KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:24 2014 Check: 00 .. Name: ENSBTAP00000053688/1-1165 Len: 1179 Check: 9465 Weight: 1.00 Name: ENSTTRP00000001760/1-1161 Len: 1179 Check: 7716 Weight: 1.00 Name: ENSP00000432786/1-1162 Len: 1179 Check: 9666 Weight: 1.00 Name: bmy_07823T0/1-1081 Len: 1179 Check: 8923 Weight: 1.00 Name: BACU003528/1-1145 Len: 1179 Check: 3481 Weight: 1.00 // 1 50 ENSBTAP00000053688/1-1165 ----VVHSKD RLY-----SK KLKRGTMRRR YEDDGISDDE IEGKRTFDLE ENSTTRP00000001760/1-1161 -----FVHSE TIS-----YL WLRRGTMRRR YEDDGISDDE IEGKRTFDLE ENSP00000432786/1-1162 ----MEPEEE RIR-----YS QRLRGTMRRR YEDDGISDDE IEGKRTFDLE bmy_07823T0/1-1081 MLNIATERHE KVRDFILMSL SPQRGTMRRR YEDDGISDDE IEGKRTFDLE BACU003528/1-1145 ---------- ---------- ------MRRR YEDDGISDDE IEGKRTFDLE 51 100 ENSBTAP00000053688/1-1165 EKLHTNKYNA NFVTFMEGKV TDFNVEYIQR GGLRDPLIFK NSDGLGIKMP ENSTTRP00000001760/1-1161 EKLHTNKYNA NFVTFMEGR- -DFNVEYIQR GGLRDPLIFK NSDGLGIKMP ENSP00000432786/1-1162 EKLHTNKYNA NFVTFMEGK- -DFNVEYIQR GGLRDPLIFK NSDGLGIKMP bmy_07823T0/1-1081 EKLHTNKYNA NFVTFMEGK- -DFNVEYIQR GGLRDPLIFK NSDGLGIKMP BACU003528/1-1145 EKLHTNKYNA NFVTFMEGK- -DFNVEYIQR GGLRDPLIFK NSDGLGIKMP 101 150 ENSBTAP00000053688/1-1165 DPDFTVNDVK MCVGSRRMVD VMDVNTQKGI EMTMAQWTRY YETPEEEREK ENSTTRP00000001760/1-1161 DPDFTVNDVK MCVGSRRMVD VMDVNTQKGI EMTMAQWTRY YETPEEEREK ENSP00000432786/1-1162 DPDFTVNDVK MCVGSRRMVD VMDVNTQKGI EMTMAQWTRY YETPEEEREK bmy_07823T0/1-1081 DPDFTVNDVK MCVGSRRMVD VMDVNTQKGI EMTMAQWTRY YETPEEEREK BACU003528/1-1145 DPDFTVNDVK MCVGSRRMVD VMDVNTQKGI EMTMAQWTRY YETPEEEREK 151 200 ENSBTAP00000053688/1-1165 LYNVISLEFS HTRLENMVQR PSTVDFIDWV DNMWPRHLKE SQTESTNAIL ENSTTRP00000001760/1-1161 LYNVISLEFS HTRLENMVQR PSTVDFIDWV DNMWPRHLKE SQTESTNAIL ENSP00000432786/1-1162 LYNVISLEFS HTRLENMVQR PSTVDFIDWV DNMWPRHLKE SQTESTNAIL bmy_07823T0/1-1081 LYNVISLEFS HTRLENMVQR PSTVDFIDWV DNMWPRHLKE SQTESTNAIL BACU003528/1-1145 LYNVISLEFS HTRLENMVQR PSTVDFIDWV DNMWPRHLKE SQTESTNAIL 201 250 ENSBTAP00000053688/1-1165 EMQYPKVQKY CLMSVRGCYT DFHVDFGGTS VWYHIHQGGK VFWLIPPTAH ENSTTRP00000001760/1-1161 EMQYPKVQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VFWLIPPTAH ENSP00000432786/1-1162 EMQYPKVQKY CLMSVRGCYT DFHVDFGGTS VWYHIHQGGK VFWLIPPTAH bmy_07823T0/1-1081 EMQYPKVQKY CLMSVRGCYT DFHVDFGGTS VWYHIHQGGK VFWLIPPTAH BACU003528/1-1145 EMQYPKVQKY CLMSVRGCYT DFHVDFGGTS VWYHIHQGGK VFWLIPPTAH 251 300 ENSBTAP00000053688/1-1165 NLELYENWLL SGKQGDIFLG