KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:21:45 2014 Check: 00 .. Name: ENSTTRP00000005136/1-1321 Len: 1395 Check: 2353 Weight: 1.00 Name: ENSBTAP00000053735/1-1372 Len: 1395 Check: 8933 Weight: 1.00 Name: bmy_08357T0/1-1225 Len: 1395 Check: 3688 Weight: 1.00 Name: BACU013222/1-1197 Len: 1395 Check: 3034 Weight: 1.00 // 1 50 ENSTTRP00000005136/1-1321 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053735/1-1372 MVVLRSSLEL QSHPAASATD SLDLSSEFLS LEQIGRRRLR SAGAAEQSAV bmy_08357T0/1-1225 ---------- ---------- ---------- ---------- ---------- BACU013222/1-1197 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005136/1-1321 ------DGSS VKEVETYHRT RALRCLRKNA QNSSDSSFDK NMEITEKHTN ENSBTAP00000053735/1-1372 TAAAAGDGSS VKEVETYHQT RTLRSLRKNA QNSSDSSFDK NTVITEKHAN bmy_08357T0/1-1225 ---------- ---------- ---------- ---------- ---------- BACU013222/1-1197 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005136/1-1321 GRHFTRQLAR QQADKKKEEC KEDKVITVTR SLRTRNIVQK TERLHEENGD ENSBTAP00000053735/1-1372 GRHFTRQLAR QQADKKKEEC KEDKAIAVTR SLRTRSIVQK TEHLHEESGD bmy_08357T0/1-1225 ---------- ---------- ---------- ---------- ---------- BACU013222/1-1197 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000005136/1-1321 VEVRRSCRIR SRYGSVNQSV LFDKLITNTA EAVLQKMDDM KKMRRQRMRE ENSBTAP00000053735/1-1372 VEVRRSCRIR SRYGSVNQSV LFDKLITNTA EAVLQKMDDM EKQRRRRMRK bmy_08357T0/1-1225 ---------- -----MNQSV LFDKLITNTA EAVLQKMDDM KKMRRQRLRE BACU013222/1-1197 ---------- --MVVLRSSL ELHSHPAASA TDSLDLSSEF LSLKQIGRRR 201 250 ENSTTRP00000005136/1-1321 LEDLGVFNET EEGNL--NMY TRGKQKDIQR TDEETTDNQE GSVXXXXXXX ENSBTAP00000053735/1-1372 LEDLEVFNET EEGNL--NMY TRGKQKDIQR TDEETTDNQE GSVESSEEGE bmy_08357T0/1-1225 LEDLGVFNET EEGNL--NMY TRGKQKAIQR TDEETTDNQE GSVESSEEGE BACU013222/1-1197 LRSAGAAEQS ADGSSVKEVE TYHRTRALRS VRKNAQNSSD SSF------- 251 300 ENSTTRP00000005136/1-1321 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ENSBTAP00000053735/1-1372 DQEDEDEDDE EEED------ ------DDDD EDEEDVEEDN QKRYYLRQ-- bmy_08357T0/1-1225 DQEDEDDGED EDDDEEDDDE EDDDDEDDDD EDEEDGEEDN QKRYYLRQ-- BACU013222/1-1197 ---------- ---------- ---------D KNTEISEKHT NGRHFTRQLA 301 350 ENSTTRP00000005136/1-1321 XXXXXXXXXX XXXXPRHQRK PNIFYSGPAS PKRPRYRLSS