KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:21:28 2014 Check: 00 .. Name: ENSBTAP00000053705/1-2028 Len: 2038 Check: 4930 Weight: 1.00 Name: ENSTTRP00000012902/1-1937 Len: 2038 Check: 3858 Weight: 1.00 Name: bmy_14443T0/1-1890 Len: 2038 Check: 880 Weight: 1.00 Name: BACU008776/1-574 Len: 2038 Check: 4808 Weight: 1.00 // 1 50 ENSBTAP00000053705/1-2028 MDVTVSELME LFLQSPLVTW VKTFGPFGSG NQDNLTMYMD LADGIFLNQI ENSTTRP00000012902/1-1937 ---------- ---------- VKTFGPFGSG NQDTLTMYMD LADGIFLNQI bmy_14443T0/1-1890 MDVTVSELME LFLQSPLVTW VKTFGPFGSG NQDNLTMYMD LADGIFLNQI BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053705/1-2028 MLQIDPRPTN QRINKHVNND VNLRIQNLTI LVRNIKTYYQ EVLQQLIVMN ENSTTRP00000012902/1-1937 MLQIDPRPTN QRINKHVNND VNLRIQNLTI LVRNIKTYYQ EVLQQLIVMN bmy_14443T0/1-1890 MLQIDPRPTN QRINKHVNND VNLRIQNLTI LVRNIKTYYQ EVLQQLIVMN BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000053705/1-2028 LPNVLMIGKD PLSGKSMEEI KKVLLLVLGC AV-------- --QCERKEEF ENSTTRP00000012902/1-1937 LPNVLMI-KD PLSGKSMEEI KKVLLLVLGC AV-------- --QCERKEEF bmy_14443T0/1-1890 LPNVLMIGKD PLSAP----- --------GC PCKTFINTCN PPQCERKEEF BACU008776/1-574 ---------- ---------- ---------M SC-------- ---------- 151 200 ENSBTAP00000053705/1-2028 IERIKQLDIE TQAGIVAHIQ EVTHNQENVF DLQWLELPDV APEELEALSR ENSTTRP00000012902/1-1937 IERIKQLDIE TQAGIVAHIQ EVTHNQENVF DLQWLELPDV APEELEALSR bmy_14443T0/1-1890 IERIKQLDIE TQAGIVAHIQ EVTHNQENVF DLQWLELPDV APEELEALSR BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000053705/1-2028 NMVFHLRRLI DERDECTELI VDLTQERDYL QAQHPPSPLK SSSAESTPSP ENSTTRP00000012902/1-1937 NMVFHLRRLI DERDECTELI VDLTQERDYL QAQHPPSPLK SSSAESTPSP bmy_14443T0/1-1890 NMVFHLRRLI DERDECTELI VDLTQERDYL QAQHPPSPLK SSSAESTPSP BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000053705/1-2028 TSSLSSEDKQ HLAVELADTK ARLRRVRQEL EEKTEQLVDT RHEVDQLVLE ENSTTRP00000012902/1-1937 TSSLSSEDKQ HLAVELADTK ARLRRVRQEL EEKTEQLVDT RHEVDQLVLE bmy_14443T0/1-1890 TSSLSSEDKQ HLAVELADTK ARLRRVRQEL EEKTEQLVDA RHEVDQLVLE BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000053705/1-2028 LQKVKQENIQ LAADARSARA YRDELDSLRE KANRVERLEM ELVRCREKLH ENSTTRP00000012902/1-1937 LQKVKQENIQ LAADARSARA YRDELDALRE KANRVERLEM ELVRCREKLH bmy_14443T0/1-1890 LQKVKQENIQ LAADARSARA YRDELDSLRE KANRVERLEM ELVRCREKLH BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000053705/1-2028 DVDFYKARME ELREDNIILI ETKAMLEEQL TAARARGDKV HELEKENLQL ENSTTRP00000012902/1-1937 DVDFYKARME ELREDNIILI ETKAMLEEQL TAARARGDKV HELEKENLQL