DRVSDCQRIE LKQGYTFVIP SGWIHAVYTP ENSTTRP00000001760/1-1161 NLELYENWLL SGKQGDIFLG DRVSDCQRIE LKQGYTFVIP SGWIHAVYTP ENSP00000432786/1-1162 NLELYENWLL SGKQGDIFLG DRVSDCQRIE LKQGYTFVIP SGWIHAVYTP bmy_07823T0/1-1081 NLELYENWLL SGKQGDIFLG DRVSDCQRIE LKQGYTFVIP SGWIHAVYTP BACU003528/1-1145 NLELYENWLL SGKQGDIFLG DRVSDCQRIE LKQGYTFVIP SGWIHAVYTP 301 350 ENSBTAP00000053688/1-1165 TDTLVFGGNF LHSFNIPMQL KIYNIEDRTR VSNCVRINMF YFQMTTSIIL ENSTTRP00000001760/1-1161 TDTLVFGGNF LHSFNIPMQL KIYNIEDRTR VPNKFRYP-F YYEMCWYVLE ENSP00000432786/1-1162 TDTLVFGGNF LHSFNIPMQL KIYNIEDRTR VPNKFRYP-F YYEMCWYVLE bmy_07823T0/1-1081 TDTLVFGGNF LHSFNIPMQL KIYNIEDRTR VPNKFRYP-F YYEMCWYVLE BACU003528/1-1145 TDTLVFGGNF LHSFNIPMQL KIYNIEDRTR VPNKFRYP-F YYEMCWYVLE 351 400 ENSBTAP00000053688/1-1165 RGIFCLSSFR EGFFQKDKEN NTFRIDLNIL GVESKKKKKA SVDMCRGPSE ENSTTRP00000001760/1-1161 RYVYCITN-- RSHLTKEFQK ESLSMDLELN GLESGNGDEE AVD--REPRR ENSP00000432786/1-1162 RYVYCITN-- RSHLTKEFQK ESLSMDLELN GLESGNGDEE AVD--REPRR bmy_07823T0/1-1081 RYVYCITN-- RSHLTKEFQK ESLSMDLELN GLESGNGDEE AVD--REPRR BACU003528/1-1145 RYVYCITN-- RSHLTKEFQK ESLSMDLELN GLESGNGDEE AVD--REPRR 401 450 ENSBTAP00000053688/1-1165 ISWKHRIILC DLKEDGLNIS YEGL-KQAQS LPFLKQNKDA GETSSKSLGS ENSTTRP00000001760/1-1161 LS-SRRSVLT SPVANGVNLD YDGLGKTCRS LPSLKKTLSG DSSSDSSRGS ENSP00000432786/1-1162 LS-SRRSVLT SPVANGVNLD YDGLGKTCRS LPSLKKTLAG DSSSDCSRGS bmy_07823T0/1-1081 LS-SRRSVLT SPVANGVNLD YDGLGKTCRS LPSLKKTLSG DSSSDSSRGS BACU003528/1-1145 LS-SRRSVLT SPVANGVNLD YDGLGKTCRS LPSLKKTLSG DSSSDSSRGS 451 500 ENSBTAP00000053688/1-1165 SRGRETQGQT GGRAA-EPSW SGFEFSSIFC FA---AGLYM NGKCRKLPAC ENSTTRP00000001760/1-1161 HNGQVWDPQC SPRKDRQVHL THFELEGLRC LVDKLESLPL HKKCVPTGIE ENSP00000432786/1-1162 HNGQVWDPQC APRKDRQVHL THFELEGLRC LVDKLESLPL HKKCVPTGIE bmy_07823T0/1-1081 HNGQVWDPQC SPRKDRQVHL THFELEGLRC LVDKLESLPL HKKCVPTGIE BACU003528/1-1145 HNGQVWDPQC SPRKDRQVHL THFELEGLRC LVDKLESLPL HKKCVPTGIE 501 550 ENSBTAP00000053688/1-1165 SSPWCLGELR VLLEELANSD PKLALTGVPI VQWPKRDKLK FPTRPKVRVP ENSTTRP00000001760/1-1161 DEDALIADVK ILLEELANSD PKLALTGVPI VQWPKRDKXX XXXXXXXXXX ENSP00000432786/1-1162 DEDALIADVK ILLEELANSD PKLALTGVPI VQWPKRDKLK FPTRPKVRVP bmy_07823T0/1-1081 DEDALIADVK ILLEELANSD PKLALTGVPI VQWPKRDK-- ---------- BACU003528/1-1145 DEDALIADVK ILLEELANSD PKLALTGVPI VQWPKRDKLK FPTRPKVRVP 551 600 ENSBTAP00000053688/1-1165 TIPITKPHTM KPAPRLTPVR PAAASPIVSG ARRRRVRCRK CKACVQGECG ENSTTRP00000001760/1-1161 