KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:20:56 2014 Check: 00 .. Name: ENSP00000305839/1-1008 Len: 1024 Check: 2878 Weight: 1.00 Name: ENSBTAP00000053673/1-963 Len: 1024 Check: 1849 Weight: 1.00 Name: bmy_08395T0/1-788 Len: 1024 Check: 1420 Weight: 1.00 Name: ENSTTRP00000013306/1-963 Len: 1024 Check: 6998 Weight: 1.00 // 1 50 ENSP00000305839/1-1008 MDTAEDPAWL QLLQKDSSPP GPRPTAFFCP QDGSLGAGSS AMRDYCPSQQ ENSBTAP00000053673/1-963 LGSAEDPAWL QLLRKDSSPP GPQPTAFCCP QDGSLGAGSQ AMRDCCPSQQ bmy_08395T0/1-788 ---------- ---------- ---------- ---------- -MRDCCPSQQ ENSTTRP00000013306/1-963 -GSAEDPAWL QLL-KDSSPP GPQPTALCC- QDGSLGAGSL TMRDCCPSQQ 51 100 ENSP00000305839/1-1008 KASPAPPRHT PDQSPGMESR HRSPSGAGEG ASCSDGPRGS LACPSPTCFS ENSBTAP00000053673/1-963 KAIPTHPRLT PAQSPSMDSR HSSPSGAGEG ASYSEDPGRS VAYPSMTHIP bmy_08395T0/1-788 KASTAPPRHT PAQSPGMDSR HSSPTGAGER ASCSEGPGRS LAFPSLTCIP ENSTTRP00000013306/1-963 KTSPAPPRHT PAQSPGM--- HSNPTGAGER ASCSEGPGRS LAFPSLTCIP 101 150 ENSP00000305839/1-1008 PQESPSKETL EAHGASISGT PEATTSGKPE PVSSVKTEPK SSDDRNPMFL ENSBTAP00000053673/1-963 SQEAATKETL GTQGALISGT PETTFSGRPE PVSSMKTDPS PSENRNPMFL bmy_08395T0/1-788 PQEAATKETL GIHGALISGT PETTFSGKPE PVSSVKTDPS SSENRNPMLL ENSTTRP00000013306/1-963 PQEAAAKETL GTHGALISGT PETTFSGKPE PVSSVKTDPS PSENRNPMLL 151 200 ENSP00000305839/1-1008 EKMDFKSSKQ ADSTSIGKED PGSSRKADPM FTGKAEPEIL GKGDPVAPGR ENSBTAP00000053673/1-963 ENMDSKSSKQ VDSVSIGKED AGSLRKADPM LTGKIEPAIV GKGDSVASGR bmy_08395T0/1-788 QKMDSKSSKQ ADSISIGKED AGSLRKADPM FTGKTEPVIL GKGDPAASGR ENSTTRP00000013306/1-963 QKMDSKSSKQ ADSISIGKED AGSLRKADPM FTGKTEP--- -----VASGR 201 250 ENSP00000305839/1-1008 MDPMTVRKED LGSLGKVDPL CSSKTYTVSP RKEDPGSLRK VDPVSSDKVD ENSBTAP00000053673/1-963 KDPVTPGKED PGSLGKVDPQ CSNKMDTVSL RKEEPGSLGK VDPV------ bmy_08395T0/1-788 MDPVTPRKED PGSLGKVDPE CSSKVDTMSA RKEYPVSLGK VDPA------ ENSTTRP00000013306/1-963 MHPVTPEKED PGSLGKVDPE CSSKVDTMSA RKEYPVSLGK VDPA------ 251 300 ENSP00000305839/1-1008 PVFPRKEEPR YSGKEHPVSS EKVAPTSAEK VDLVLSGKRD PGPSGKADPM ENSBTAP00000053673/1-963 --FPRKEEPR YSGKDLRVSS EEVGPAFAEK TDFVALGKRD PELSANADPV bmy_08395T0/1-788 --FPKKEEPR YSGKDLQVSS EEVGPASAGK TDLVYLGKRD PELSEKVDPM ENSTTRP00000013306/1-963 --FPKKEEPR YSGKDLQVSS EEVGPASAGK TDLVSLGKRD PELSEKVDPV 301 350 ENSP00000305839/1-1008 PLESMDSAST GKTEPGLLGK