bmy_14443T0/1-1890 DVDFYKARME ELREDNIILI ETKAMLEEQL TAARARGDKV HELEKENLQL BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000053705/1-2028 KSKLHDLELD RDTDKKRIEE LLEENMVLEI AQKQSMNESA HLGWELEQLS ENSTTRP00000012902/1-1937 KSKLHDLELX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14443T0/1-1890 KSKLHDLELD RDTDKKRIEE LLEENMVLEI AQKQSMNESA HLGWELEQLS BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000053705/1-2028 KNADLSDASR KSFVFELNEC ASSRILKLEK ENQSLQSTIQ GLRDASLALE ENSTTRP00000012902/1-1937 XXXXXXXXSR KSFVFELNEC ASSRILKLEK ENQSLQSTIQ GLRDASLALE bmy_14443T0/1-1890 KNADLSDASR KSFVFELNEC ASSRILKLEK ENQSLQSTIQ GLRDASLALE BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000053705/1-2028 ESTLKCGELQ KENQQLIKKI EKLKTQLERE KQSNQDLETL SEELIKEKEQ ENSTTRP00000012902/1-1937 ESNLKCGELE KENHQLNKKI EKLQTQLERE KQSNQDLETL SEELIREKEQ bmy_14443T0/1-1890 ESSLKCGELE KENHQLNKKI EKLQTQLERE KQSNQDLETL SEELIKEKEQ BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000053705/1-2028 LQSDMETLKA DKARQIKDLE QEKDHLNQAV WTLRERSQVS SEARAKDVEQ ENSTTRP00000012902/1-1937 LQSDMETLKA DKARQIRDLE QEKDHLNQTV WTLRERSQVS SEARAKDFEQ bmy_14443T0/1-1890 LQSDMETLKA DRARQIRDLE QEKDHLNQTV WTLRERSQVS SEARAKDAEQ BACU008776/1-574 ---------- ---------- -------HTL WT-------- ---------- 601 650 ENSBTAP00000053705/1-2028 ENKALHRTVA ETSGRLSRLE LEQQQLQRAL EQAQEKAGRA EALERELGQL ENSTTRP00000012902/1-1937 ESKALQGTVT EASGRLSSLE ---------L EQAQEKAGQV EELQREL--- bmy_14443T0/1-1890 ESKALHGTVA EASGRLSRPE ---------L EQAQEKAGRA EELEREL--- BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000053705/1-2028 EEEKGRLEEE KGRLAQRASA LQAAGERAEA AERESHGLAL ENRQLRKSLD ENSTTRP00000012902/1-1937 ----RRLEEE KGRLAQRVSS LQAAGEQADA MERESRGLAL ENRQLRKSLD bmy_14443T0/1-1890 ----RRLEEE KGRLAQRVSS LQAAGERADA AERESRGLAL ENRRLRKSLD BACU008776/1-574 ---------- -------VSP VQHS------ ---------- ---------- 701 750 ENSBTAP00000053705/1-2028 ALQNVSVQLA GLEQDNRQLD EENLELRRMV EAMRFTGAKV AQMERENQEL ENSTTRP00000012902/1-1937 ALQNMQVQLA SLELDNRQLD KENLELRRTV EAMRFTGAKV A-------EL bmy_14443T0/1-1890 ALQNVQVRLA GLELDNRQLD EENLELRRVA EATRFTGAKV A-------QL BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000053705/1-2028 EREKQELRKS VELLKALGKK SERLELSYQS LSAENLRLQQ SLDSGSQKAQ ENSTTRP00000012902/1-1937 EREKQELRTS VELLKALGKK SERLELSYQS LSAENLRLQQ SLDSGGQK-H bmy_14443T0/1-1890 ERENQELRRS VELLKALGKK SERLELGYQS LSAENLRLQQ SLDSGGQKAQ BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000053705/1-2028 ALERELGQLE AENQGLRRDL EALRLAHRQL