KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:28 2014 Check: 00 .. Name: ENSTTRP00000015611/1-368 Len: 377 Check: 892 Weight: 1.00 Name: ENSBTAP00000053714/1-332 Len: 377 Check: 9913 Weight: 1.00 Name: ENSP00000362239/1-333 Len: 377 Check: 5616 Weight: 1.00 Name: bmy_04071T0/1-262 Len: 377 Check: 6644 Weight: 1.00 Name: BACU016264/1-299 Len: 377 Check: 8785 Weight: 1.00 // 1 50 ENSTTRP00000015611/1-368 MACPR----- -PLSQCDPTP LPPGPPXXXX XXXXXXXXXX XXXXXEQRSA ENSBTAP00000053714/1-332 MACPR----- -PLSQCDHTP L-PGPPAGHW PLPLSRRRRE MKSNKEQRSA ENSP00000362239/1-333 MACSR----- -PPSQCEPTS LPPGPPAGRR HLPLSRRRRE MSSNKEQRSA bmy_04071T0/1-262 MFSGRLLLLS LSLQAAQRTE ARAPYPPECW SWGVQRKRGA E--------A BACU016264/1-299 ---------- ---------- ---------- ---------- MSSNKEQRSA 51 100 ENSTTRP00000015611/1-368 VFVILFALIT ILILYTSNSA NEVFHYGSLR GRTRRPVNLK KWSITDGYIP ENSBTAP00000053714/1-332 VFVILFALIT ILILYSSSSA NEVFHYGSLR GRTRRPVNLR KWSITDGYIP ENSP00000362239/1-333 VFVILFALIT ILILYSSNSA NEVFHYGSLR GRSRRPVNLK KWSITDGYVP bmy_04071T0/1-262 VFVILFALIT ILILYSSNSA NEVFHYGSLR GRTRRPVNLK KWSITDGYIP BACU016264/1-299 VFVILFALIT ILILYSSNSA NEVFHYGSLR GRSRRPVNLK KWSITDGYTP 101 150 ENSTTRP00000015611/1-368 ILGNKTLPSR CHQCVIVTSS SHLLGTKLGP EIERAECTIR MNDAPTTGYS ENSBTAP00000053714/1-332 ILGNKTLPSR CGQCVIVTSS SHLLGTKLGP EIERAECTIR MNDAPTTGYS ENSP00000362239/1-333 ILGNKTLPSR CHQCVIVSSS SHLLGTKLGP EIERAECTIR MNDAPTTGYS bmy_04071T0/1-262 ILGNK----- ---CVIVTSS SHLLGTKLGP EIERAECTIR MNDAPTTGYS BACU016264/1-299 ILGNKTLPSR CHQCVIVTSS SHLLGTKLGP EIERAECTIR MNDAPTTGYS 151 200 ENSTTRP00000015611/1-368 ADVGNKTTFR VVAHSSVFRV LRRPQEFVNR TPETVFIFWG PPNKMQKPQG ENSBTAP00000053714/1-332 ADVGNKTTFR VVAHSSVFHV LRRPQEFVNR TPETVFIFWG PPNKMQKPQG ENSP00000362239/1-333 ADVGNKTTYR VVAHSSVFRV LRRPQEFVNR TPETVFIFWG PPSKMQKPQG bmy_04071T0/1-262 ADVGNKTTFR VVAHSSVFRV LRRPQEFVNR TPETVFIFWG PPNKMQKPQG BACU016264/1-299 ADVGNKTTFR VVAHSSVFRV LRRPQEFVNR TPETVFIFWG PPNKMQKPQG 201 250 ENSTTRP00000015611/1-368 SLVRVIQRAG LAFPNMEAYA VSLGRMRQFD DLFRSETGKD REKSHSWLST ENSBTAP00000053714/1-332 SLVRVIQRAG LVFPNMEAYA ISLSRMRQFD DLFRSETGKD REKSHSWLST ENSP00000362239/1-333 SLVRVIQRAG LVFPNMEAYA VSPGRMRQFD DLFRGETGKD REKSHSWLST bmy_04071T0/1-262 SLVRVIQRAG LVFPNMEAYA VSLGRMRQFD DLFRSETGKD REKSHSWLST BACU016264/1-299 SLVRVIQRAG LVFPNMEAYA VSLGRMRQFD DLFRSETGKD REKSHSWLST 251 300 ENSTTRP00000015611/1-368 GWFTMVIAVE LCDHVHVYGM VPPDYCS-GP ACSACPTTTM SPRGRTSVSP ENSBTAP00000053714/1-332 GWFTMVIAVE LCDHVHVYGM VPPDYCSLRP HLQRMPYHYY EPKGPDEC-- ENSP00000362239/1-333 GWFTMVIAVE LCDHVHVYGM VPPNYCSQRP RLQRMPYHYY EPKGPDEC-- bmy_04071T0/1-262 GWFTMVIAVE LCDHVHVYGM VPPDYC---- ---------- ---------- BACU016264/1-299 GWFTMVIAVE LCDHVHVYGM VPPDYCSQRP RLQRMPYHYY EPKGPDEC-- 301 350 ENSTTRP00000015611/1-368 TSRMSTAAAT TTASSRRGSS RPGPRCTESP SPTPPGRPPL WDLTRDTGEV ENSBTAP00000053714/1-332 ------VTYI QNENSRKGNH H--------- ---------- --------RF ENSP00000362239/1-333 ------VTYI QNEHSRKGNH H--------- ---------- --------RF bmy_04071T0/1-262 ---------- ---------- ---------- ---------- ---------- BACU016264/1-299 ------VTYI QNEHSRKGNH H--------- ---------- --------RF 351 400 ENSTTRP00000015611/1-368 VSAQPLDQGP SSGSRLVRVS SGHSP-- ENSBTAP00000053714/1-332 ITEKRV---F SSWAQLYGIT FSHPSWT ENSP00000362239/1-333 ITEKRV---F SSWAQLYGIT FSHPSWT bmy_04071T0/1-262 ----RV---- ---------- ------- BACU016264/1-299 ITEKRV---F SSWAQLYGIT FSHPSWT