LIPGSSGKNG PVSSGTGAPG SLGRLDPTCL ENSBTAP00000053673/1-963 SLE------- ---------M LTPGSPDKIM P---GTVALG PSGRVDPTHL bmy_08395T0/1-788 SLENTDSASV GKTDPGSLGM LTPGSSGKIK PVSPGTVALG SSGRVDPTHL ENSTTRP00000013306/1-963 SLENTDSASV GKTDPGSLGM LTPGSSGKIK PVSPGTVALG SSGRVDPTHL 351 400 ENSP00000305839/1-1008 GMADPASVGN VETVPATKED SRFLGKMDPA SSGEGRPVS- --------GH ENSBTAP00000053673/1-963 GMTDPASMVN AEIMSSTKED PQFLGKMDPA SSGKQGSTSV --------GM bmy_08395T0/1-788 GMTDPASMVN AETVSSTKED PQFLGKMDPA SSGKQESMSM RMTKTMSTGQ ENSTTRP00000013306/1-963 GMTEPASMVN AETVSSTKED PQFLGKMDPA SSGKQESMS- --------GQ 401 450 ENSP00000305839/1-1008 TDTTASAKTD LTSLKNVDPM SSGKVDPVSL GKMDPMCSGK PELLSPGQAE ENSBTAP00000053673/1-963 TKTMSTGQVE PTSLKNMDPV SSAEVGSVSL EKVDPVSSGK PEPLSPVQAE bmy_08395T0/1-788 VDPMFSGKMD PTSLKNMDPV SSGKTGPVSL GKVDPVSSGK PEALSPGQAE ENSTTRP00000013306/1-963 VDTMFSGKMD PTSLKNMDPV SSGKTGPVPL GKVDPVSSGK PEPFSPGQAE 451 500 ENSP00000305839/1-1008 RVSVGKAGTV SPGKEDPVSS RREDPISAGS RKTSSE-KVN PESSGKTNPV ENSBTAP00000053673/1-963 LMLVGKTETA SSRKEDLVSS RKGVPISVGN TKTSPPGKVN PESSGKIDSA bmy_08395T0/1-788 L-SVGKTETA SSRKEDPVSS RKGDPISVGN TKASSSGKVN PESSGKIDPV ENSTTRP00000013306/1-963 LMSVGKTETA SSRKEDPVSS RKGDPISVGN TKTSSSGKVN PESSGKIDPV 501 550 ENSP00000305839/1-1008 SSGPGDPRSL GTAGPPSAVK AEPATGGKGD PLSSEKAGLV ASGKAAPTAS ENSBTAP00000053673/1-963 SSGP------ --MGPPSSEK AEAVTRGKAD PLSSEKTGPL APGKVGPPAL bmy_08395T0/1-788 SSGP------ --AGPPSSVK AEAVTGGKAD PLSSEKSGPV APGKVGLMAS ENSTTRP00000013306/1-963 SSGP------ --AGPPSSVK TETVTGGKAD PLSSETSGPV APGKVGLMAS 551 600 ENSP00000305839/1-1008 GKAEPLAVGK EDPVSKGKAD AGPSGQGDSV SIGKVVSTPG KTVPVPSGKV ENSBTAP00000053673/1-963 GKADPPTSGK MDPMIKGKPE AVLPGDIDSE STGKV----- --TPTSLGKT bmy_08395T0/1-788 GKADPPTLGK VDPVCKGKAE TVPPGDMDSE SAGKV----- --APTTLGKT ENSTTRP00000013306/1-963 GKADPPTLGK VDPVCKGKAE TVPPGDMNSE SAGKV----- --APTTLGKT 601 650 ENSP00000305839/1-1008 DPVSLGKAEA IPEGKVGSLP LEKGSPVTTT KADPRASGKA QPQSGGKAET ENSBTAP00000053673/1-963 VRASSGKAEA VPEGKVDALP LEKGNPMNST KVDPRASGKA ESKSERKAET bmy_08395T0/1-788 VQASLGKAEA VPEGKVDPLP LEKGNPMNST KVDPRASGKA EPKSEGKAET ENSTTRP00000013306/1-963 VQASSGKAEA VPEGKVDPLP LEKGNPMNST KVDPGASGKA EPKSEGKAET 651 700 ENSP00000305839/1-1008 KLPGQEGAAA PGEAGAVCLK KETPQASEKV DPGSCRKAEP LASGKGEPVS ENSBTAP00000053673/1-963 TPSGQEGTSS