ERAEQERKAL EQEVAQLEKD ENSTTRP00000012902/1-1937 ALERELGQLE AEN-ALQRD- EALRLANRQL ERAGQDRKVL EQEVVQLEKT bmy_14443T0/1-1890 ALERELGQLE AENQALQRDL EALRLANRQL ERAGQDRQAL EQEVAQLEKD BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000053705/1-2028 KKLLEKEARR LWQQVELKDA VLDDSSAKLS AAERESRALD KELARCRDAA ENSTTRP00000012902/1-1937 ELL--EKARR LQQELDVDD- -----SAKLS AXXXXXXXXX XXXXXXXXXX bmy_14443T0/1-1890 KKLLEKEARR LWQQVELKDA VLDDSSAKLS AAERESRALD RELARCRDAA BACU008776/1-574 ---------- ---------- ---------- ---------- -----CRGAS 901 950 ENSBTAP00000053705/1-2028 GKLKELEKDN RDLTKQVTMH TRTLTTLRED LVQEKLKSQK LSSELDKLSQ ENSTTRP00000012902/1-1937 XXX-----XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14443T0/1-1890 GKLKELEKDN RDLTKQVTMH TRTLTTLRED LVQEKLKSQQ LSSELDKLSQ BACU008776/1-574 GHL------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000053705/1-2028 ELEKVGLHKE MLLQDDNSNG DPKYKILESI NESALKTTLS MKEEKIAFLE ENSTTRP00000012902/1-1937 XXXXXXXXXX XXXXXXXXXX XXXXXXXESI TESAFKTALA RKEEKIVFLE bmy_14443T0/1-1890 ELEKLGLHKE LLLRDDSSNG DTKYKILESI NESAFKTTLA RKEEKIVFLE BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000053705/1-2028 AQVEEKASLN HQLQNEIQVL KKECEILKQS QEGGTQAQNS FKHPMGTSVE ENSTTRP00000012902/1-1937 AQMEEKASLT HHLQNELQVV R--------- ---------- --------AG bmy_14443T0/1-1890 AQMEEKASLN HHLQNELQVL KKECEILRKN QEEGKQVQNS FKHPVGPLVE BACU008776/1-574 ---------- ---------- ---C------ ---------- ----TGP--- 1051 1100 ENSBTAP00000053705/1-2028 GHQGKDPWAP SHKEATMELL RVKDRAIELE RNNAALQAEK QLLKEQLQHL ENSTTRP00000012902/1-1937 GHPGKERWGP SPKEATMELL RVKDRAIELE RNNAALQAEK QLLKEQLQHL bmy_14443T0/1-1890 GHPGKERWGP SPKEATMELL RVKDRAIELE RNNAALQAEK QLLKEQLQHL BACU008776/1-574 -------W-- ----ARMSVL ---------- ---------- ---------- 1101 1150 ENSBTAP00000053705/1-2028 ETQNTAFSSQ ILTLQKQSTF LQEHNTTLQT QTAKLQVENS TLTSQSASLS ENSTTRP00000012902/1-1937 ETQNTAFSSQ ILTLQKQSAF LQEHNTTLQT QTAKLQVENS TLGSQSASLT bmy_14443T0/1-1890 ETQNTAFSSQ ILALQKQSAF LQEHNTTLQT QTAKLQVENS TLSSQSASLT BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000053705/1-2028 AQYALLQSQQ TAKESENESL QKQQEQLTAA YQALLQDHEH LGALHERQSA ENSTTRP00000012902/1-1937 AQYALLQNQQ TAKESELENL QKQQEELTAT YQALLQDHEH LGALHERQSA bmy_14443T0/1-1890 AQYALLQNQQ TAKESEIENL QKQQEQLTAA YQALLQDHEH LGALHERQSA BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000053705/1-2028 EYEALIHQHS CLKTLHRNLE LEHKELGERH SDMLKHKAEL DELEKVLRAE ENSTTRP00000012902/1-1937 EYEALIRQHS CLKTLHRNLE LEHRELGERH GDMLKRRAEL DELEKVLNAE bmy_14443T0/1-1890 