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000432786/1-1162 TIPITKPHTM KPAPRLTPVR PAAASPIVSG ARRRRVRCRK CKACVQGECG bmy_07823T0/1-1081 ---------- ---------- ---------- ---------- ---------- BACU003528/1-1145 TIPITKPHTM KPAPRLTPVR PAAASPIVSG ARRRRVRCRK CKACVQGECG 601 650 ENSBTAP00000053688/1-1165 VCHYCRDMKK FGGPGRMKQS CVLRQCLAPR LPHSVTCSLC GEVDQNEETQ ENSTTRP00000001760/1-1161 XXXXXXXXXX XXXXXXXXXX XXXXXXXXPR LPHSVTCSLC GEVDQNEETQ ENSP00000432786/1-1162 VCHYCRDMKK FGGPGRMKQS CVLRQCLAPR LPHSVTCSLC GEVDQNEETQ bmy_07823T0/1-1081 ---------- ---------- --------PR LPHSVTCSLC GEVDQNEETQ BACU003528/1-1145 VCHYCRDMKK FGGPGRMKQS CVLRQCLAPR LPHSVTCSLC GEVDQNEETQ 651 700 ENSBTAP00000053688/1-1165 DFEKKLMECC ICNEIVHPGC LQMDGEGLLN EELPNCWECP KCYQEDSSEK ENSTTRP00000001760/1-1161 DFEKKLMECC VCNEIVHPGC LQMDGEGLLN EELPNCWECP KCYQEDSSEK ENSP00000432786/1-1162 DFEKKLMECC ICNEIVHPGC LQMDGEGLLN EELPNCWECP KCYQEDSSEK bmy_07823T0/1-1081 DFEKKLMECC VCNEIVHPGC LQMDGEGLLN EELPNCWECP KCYQEDSSEK BACU003528/1-1145 DFEKKLMECC VCNEIVHPGC LQMDGEGLLN EELPNCWECP KCYQEDSSEK 701 750 ENSBTAP00000053688/1-1165 AQKRKMEESD EEAVQAKVLR PLRSCDEPLT PPPHSPTSML QLIHDPASPR ENSTTRP00000001760/1-1161 TQKRKMEESD EEAVQAKVLR PLRSCDEPLT PPPHSPTSML QLIHDPASPR ENSP00000432786/1-1162 AQKRKMEESD EEAVQAKVLR PLRSCDEPLT PPPHSPTSML QLIHDPVSPR bmy_07823T0/1-1081 TQKRKMEESD EEAVQAKVLR PLRSCDEPLT PPPHSPTSML QLIHDPASPR BACU003528/1-1145 TQKRKMEESD EEAVQAKVLR PLRSCDEPLT PPPHSPTSML QLIHDPASPR 751 800 ENSBTAP00000053688/1-1165 GVVTRSSPGA GPSDHHSASR DERFKRRQLL RLQATERTMV REKENNPSGK ENSTTRP00000001760/1-1161 GVVTRSSPGA GPSDHHSASR DERFKRRQLL RLQATERTMV REKENNPSGK ENSP00000432786/1-1162 GMVTRSSPGA GPSDHHSASR DERFKRRQLL RLQATERTMV REKENNPSGK bmy_07823T0/1-1081 GVVTRSSPGA GPSDHHSASR DERFKRRQLL RLQATERTMV REKENNPSGK BACU003528/1-1145 GVVTRSSPGA GPSDHHSASR DERFKRRQLL RLQATERTMV REKENNPSGK 801 850 ENSBTAP00000053688/1-1165 KELSEVEKAK IRGSYLTVTL QRPTKELHGT SIVPKLQAIT ASSANLRHSP ENSTTRP00000001760/1-1161 KELSEVEKAK IRGSYLTVTL QRPTKELHGT SIVPKLQAIT ASSANLRHSP ENSP00000432786/1-1162 KELSEVEKAK IRGSYLTVTL QRPTKELHGT SIVPKLQAIT ASSANLRHSP bmy_07823T0/1-1081 KELSEVEKAK IRGSYLTVTL QRPTKELHGT SIVPKLQAIT ASSANLRHSP BACU003528/1-1145 KELSEVEKAK IRGSYLTVTL QRPTKELHGT SIVPKLQAIT ASSANLRHSP 851 900 ENSBTAP00000053688/1-1165 RVLVQHCPAR TPQRGDEEGL GGEEEDEEEE EEEDDSAEEG GAARLNGRGS ENSTTRP00000001760/1-1161 RVLVQHCPAR TPQRGDEEGL GGEEEEEEEE EEEDDSAEEG GAARLNGRGS ENSP00000432786/1-1162 RVLVQHCPAR TPQRGDEEGL