AGKVEAKSPN -EKPLAPEKP DPGSSESAGS IASGKVAPVA bmy_08395T0/1-788 RPPGQEGTAS SGKAEAKSLQ KEKPLTSEKG DPGSS----- IVSGKLEPVA ENSTTRP00000013306/1-963 RPPGQEGTAS SGKAEAKSLQ -EKPLTSEKG DPGSS----- IVSGKLEPVA 701 750 ENSP00000305839/1-1008 LGKADSAPSR KTESPSLGKV VPLSLEKTKP SSSSRQLDRK ALGSARSPEG ENSBTAP00000053673/1-963 LDKTDSVPPR KGEPPSLGKG DSLTLEKA-- --SSRQADGK PCDSAPPPA- bmy_08395T0/1-788 VGKTDSAPQR KGEPPSSGKR AHLTLEKAE- ASSSRQADYK PCGSASHPA- ENSTTRP00000013306/1-963 LGKTDSAPQG KGEPPSSGKQ AHLTLEKAE- ASSSRQADDK PCGSTSYPA- 751 800 ENSP00000305839/1-1008 ARGSEGRVEP KAEPVSSTEA SSLGQKDLEA AGAERSPCPE AAA-PPPGPR ENSBTAP00000053673/1-963 --DGGGRVEP --ASLPSSEA SSLVREDPAA ARAERSPGPE EVAPPPPGPR bmy_08395T0/1-788 --DSGGRVEP --APLPSSEA CSLGQKDPAA TRAERSPGLE AVA-PSPGPR ENSTTRP00000013306/1-963 --DSGGRVEP --APLPSSEA CSLGQKDPAA TRAERNPGLE AVA-PSPGPR 801 850 ENSP00000305839/1-1008 TRDNFTKAPS WEASAPPPPR EDAGTQAGAQ ACVSVAVSPM SPQDGAGGSA ENSBTAP00000053673/1-963 TRDNFTKVPS WEASA-PPPR EDAGTQAGSQ ACVSVAVSPM SPQDGAGGPA bmy_08395T0/1-788 TRDNFTKAPS WEASA-TPPR EDAGTQAGSQ ACVSVAVSPM SPQDGGGGSA ENSTTRP00000013306/1-963 TRDNFTKAPS WEASA-TPPR EDAGTQAGSQ ACVSVAVSPM SPQDGGGGSA 851 900 ENSP00000305839/1-1008 FSFQAAPR-- --APSPPSRR DAGLQVSLGA AETRSVATGP MTPQAAAPPA ENSBTAP00000053673/1-963 FSFQGAPRAP SPAPGPPSRR DAGLQVSLGA AETRSVATGP MTPQAAAPPA bmy_08395T0/1-788 FSFQAAPR-- -RAPWPPS-- ---------- ---------- ---------- ENSTTRP00000013306/1-963 FSFQAAPRAP SPAPRPPSRR DAGLQVSLGA AETRSVATEP MTPQAAAPPA 901 950 ENSP00000305839/1-1008 FPEVRVRPGS ALAAAVAPPE PAEPVRDVSW DEKGMTWEVY GAAMEVEVLG ENSBTAP00000053673/1-963 FPEVRVRPGS ALAAAAAPPE AVEPVRDVSW DEKGMTWEVY GAAMEVEVLG bmy_08395T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013306/1-963 FPEVRVRPGS ALAAAVAPPE AAEPVRDVSW DEKGMTWEVY GAAMEVEVLG 951 1000 ENSP00000305839/1-1008 MAIQKHLERQ IEEHGRQGAP A-PPPAARAG PGRSGSVRTA PPDGAAKRPP ENSBTAP00000053673/1-963 MAIQKHLERQ IEEHGRQGAP APPPPAARPG PGRAGSVRTA PPEGAAKRPP bmy_08395T0/1-788 ---------- ---------- --P------- ---------- ---------- ENSTTRP00000013306/1-963 MAIQKHLERQ IEEHGRQGAP A-PPPAARQG PGRAGSVRTA PPEGAAKRPP 1001 1050 ENSP00000305839/1-1008 GLFRALLQSV RRPRCCSRAG PTAE ENSBTAP00000053673/1-963 GLFRALLQSV RRPRCCSRAG PTAE bmy_08395T0/1-788 ---------- ---------- ---- ENSTTRP00000013306/1-963 GLFRALLQSV RRPRCCSRAG PTAE