EYEALIRQHS CLKTLHRNLE LGHKELGERH SDMLKHKAEL DELEKVLNAE BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000053705/1-2028 REALQQEQRT SAMAASENRR LQEELDRVNF LHHQLKGEYE ELHTHTKELK ENSTTRP00000012902/1-1937 REALQQEQRT SAAVASENQR LQEELDRVSF LHHQLKGEHE ELHSHTKELK bmy_14443T0/1-1890 REALQQEQRT SAAAASENRR LQEELDR--- ---------- ---------- BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000053705/1-2028 TSLNSSQLEL NRWQARFDTL KEQHQSMDIS LTKLDNHCEL LSRLKGNLEE ENSTTRP00000012902/1-1937 TSLNSSQLEL SRWQARFDEL KEQHQSMDIS LTKLDTHCEL LSRLKGNLEE bmy_14443T0/1-1890 ---------- ---------- ---------- ---------- ---------- BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000053705/1-2028 ENHHLLSQIQ LLSQQNQMLL EQNLENKEQY HEEQKQYIDK LNALRRHKEK ENSTTRP00000012902/1-1937 ENHHLLSQIQ LLSQQNQMLL EQNLENKEQY HEEQKQYIDK LN-LRRHKEK bmy_14443T0/1-1890 ---------- ---------- ---------- --------DK LNALRRHKEK BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000053705/1-2028 LEEKIMDQYK FYDPAPKKKN HWIGAKALVK LIKPKKEGSR ERLKSTTDSP ENSTTRP00000012902/1-1937 LEEKIMDQYK FYDPAPKKKN HWIGAKALVK LIKPKKEGSR ERLKSTTDSP bmy_14443T0/1-1890 LEEKIMDQYK FYDPAPKKKN HWIGAKALVK LIKPKKEGSR ERLKSTTDSP BACU008776/1-574 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000053705/1-2028 PRQLESPDPT LPSASQPLRS QPENPESTPS GSSCPEERDS HNGPLGKGPG ENSTTRP00000012902/1-1937 PRQLESPDPT SPSTSQPLRS QPENPEATPS GSSCAEERDI HKGTLGKGPG bmy_14443T0/1-1890 PRQLESPDPT SPSASQPLRS QPENPEATPL GSSCAEERDI HNGTLGKGPG BACU008776/1-574 ---------- ---------- ---------- ---------- -------SPG 1501 1550 ENSBTAP00000053705/1-2028 DLKPKRGSPH RGSLDHKDAS ADPAVKPWPL ELGPRPCSTS AITTTPSSAS ENSTTRP00000012902/1-1937 DLKPKRGSPH RDSLDRKDAS ADPAMKPWPM EPGPRPCSSS AITTTPSSST bmy_14443T0/1-1890 DLKPKQGSPH RDSLDRKDAS ADPAMKTWPV ELGPRPCSSS AITTTPSSST BACU008776/1-574 DLKPKQGSPH RDSLDRKDAS ADPAMKTWPV ELGPRPCSSS AITTAPSSST 1551 1600 ENSBTAP00000053705/1-2028 SISRHPGRTK GYNSDDSLCE PSLELEFLHP RQYASRPGSL ESSRNASSGS ENSTTRP00000012902/1-1937 PISRHPGRAK GYNSDDSLCE PSLELEFAPH RQYASRPGSL ESSRNASSDS bmy_14443T0/1-1890 PISRHPGRTK GYNSDDSLCE PSLELEFAPH RQYASRPGSL ESSRNASSDS BACU008776/1-574 PISRHPGRTK GYNSDDSLCE PSLELEFAPH RQYASRPGSL ESSRNASSDS 1601 1650 ENSBTAP00000053705/1-2028 SPLNLKGSSD QLHGRSESFS SEDLIPSRDT ATLPRDASTP GRPALSRHEY ENSTTRP00000012902/1-1937 SPLNLKGSSD QLHGRSESFS SEDLIPSRDT ATLPRDASTP GRTALSRHEY bmy_14443T0/1-1890 SPLNLKGSSD QLHGRSESFS SEDLIPSRDT ATLPRDASTP GRTALSRHEY BACU008776/1-574 SPLNLKGSSD QLHGRSESFS SEDLIPSRDT ATLPRDASTP