KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:34 2014 Check: 00 .. Name: bmy_19874T0/1-326 Len: 743 Check: 7457 Weight: 1.00 Name: ENSP00000356919/1-670 Len: 743 Check: 4631 Weight: 1.00 Name: ENSBTAP00000053726/1-579 Len: 743 Check: 9282 Weight: 1.00 Name: BACU003839/1-545 Len: 743 Check: 4046 Weight: 1.00 Name: ENSTTRP00000008064/1-616 Len: 743 Check: 6450 Weight: 1.00 // 1 50 bmy_19874T0/1-326 ---------- ---------- ---------- ---------- ---------- ENSP00000356919/1-670 -------MGE PAGVAGTMES PFSPGLFHRL DEDWDSALFA ELGYFTDTDE ENSBTAP00000053726/1-579 LGRGTCVSGE PAGVAGTMES PFSPGLPHRP DEDWDSALFA ELGYFTDTDD BACU003839/1-545 ---------- -------MES PFSPGLPHRP DEEWDSTLFA ELGY----DD ENSTTRP00000008064/1-616 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_19874T0/1-326 ---------- --------MG LDRAAWTYNL IDEDSLL--- ---------- ENSP00000356919/1-670 LQLEAANETY ENNFDNLDFD LDLMPWESDI WDINNQICTV KDIKAEPQPL ENSBTAP00000053726/1-579 LQLDAANETY ESNFDNLDFD LDLMPWETGI WDVNNQFCTV KDIKTEPQPL BACU003839/1-545 LQLDAANETY ENNFDNLDFD FDLMPWETGI WDINNQFCTV KDIKAEPQPL ENSTTRP00000008064/1-616 ---------- ENNFDNLDFD FDLMPWETGI WDINNQFCTV KDIKAEPQPL 101 150 bmy_19874T0/1-326 -----KCKV- ---------- ---------- ---------- ---------- ENSP00000356919/1-670 SPASSSYSVS SPRSVDSYSS TQHVPEELDL SSSSQMSPLS LYGENSNSLS ENSBTAP00000053726/1-579 SPASSSCSIS SPQSVDSYSS TQHVPEELDL SSTSQMSPLS LYGESSNNPS BACU003839/1-545 SPASSSCSIS SPQSVDSYSS TQHVPEELDL SSTSQISPFS LYGESFNSPS ENSTTRP00000008064/1-616 SPASSSCSVS SPQSVDSYSS TQHVPEELDL SSTSQMSPFS LYGESFNSPS 151 200 bmy_19874T0/1-326 ---------- ---------- ---------- ---------- ---------- ENSP00000356919/1-670 SAEPLKEDKP VTGPRNKTEN GLTPKKKIQV NSKPSIQPKP LLLPAAPKTQ ENSBTAP00000053726/1-579 SAEPLKEDKP IIGPKSKTEN GLTPKKKIQI NSKPSIQPKP LLLPAAPKTQ BACU003839/1-545 SAEPLKEDKP IISPKSKTEN GLTPKKKIQM NSKPSIHPKP LLLPAAPKTQ ENSTTRP00000008064/1-616 SAEPLKEDKP IISPKSKTEN ALTPKKKIQM SSKPSIQPKP LLLPAAPKTQ 201 250 bmy_19874T0/1-326 ---------- ---------- ---------- ---------- ---------- ENSP00000356919/1-670 TNSSVPAKTI IIQTVPTLMP LAKQQPIISL QPAPTKGQTV LLSQPTVVQL ENSBTAP00000053726/1-579 TNPSVPAKTI IIQTLPTLMP LAKQQPIISI HPAPTKGQTV VLSQPTVVQL BACU003839/1-545 TNPSVPAKTI IIQTLPTLMP LAKQQPIISI HPAPTKGQTV VLSQPTMVQL ENSTTRP00000008064/1-616 TNPSVPAKTI IIQTLPTLMP LAKQQPIISI HPAPTKGQTV VLSQPTMVQL 251 300 bmy_19874T0/1-326 ---------- ---------- ---------- ---------- GTLCL----- ENSP00000356919/1-670 QAPGVLPSAQ PVLAVAGGVT QLPNHVVNVV PAPSANSPVN GKLSVTKPVL ENSBTAP00000053726/1-579 QAPGVLPSPQ PVLAVAGATT QLPNHVVNVV PAPVANSPAN GKLSVTKPVL BACU003839/1-545 QAPGVLSPPQ PVLAVAGATT QLPNHVVNVV PAPVANSPVN GKLSVTKPVL ENSTTRP00000008064/1-616 QAPGVLSPPQ PVLAVAGATT QLPNHVVNVV PAPVANSPVN GKLSVTKPVL 301 350 bmy_19874T0/1-326 ---------- IAVLRRQQRM IKNRESACQS RKKKKEYMLG LEARLKAALL ENSP00000356919/1-670 QSTMRNVGSD IAVLRRQQRM IKNRESACQS RKKKKEYMLG LEARLKAALS ENSBTAP00000053726/1-579 QSTMKNVGSD IAVLRRQQRM IKNRESACQS RKKKKEYMLG LEARLKAALL BACU003839/1-545 QSTMRSVGSD IAVLRRQQRM IKNRESACQS RKKKKEYMLG LEARLKAALL ENSTTRP00000008064/1-616 QSTMRSVGSD IAVLRRQQRM IKNRESACQS RKKKKEYMLG