GGEEEEEEEE EEEDDSAEEG GAARLNGRGS bmy_07823T0/1-1081 RVLVQHCPAR TPQRGDEEGL GGEEEEEEEE EEEDDSAEEG GAARLNGRGS BACU003528/1-1145 RVLVQHCPAR TPQRGDEEGL GGEEEEEEEE EEEDDSAEEG GAARLNGRGS 901 950 ENSBTAP00000053688/1-1165 WAQDGDESWM QREVWMSVFR YLSRRELCEC MRVCKTWYKW CCDKRLWTKI ENSTTRP00000001760/1-1161 WAQDGDESWM QREVWMSVFR YLSRRELCEC MRVCKTWYKW CCDKRLWTKI ENSP00000432786/1-1162 WAQDGDESWM QREVWMSVFR YLSRRELCEC MRVCKTWYKW CCDKRLWTKI bmy_07823T0/1-1081 WAQDGDESWM QREVWMSVFR YLSRRELCEC MRVCKTWYKW CCDKRLWTKI BACU003528/1-1145 WAQDGDESWM QREVWMSVFR YLSRRELCEC MRVCKTWYKW CCDKRLWTKI 951 1000 ENSBTAP00000053688/1-1165 DLSRCKAIVP QALSGIIKRQ PVSLDLSWTN ISKKQLTWLV NRLPGLKDLL ENSTTRP00000001760/1-1161 DLSRCKAIVP QALSGIIKRQ PVSLDLSWTN ISKKQLTWLV NRLPXXXXXX ENSP00000432786/1-1162 DLSRCKAIVP QALSGIIKRQ PVSLDLSWTN ISKKQLTWLV NRLPGLKDLL bmy_07823T0/1-1081 DLSRCKAIVP QALSGIIKRQ PVSLDLSWTN ISKKQLTWLV NRLPGLKDLL BACU003528/1-1145 DLSRCKAIVP QALSGIIKRQ PVSLDLSWTN ISKKQLTWLV NRLPGLKDLL 1001 1050 ENSBTAP00000053688/1-1165 LAGCSWSAVS ALSTSSCPLL RTLDLRWAVG IKDPQIRDLL TPPADKPGQD ENSTTRP00000001760/1-1161 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQD ENSP00000432786/1-1162 LAGCSWSAVS ALSTSSCPLL RTLDLRWAVG IKDPQIRDLL TPPADKPGQD bmy_07823T0/1-1081 LAGCSWSAVS ALSTSSCPLL RTLDLRWAVG IKDPQIRDLL TPPADKPGQD BACU003528/1-1145 LAGCSWSAVS ALSTSSCPLL RTLDLRWAVG IKDPQIRDLL TPPADKPGQD 1051 1100 ENSBTAP00000053688/1-1165 NRSKLRNMTD FRLAGLDITD ATLRLIIRHM PLLSRLDLSH CSHLTDQSSN ENSTTRP00000001760/1-1161 NRSKLRNMTD FRLAGLDITD ATLRLIIRHM PLLSRLDLSH CSHLTDQSSN ENSP00000432786/1-1162 NRSKLRNMTD FRLAGLDITD ATLRLIIRHM PLLSRLDLSH CSHLTDQSSN bmy_07823T0/1-1081 NRSKLRNMTD FRLAGLDITD ATLRLIIRHM PLLSRLDLSH CSHLTDQSSN BACU003528/1-1145 NRSKLRNMTD FRLAGLDITD ATLRLIIRHM PLLSRLDLSH CSHLTDQSSN 1101 1150 ENSBTAP00000053688/1-1165 LLTAVGSSTR YSLTELNMAG CNKLTDQTLI YLRRIANVTL IDLRGCKQIT ENSTTRP00000001760/1-1161 LLTAVGSSTR YSLTELNMAG CNKLTDQTLI YLRRIANVTL IDLRGCKQIT ENSP00000432786/1-1162 LLTAVGSSTR YSLTELNMAG CNKLTDQTLI YLRRIANVTL IDLRGCKQIT bmy_07823T0/1-1081 LLTAVGSSTR YSLTELNMAG CNKLTDQTLI YLRRIANVTL IDLRGCKQIT BACU003528/1-1145 LLTAVGSSTR YSLTELNMAG CNKLTDQTLI YLRRIANVTL IDLRGCKQIT 1151 1200 ENSBTAP00000053688/1-1165 RKACEHFISD LSINSLYCLS DEKLIQKIS ENSTTRP00000001760/1-1161 RKACEHFISD LSINSLYCLS DEKLIQKIS ENSP00000432786/1-1162 RKACEHFISD LSINSLYCLS DEKLIQKIS bmy_07823T0/1-1081 RKACEHFISD LSINSLYCLS DEKLIQKIS BACU003528/1-1145 RKACEHFISD LSINSLYCLS DEKLIQKIS