KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:23 2014 Check: 00 .. Name: ENSP00000390232/1-839 Len: 844 Check: 921 Weight: 1.00 Name: ENSBTAP00000053687/1-843 Len: 844 Check: 583 Weight: 1.00 Name: ENSTTRP00000003121/1-800 Len: 844 Check: 9161 Weight: 1.00 Name: bmy_17228T0/1-521 Len: 844 Check: 4060 Weight: 1.00 Name: BACU018737/1-777 Len: 844 Check: 1301 Weight: 1.00 // 1 50 ENSP00000390232/1-839 MNRKDFVVLP WGKPGNSVKL KYRNAQELRM EKVQLEFENQ EMEKKLQEFR ENSBTAP00000053687/1-843 MNTKDFVVLP WGKPGSSVKL KYKNAQELRM EKVQLELENQ EMEKKLQEFQ ENSTTRP00000003121/1-800 MNAKDFVVLP WGKAGNSVKL KYKNAQELRM EKVQLELENQ EMEKKLQEFQ bmy_17228T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU018737/1-777 ---------- ---------- -FRNAQELRM EKVQLELENQ EMEKKLQEFQ 51 100 ENSP00000390232/1-839 STRNKEKEDR ESSEYYWKSG KVGKLVNQSY MMSQNKGNVV KFSAGKVKLK ENSBTAP00000053687/1-843 LTRNKEKEER GSSGYHWKSG QVGKLGNQSY TMSQNKGNVI KTETERLLTR ENSTTRP00000003121/1-800 ATRSKEKEER RSSGCHWKSA QVGRLGNQSC MMSRNKGNVI KLSAGKVKLK bmy_17228T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU018737/1-777 ATRSKEKEER GSSGCHWKSG QVGRLGNQSC MMSQNKGNVI TLSAGKVKLK 101 150 ENSP00000390232/1-839 LLKEQIQEPV KPTVNYKMAN SSECEKPKIN GKVCGQCENK AALLVCLECG ENSBTAP00000053687/1-843 LLKVQVEIKV KENIFRKKWR KNKCPSPKHS GVVCGCLINM ATLLVCLECG ENSTTRP00000003121/1-800 LLKEQLQEPV KKPSNYKRAN SSEYEKPKIK GKVCGQCENK AALLVCLECG bmy_17228T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU018737/1-777 LLKEQLQEPV KQPSNYKMAN SSEHEKPKIK GKVCGQCEDK AALLVCLECG 151 200 ENSP00000390232/1-839 EDYCSGCFAK VHQKGALKLH RTTLLQAKSQ ILFNVLDVAH QFIKDVNPDE ENSBTAP00000053687/1-843 EDYCSGCFAK IHQKGALKLH RTTLLQAKSQ LLSNVLDAAH RFIKEVNPDE ENSTTRP00000003121/1-800 EDYCSGCFAK IHQKGALKLH RTTLLQAKSQ ILSNVLDVAH QFIKKVNPDE bmy_17228T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU018737/1-777 EDYCSGCFAK IHQKGALKLH RTTLLQAKSQ ILSNVLDVAH QFIKKVNPDE 201 250 ENSP00000390232/1-839 PKEENNSTKE TSKIQHKPKS VLLQRSSSEV EITTMKRAQR TKPRKSLLCE ENSBTAP00000053687/1-843 PKWKNCSTKE ISKSQQKTKS PILQGSSSQV EDPTTKKEEC ANPRDKPLSE ENSTTRP00000003121/1-800 PKGENHSTKG ISESQHKTKS LLLQGSSSEV ELSTTKKEEC TNTGDRPLCE bmy_17228T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU018737/1-777 PKGENCSTKG ISKSQHKTKS LLLQGSSSEV ELSTTKKEEC ANPRDRLLCE 251 300 ENSP00000390232/1-839 GSFDEEASAQ SFQEVLSQWR TGNHDDNKKQ NLHAAVKDSL EECEVQTNLK ENSBTAP00000053687/1-843 VPFNEEASAQ SFQKVLSQWR TGHHDDKETQ NLHAAKSDSL EECEVQTNLK ENSTTRP00000003121/1-800 GPFVEQASAQ SFQEVLKQWR TGHHDDNEKQ KLHAAKPESL EECEVQTNLR bmy_17228T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU018737/1-777 GPFVEEASAQ SFQEVLNQWR TGHHDDNEKQ KLHAAKPDSL EECEVQTNLR 301 350 ENSP00000390232/1-839 IWREPLNIEL KEDILSYMEK LWLKKHRRTP QEQLFKMLPD TFPH-PHETT ENSBTAP00000053687/1-843 IWTEPLTIEF KEDSLSYMEK LWLKKHRRTP LEQLQNMLPD TFTP-QSKTT ENSTTRP00000003121/1-800 IWTEPLMIEF KEDSLSYMEK LWLKKHRRTP QEQLQNMLVE HLLHLQCKNS bmy_17228T0/1-521 ---------- -------MEK LWLKKHRRTP QEQLQNMLLD TFIP-QCKTS BACU018737/1-777 IWTEPLTIEF KEDSLSYMEK LWLKKHRRTP QEQLQNMLLD TFIP-QCKTS 351 400 ENSP00000390232/1-839 GDAQCSQNEN DEDSDGEETK VQHTALLLPV ETLNIERPEP SLKIVELDDT ENSBTAP00000053687/1-843 SEAQCSQNEN DEDSDVEDIK IQPPALFLPI EELNIERPEP SLKIVELDDT ENSTTRP00000003121/1-800 SEAQCSQNEN DEXXXXEDIK IQPPALFLPV EELNRERPEP SLKIVELDDT bmy_17228T0/1-521 REAQCSQNEN DEDSDVEDIK IQPPALFLPV EELNIERPEP SLKIVELDDT BACU018737/1-777 RKAQCSQNEN DEDSDVEDIK IQPPALFLPV EELNIERPEP SLKIVELDDT 401 450 ENSP00000390232/1-839 YEEEFEEAEN IVPYKVKLAD ADSQR---SC AFHDCQKNSF PYENGIHQHH ENSBTAP00000053687/1-843 YEVEFEEPGN AVPYKVELAD ADSSQRCFDC KIHNTVKNAF LYENDIHQHH ENSTTRP00000003121/1-800 DEAEFEEPGN VVPYKVELAD ADSQQ---SC TFHDYQ-NTF LYENDIRQHH bmy_17228T0/1-521 DEAAFEEPGN VVPYKVDLAD ADSQQ---SC TFHDYQ-NTF LYESDIHQHH BACU018737/1-777 DEAEFEEPGN VVPYKVELAD ADSQQ---SC KFHDYQ-NTF LYENDIHQHH 451 500 ENSP00000390232/1-839 VFDKGKRDFL NLCLRNSSTY YKDNSKAETS NTDFD-NIVD PDVYSSDIEK ENSBTAP00000053687/1-843 VFTNRKSDLF HLHLSNNSFS YKDNSKEKPI NISYTYNLLH FSQYLCNLEV ENSTTRP00000003121/1-800 IFTKGKTHLL HLHLSNNTSY CKDNSKAGTS SADFG-DIVN PDAYSPAVEK bmy_17228T0/1-521 IFAKGKTHLL HLHLSNNTSY CKDNSKAGTS SADFG-DIVN PDAFSPAVEK BACU018737/1-777 IFTKGKTHLL HLHLSNNTSY CKDNSKAGTS SADFG-DTVN PDAFSPAVEK 501 550 ENSP00000390232/1-839 IEESTSFERN LKEKNIGLES NQKSDDSCVS LESKDTLLGR DLEKAPIEEK ENSBTAP00000053687/1-843 IIENIFFERN LKEESIDIES NKKHEDSHIP LESKDSLPST DLEKPCIKEK ENSTTRP00000003121/1-800 LEENSFIERN FKEDSIDIES SQKYDDSCIS IESKDSLPST DLEEASFKGK bmy_17228T0/1-521 LEENSFFERN FKEDSIXXES SQKYDDSCXS LDSKDSLPST DLEKASTKGK BACU018737/1-777 LEENSFFERN FKEDSIDIES SQKYDDSCIS LESKDSLPST DLEKASIKGK 551 600 ENSP00000390232/1-839 