LEARLKAALL 351 400 bmy_19874T0/1-326 ENEKLKKENG SLKRQLDEVV SENQRLKVPS PKRRAICVMI VLAFVILNYG ENSP00000356919/1-670 ENEQLKKENG TLKRQLDEVV SENQRLKVPS PKRRVVCVMI VLAFIILNYG ENSBTAP00000053726/1-579 ENEKLKKENG SLKRQLDEVV SENQRLKVPS PKRRAICVMI VLAFVILNYG BACU003839/1-545 ENEKLKKENG SLKRQLDEVV SENQRLKVPS PKRRAICVMI VLAFVILNYG ENSTTRP00000008064/1-616 ENEKLKKENG SLKRQLDEVV SENQRLKVPS PKRRAICVMI VLAFVILNYG 401 450 bmy_19874T0/1-326 PMRYQEGNRK ETGYETHKKE EFALHHYFDI SMLERDSRRM NPGVNPTNQR ENSP00000356919/1-670 PM-------- ---------- ---------- SMLEQDSRRM NPSVSPANQR ENSBTAP00000053726/1-579 PM-------- ---------- ---------- SMLEQDSKRM NPSVNPTNQR BACU003839/1-545 PM-------- ---------- ---------- SMLERDSRRM NPGVNPTNQR ENSTTRP00000008064/1-616 PM-------- ---------- ---------- SMLERDSRRM NPGVNPTNQR 451 500 bmy_19874T0/1-326 RHLLEFSAKE EQDTSDGIIQ KNSYRKLQCA KYYAKCGRGS KEVYVWQTAF ENSP00000356919/1-670 RHLLGFSAKE AQDTSDGIIQ KNSYR----- ---------- ---------- ENSBTAP00000053726/1-579 RHLLGFSAKE EQDTSDDIIQ KNSYR----- ---------- ---------- BACU003839/1-545 RHLLEFSAKE EQDTSDGIIQ KNSYR----- ---------- ---------- ENSTTRP00000008064/1-616 RHLLGFSAKE EQDTSDGIIQ KNSYR----- ---------- ---------- 501 550 bmy_19874T0/1-326 SYKHSEFTKC KAEYDHSVSN DKALMVLTEE PLLYIPPPPC QPLINTTESL ENSP00000356919/1-670 ---------- ---YDHSVSN DKALMVLTEE PLLYIPPPPC QPLINTTESL ENSBTAP00000053726/1-579 ---------- ---YDHSVSN DKALMVLTEE PLLYIPPPPC QPLINTTESL BACU003839/1-545 ---------- ---YDHSVSN DKALMVLTEE PLLYIPPPPC QPLINTTESL ENSTTRP00000008064/1-616 ---------- ---YDHSVSN DKALMVLTEK PLLYIPPPPC QPLINTTESL 551 600 bmy_19874T0/1-326 RLNHELRGWV HRHEVERTKS RRTTNNQQKT RILQGALEQG SNSQLMAVQY ENSP00000356919/1-670 RLNHELRGWV HRHEVERTKS RRMTNNQQKT RILQGALEQG SNSQLMAVQY ENSBTAP00000053726/1-579 RLNHELRGWV HRHEVERTKS RRMTNNQQKT RILQGALEQG SNSQLMAVQY BACU003839/1-545 RLNHELRGWV HRHEVERTKS RRTTNNQQKT RILQGALEQG SNSQLMAVQY ENSTTRP00000008064/1-616 RLNHELRGWV HRHEVERTKS RRTTNNQQKT RILQGALEQG SNSQLMAVQY 601 650 bmy_19874T0/1-326 TETT-SIRM- ---------- ---------- ---------- ---------- ENSP00000356919/1-670 TETTSSISRN SGSELQVYYA SPRSYQDFFE AIRRRGDTFY VVSFRRDHLL ENSBTAP00000053726/1-579 TETT-SISRN SGSELQVYYA SPRSYQDFFE AIRRRGDTFY VVSFRR---- BACU003839/1-545 TETT-SISLE RTLVLMENWN SG-------- ---------- LLSF------ ENSTTRP00000008064/1-616 TETT-SISRN SGSELQVYYA SPRSYQDFFE AIHRRGDTFY VVSFRRDHLL 651 700 bmy_19874T0/1-326 ---------- ---------- ---------- ---------- ---------- ENSP00000356919/1-670 LPATTHNKTT RPKMSIVLPA ININENVING QDYEVMMQID CQVMDTRILH ENSBTAP00000053726/1-579 ---------- ---------- ---------- ---------- ---------- BACU003839/1-545 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008064/1-616 LPATTHNKTT RPKMSIVLPA ININENVING QDYEVMMQID CQVMDTRILH 701 750 bmy_19874T0/1-326 ---------- ---------- ---------- ---------- --- ENSP00000356919/1-670 IKSSSVPPYL RDQQRNQTNT FFGSPPAATE ATHVVSTIPE SLQ ENSBTAP00000053726/1-579 ---------- ---------- ---------- ---------- --- BACU003839/1-545 ---------- ---------- ---------- ------LIQQ QLQ ENSTTRP00000008064/1-616 IKSSSVPPYL RDQQRNQTNT FFGSPPAATE AAHVVSTIPE SLQ