KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:41 2014 Check: 00 .. Name: ENSP00000276173/1-151 Len: 215 Check: 3108 Weight: 1.00 Name: ENSBTAP00000053728/1-182 Len: 215 Check: 136 Weight: 1.00 Name: bmy_20187T0/1-164 Len: 215 Check: 3129 Weight: 1.00 Name: ENSTTRP00000007133/1-152 Len: 215 Check: 7144 Weight: 1.00 Name: BACU007391/1-200 Len: 215 Check: 168 Weight: 1.00 // 1 50 ENSP00000276173/1-151 MDSA------ ACAAAATPVP ALALALAPDL AQAPLALPGL LSPSCLLSSG ENSBTAP00000053728/1-182 MDP------- PAPAAATP-- ALALASTPAL AQDSLALPYL GNPLPLLSSG bmy_20187T0/1-164 ---------- MGPAARAP-- --APASAPAL AQGPLVLPGL GNPSPLLSSG ENSTTRP00000007133/1-152 GDPTGRDTLR MDPVARAPAP ALAPASAPAL AQGPLALPGL GNPSPLLSSR BACU007391/1-200 ---------- MDPAACAP-- --APASAPAL AQGPLVLPGL GNPSPLLSSG 51 100 ENSP00000276173/1-151 QEVNGSERGT CLWRPWLSST NDSPRQMRKL VDLAAGGATA AEVTKAESKF ENSBTAP00000053728/1-182 QEVNKHERGA CLWRPWLTST NDLPRQVRKR VDLAPGGTTG AKVTKVDFEF bmy_20187T0/1-164 QEVDRSERGA CPWRPWLSAT NDLPRQVRKP VDLWGPC--- ---------F ENSTTRP00000007133/1-152 QEVDRSERGA CLWRPWLSST NDLPRQVRKP VDLAAGGATG AEVTKVDSEF BACU007391/1-200 QEVDRSERGA CPWRPWLSAT NDFPRQVRKP VDLAAAGATG AEVTKVDSEF 101 150 ENSP00000276173/1-151 HHPVRLFWPK SRSFDYLYSA GEILLQNFPV QATINLYEDS DSEEEEEDEE ENSBTAP00000053728/1-182 HHPVRLFWPK SCSFDYLYSD GEILLKNFPV QATINLYEDS TSEEEEEVEE bmy_20187T0/1-164 FSVHRLFWPK SRSFDYLYSD GEILLQNFPV QATINLYEDS AS-EEEEDEE ENSTTRP00000007133/1-152 HHPVRLFWPK SRSFDYLYSD GEILLQNFPV QATINLYEDS AS-EEEEDKE BACU007391/1-200 HHPVRLFWPK SRSFDYLYSD GEILLQNFPV QATINLYEDS AS-EEEEDEE 151 200 ENSP00000276173/1-151 QEDEEEK--- ---------- ---------- ---------- ---------- ENSBTAP00000053728/1-182 REEEEKEEAD GKGPEG---- ---------- ----CVKVPG SAPHRATAHS bmy_20187T0/1-164 EEDEEKEGAD EKGPEG---- ---------- ----CVKAPG PAPHGASAPR ENSTTRP00000007133/1-152 EEE------- ---------- ---------- ---------- ---------- BACU007391/1-200 EEDEEKEGAD EKGPEGKGDF LGRPKGYLPF HCFKSEKSKG LKPKSFVKKE 201 250 ENSP00000276173/1-151 ---------- ----- ENSBTAP00000053728/1-182 PSLPLTCPN- ----- bmy_20187T0/1-164 PSLLLTCPN- ----- ENSTTRP00000007133/1-152 ---------- ----- BACU007391/1-200 APMDDFSPQF PKSTD