LSQDIKESLE LSNLYKRPSF EESKTTKSSL LLQEIACRSK PITKQYQGLE ENSBTAP00000053687/1-843 LSEEDKKSLE FSNLHERPNF EDSKTTESPL LLQEIALRSK PITEQYQGLE ENSTTRP00000003121/1-800 LSQEDKESLE FSNLHERPNS EDSKTTESPL LLXXXXXXXX XXXXXXXXXX bmy_17228T0/1-521 LSQEDKESLE FSNLHERPNS EDSKTTESPL LLQEIALRSK PITEQYQGLE BACU018737/1-777 LSQEDKESLE FSNLHERPNS EDSKTTESPL ---------- --------VN 601 650 ENSP00000390232/1-839 RFFIFDTNER LNLLPSHRLE CNNSSTRITL AEDREWIPDH SLSEYADNAI ENSBTAP00000053687/1-843 RFFVFDKNER LNLLPSHSLE CRSSNTRITI AGDREWIPDH SVSAYADNTV ENSTTRP00000003121/1-800 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---------- ---------- bmy_17228T0/1-521 RFFVFDKNER LNLLPSHSLE CSYSSTRITV AGDREWIPDH SVSAYADNAV BACU018737/1-777 IYYIYCIKNS L----LHEFN CSKFRGLVFC ------IFKH SFRIL--KTV 651 700 ENSP00000390232/1-839 VLGVLQGAQS PSSSRKQQKM GQKSQRPSTA NFPLSNSVKE SSSCLSSSHP ENSBTAP00000053687/1-843 ALGVLKFAQK PSARRTQQKT GQISQRPSTA NLPLSNSVKR RSSCFSSSHP ENSTTRP00000003121/1-800 ---------- ---------X XWTSQRPSTA NLPLCNSVKR SSSRLSSSHP bmy_17228T0/1-521 ALGVLKRAQN PSSRRTQQKT GWTSQRPSTA NLPLCNSVTR SSSRLSSSHP BACU018737/1-777 DLKFFKFFF- ---------L GWTSQRPSTA NLPRCNSVKR SSSRLSSSHP 701 750 ENSP00000390232/1-839 RSRSAAAQSS SRAASEISEI EYIDITDQNE LSLDDTTDQH TLDNLEKELQ ENSBTAP00000053687/1-843 RSRSAVGQSL FKAASEISEI EYIDNTDHDE PFLDDTDDQQ TLDSLEKELN ENSTTRP00000003121/1-800 WSRNTAARSL SRAASEISEI EYIDDTDHDE PFLDDTADQQ TLDSLEKELN bmy_17228T0/1-521 RSRNTAARSL SSAASEISEI EYIDDTDHDE PFLDDTADQQ TLDSLEKELN BACU018737/1-777 RSRNTAARSL SSAASEISEI EYIDDTDHDE PFLDDTADQQ TLDSLEKELN 751 800 ENSP00000390232/1-839 VLRSLADTSE KLYSLTSEEF PDFSSQSLNI SQISTDFLKT SHVRGPCGVE ENSBTAP00000053687/1-843 ELRNLADPSE KLYSLTSEEL PAFNNHLLNI SQTTLDFLKT SCGRGLCGFE ENSTTRP00000003121/1-800 ALRNPADPSE KLYSLTSEEL SAFNNHSLNT SQTTQNFRKS SRARDPCGVE bmy_17228T0/1-521 ALRNPADPSE KLYSLTSEEL PAFNNHSLNI SQTTRNFHKT SRARGPCGVE BACU018737/1-777 ALRNPADPSE KLYSLTSEEL PAFNNHSLNI SQTTQNFRKT SRARGPCGVE 801 850 ENSP00000390232/1-839 ELSCSGRDTK IQSLLSLSES STDEEEEDFL NKQHVITLPW SKST ENSBTAP00000053687/1-843 EQSSSEKDTG IQSLLTVSES STDEEEEDFL DKQHVITLPW SKST ENSTTRP00000003121/1-800 EQSSSEKDTE IQSLLTVSES STDEEEDDFL DEQYVITLSW SKST bmy_17228T0/1-521 EQSSSEKDTE IQSLLTVSES STDEEEEDFL DEQHVITLPW SKST BACU018737/1-777 EQSSSEKDTE IQSLLTVSES STDEEEEDFL DEQHVITLPW SKST