GRTALSRHEY 1651 1700 ENSBTAP00000053705/1-2028 PPPRNGPLPQ EGVQKRSTAQ PHGGARPCST SPSSEMVTLE EFLEESNRDS ENSTTRP00000012902/1-1937 PPPRNGPLPQ EGARKRGAAQ PHGGVRPCSA SPSSEMVTLE EFLEESNRGS bmy_14443T0/1-1890 PPPRNGPLPQ EGARKRGAAQ PHGGVRPCSA SPSSEMVTLE EFLEESNRGS BACU008776/1-574 PPPRNGPLPQ EGARKRGAAQ PHGGVRPCSA SPSSEMVTLE EFLEESNRGS 1701 1750 ENSBTAP00000053705/1-2028 PSPDAPSCRD DLLSDYFRKA SDLPSTGGQP GPLPRKEGAK MPTSFVAPTI ENSTTRP00000012902/1-1937 PSSDAPSCRD DLLSDYFRKA SDLPAIGGQP GPPTRKEGAK MPTSFVAPTI bmy_14443T0/1-1890 PSSDAPSCRD DLLSDYFRKA SDLPAIVGQP GPPTRKEGAK MPTSFVAPTI BACU008776/1-574 PSSDAPSCRD DLLSDYFRKA SDLPTIVGQP GPPTRKEGAK MPTSFVAPTI 1751 1800 ENSBTAP00000053705/1-2028 KMPVCTSEGK PLKPGQYVKP NFRATEAEAM PSVPQRQAQP SQSLSLGRAR ENSTTRP00000012902/1-1937 KMPVTTSEGK PLKPGQYVKP NFRPAEAEAL PSAPQRQAQL PQSLSLGRLR bmy_14443T0/1-1890 KMPVTTSEGK PLKPGQYVKP NFRPTEAEAL PSAPQRQAQP PQSLSLGRLR BACU008776/1-574 KMPVTTTEGK PLKPGQYVKP NFRPAEAEAL PSAPQRQAQP PQSLSLGRLR 1801 1850 ENSBTAP00000053705/1-2028 QAAMPHASHT PASRSASLNR AFSLASADLL RASGPEACKQ ELGGPEASGG ENSTTRP00000012902/1-1937 QAAMPPASHT PTGRSASLSR AFSLASADLL RASGPEACKQ EPGAPEASAG bmy_14443T0/1-1890 QAAMPPASHT PTGRSASLSR AFSLASADLL RASGPEACKQ EPGGPEASGG BACU008776/1-574 QAAMPPASHT PTGRSASLSR AFSLASADLL RASGPEACKQ EPGGPEASGG 1851 1900 ENSBTAP00000053705/1-2028 RDPGSHNLQS STAPGSHGLA RERTPLVGKA GGSCQGPSPR SRPLDLRRFS ENSTTRP00000012902/1-1937 RDTGSHSLQG STPPSSHSLT RERTPLVGKA GGPCQGPGPR SRPLDARRFS bmy_14443T0/1-1890 RDTGSHSLQS STPPSSHSLA RERTPLVGKA GGSCQGPGPR SRPLDTRRFS BACU008776/1-574 RDTGSHSLQS STAPGSHSLA RERTPLVGKA GGSCQGPGPR SRPLDTRRFS 1901 1950 ENSBTAP00000053705/1-2028 LAPPKEERPP PLQQSATSPA IATGGGGSSG SSSSQLQHFS PSAAPVPRTK ENSTTRP00000012902/1-1937 LAPPKEERPA PLQQSATSPA IAAGGGSG-- -SNSQLQHCS PAAAPAARTK bmy_14443T0/1-1890 LAPPKEERPA PLQQSATSPA IAAGGGSGSG -SNSQFQHCS PAAAPAARTK BACU008776/1-574 LAPPKEERPA PLQQSATSPA IAAGGGSGSG -SNSQLQHCS PATAPAARTK 1951 2000 ENSBTAP00000053705/1-2028 PQGPLHPGEL ATIPPVRGGL SPSEGDGVPG QGHSEGLPAK VPGRSPDLAP ENSTTRP00000012902/1-1937 PQASPHSGEV ATIAPVWAGF SPSEGDGVPG QGYSEGLPAK GPGRSPDLAP bmy_14443T0/1-1890 PQASLHSGEA ATIAPVRAGF SPSEGDGVLG QGHSEGLPAK GPGRSPDLAP BACU008776/1-574 PQASPHSGEA ATIAPVRAGF SPSEGDGVLG QGHSEGLPAK GPGRSPDLAS 2001 2050 ENSBTAP00000053705/1-2028 QGSRTPEDFG RGSSSKSTPA SPEPGGDQQT VWYEYGCV ENSTTRP00000012902/1-1937 HGSRASEDFS RGSSSKSTPA SPEPAGDQQT VWYEYGCV bmy_14443T0/1-1890 HGSRASEDFS RGSSSKSTPA SPEPAGDQQT VWYEYGCV BACU008776/1-574 HGSRASEDFS RGSSSKSTPA SPEPAGDQQT VWYEYGCV