSS QLVSARKKLK KTAEGLQRKR VSSPMDEVLA 901 950 ENSTTRP00000012300/1-990 SLKRGSFHLR KVEQRTLPPF PDEDD-NNIL AQIRKGVKLK KVQKEVLRES ENSP00000379441/1-988 SLKRGSFHLK KVEQRTLPPF PDEDDSNNIL AQIRKGVKLK KVQKDVLRES ENSBTAP00000053648/1-991 SLKRGSFHLK KVEQRTLPPF PDEDDSNNIL AQIRKGVKLK KVQKEVLRES bmy_16197T0/1-555 SLKRGSFHLR KVEQRTLPPF PDEDD-NNIL AQIRKGVKLK KVQKEVLRES BACU006165/1-860 SLKRGSFHLR KVEQRTLPPF PDEDD-NNIL AQIRKGVKLK KVQKEVLRES 951 1000 ENSTTRP00000012300/1-990 FTLLPDTDPL TRSIHEALRR IKEASPESED DEEALPCTDW EN ENSP00000379441/1-988 FTLLPDTDPL TRSIHEALRR IKEASPESED EEEALPCTDW EN ENSBTAP00000053648/1-991 FTLLPDTDPL TRSIHEALRR IKEASPESED EEEALPCTDW EN bmy_16197T0/1-555 FTLLPDTDPL TRSIHEALRR IKEASPESED EEEALPCTDW EN BACU006165/1-860 FTLLPDTDPL TRSIHEALRR IKEASPESED EEEALPCTDW EN