KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:26 2014 Check: 00 .. Name: bmy_15885T0/1-145 Len: 261 Check: 303 Weight: 1.00 Name: ENSP00000378690/1-261 Len: 261 Check: 1562 Weight: 1.00 Name: ENSTTRP00000015425/1-260 Len: 261 Check: 46 Weight: 1.00 Name: ENSBTAP00000053698/1-261 Len: 261 Check: 1867 Weight: 1.00 Name: BACU011990/1-139 Len: 261 Check: 8610 Weight: 1.00 // 1 50 bmy_15885T0/1-145 MCLTVFPFIF RTMT------ -GSMSLLDRL HEHHGCPSVV HEVILERAEL ENSP00000378690/1-261 MRLPEQPGEG KPENEKKGDG GALGGGEEPP RSQAPDFPTW EKMPFHHVTA ENSTTRP00000015425/1-260 MRLPEQPGEG KPENEEKGGR GAPGGGEELL RTQAPDFPTW EKMPFHHVTA ENSBTAP00000053698/1-261 MRLPEQPGEG KPENEEKGGR GAPGGGEEPP RTQAPDFPTW EKMPFHHVTA BACU011990/1-139 MGLVAPRHVG SSRT------ --------RA RTQVPCTGRW ---ILNHCAT 51 100 bmy_15885T0/1-145 AVLVPGVHML HP----SSIE QLSVKRLLQS VEIREAFRVL DRDGNGFISK ENSP00000378690/1-261 GLLYKGNYLN RSLSAGSDSE QLANISVEEL DEIREAFRVL DRDGNGFISK ENSTTRP00000015425/1-260 GLLYKGNYLN RSLSAGSDSE QLANISVEEL DEIREAFRVL DRDGNGFISK ENSBTAP00000053698/1-261 GLLYKGNYLN RSLSAGSDSE QLANISVEEL DEIREAFRVL DRDGNGFISK BACU011990/1-139 REVPPHSS-- ---------- ---------- ---------- ---------- 101 150 bmy_15885T0/1-145 QELGMAMRSL GYMPSEVELA IIMQRLDMDG S--------- ---------- ENSP00000378690/1-261 QELGMAMRSL GYMPSEVELA IIMQRLDMDG DGQVDFDEFM TILGPKLVSS ENSTTRP00000015425/1-260 QELGMAMRSL GYMPSEVELA IIMQR-DMDG DGQVDFDEFM TILGPKLVSS ENSBTAP00000053698/1-261 QELGMAMRSL GYMPSEVELA IIMQRLDMDG DGQVDFDEFM TILGPKLVSS BACU011990/1-139 ---------- ---------- ---------- ---------- --LSP----- 151 200 bmy_15885T0/1-145 ---------- --------SL SGCEI----- -----FSDTL QVEHY----- ENSP00000378690/1-261 EGRDGFLGNT IDSIFWQFDM QRITLEELKH ILYHAFRDHL TMKDIENIII ENSTTRP00000015425/1-260 EGRDGFLGNT IDSIFWQFDM QRITLEELKH ILYHAFRDHL TMKDIENIII ENSBTAP00000053698/1-261 EGRDGFLGNT IDSIFWQFDM QRITLEELKH ILYHAFRDHL TMKDIENIII BACU011990/1-139 ---------- ------QFDM QRITLEELKH ILYHAFRDHL TMKDIENIII 201 250 bmy_15885T0/1-145 ---------- -RCHT----- ---------- ---------- LVF------- ENSP00000378690/1-261 NEEESLNETS GNCQTEFEGV HSQKQNRQTC VRKSLICAFA MAFIISVMLI ENSTTRP00000015425/1-260 NEEESLNETS GNCQTEFEGV HSQKQNRQTC VRKSLICAFA MAFIISVMLI ENSBTAP00000053698/1-261 NEEESLNETS GNCQTEFEGV HSQKQNRQTC VRKSLICAFA MAFIISVMLI BACU011990/1-139 NEEESLNETS GNCQTEFEGV HSQKQNRQTC VRKSLICAFA MAFIISVMLI 251 300 bmy_15885T0/1-145 ---------- E ENSP00000378690/1-261 AANQILRSGM E ENSTTRP00000015425/1-260 AANQILRSGM E ENSBTAP00000053698/1-261 AANQILRSGM E BACU011990/1-139 AANQILRSGM E