AGPRSPYCKR ENSBTAP00000053735/1-1372 -RKATVYYQA PLEKPRHQRK PKIFYTGPAS PARPRYRLSS AGPRSPYCKR bmy_08357T0/1-1225 -RKATVYYQA PLEKPRHQRK PNIFYSGPAS PTRPRYRLSS AGPRSPYCKR BACU013222/1-1197 RQQADKKKEE CKEEPRHQRK PNIFYSGPAS PTRPRYRLSS AGPRSPYCKR 351 400 ENSTTRP00000005136/1-1321 MNXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXC LPLNFRKDEL ENSBTAP00000053735/1-1372 MNRRRHAIHS SDSTSSSSSE DEQQFERRRK RSRNRAINRC LPLNFRKDEL bmy_08357T0/1-1225 MNRRRHAIHS SDSTSSSSSE DEQHFERRRK RSRNRAINRC LPLNFRKDEL BACU013222/1-1197 MNRRRHAIHS SDSTSSSSSE DEQHFERRRK RSRNRAINRC LPLNFRKDEL 401 450 ENSTTRP00000005136/1-1321 KGIYKDGMKI GGSLADVDLM QVDSSVRFDS VGGLSNHIAA LKEMVVFPLL ENSBTAP00000053735/1-1372 KGIYKDRMKI GASLADVDPM QLDSSVRFDS VGGLSNHIAA LKEMVVFPLL bmy_08357T0/1-1225 KGIYKDRMKI GGSLADVDPM QLDSSVRFDS VGGLSNHIAA LKEMVVFPLL BACU013222/1-1197 KGIYKDRMKI GGSLADVDPM QLDSSVRFDS VGGLSNHIAA LKEMVVFPLL 451 500 ENSTTRP00000005136/1-1321 YPEVFEKFKI QPPRGCLFYG PPGTGKTLVA RALANECSQG DKRVAFFMRK ENSBTAP00000053735/1-1372 YPEVFEKFKI QPPRGCLFYG PPGTGKTLVA RALANECSQG DKRVAFFMRK bmy_08357T0/1-1225 YPEVFEKFKI QPPRGCLFYG PPGTGKTLVA RALANECSQG HKRVAFFMRK BACU013222/1-1197 YPEVFEKFKI QPPRGCLFYG PPGTGKTLVA RALANECSQG HKRVAFFMRK 501 550 ENSTTRP00000005136/1-1321 GADGLSKWVG ESERQLRLLF DQXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053735/1-1372 GADCLSKWVG ESERQLRLLF DQAYQMRPSI IFFDEIDGLA PVRSSRQDQI bmy_08357T0/1-1225 GADCLSKWVG ESERQLRLLF DQAYQMRPSI IFFDEIDGLA PVRSSRQDQI BACU013222/1-1197 GADCLSKWVG ESERQLRLLF DQAYQMRPSI IFFDEIDGLA PVRSSRQDQI 551 600 ENSTTRP00000005136/1-1321 XXSIVSTLLA LMDGLDSRGE IVIIGATNRL DSIDPALRRP GRFDREFLFS ENSBTAP00000053735/1-1372 HSSIVSTLLA LMDGLDSRGE IVVIGATNRL DSIDPALRRP GRFDREFLFS bmy_08357T0/1-1225 HSSIVSTLLA LMDGLDSRGE IVIIGATNRL DSIDPALRRP GRFDREFLFS BACU013222/1-1197 HSSIVSTLLA LMDGLDSRGE IVIIGATNRL DSIDPALRRP GRFDREFLFS 601 650 ENSTTRP00000005136/1-1321 LPDKDARKEI LKIHTRDWNP KPLDIFLEEL AENCAGYCGA DIKSICSEAA ENSBTAP00000053735/1-1372 LPDKDARKEI LKIHTRDWNP KPLDMFLEEL AENSVGYCGA DIKSVCSEAA bmy_08357T0/1-1225 LPDKDARKEI LKIHTRDWNP KPLDTFLEEL AENCVGYCGA DIKSICSEAA BACU013222/1-1197 LPDKDARKEI LKIHTRDWNP KPLDTFLEEL AENCVGYCGA DIKSICSEAA 651 700 ENSTTRP00000005136/1-1321 LCALRRRYPQ IYTTSEKLQL DLSSINISAK DFEVAMQKMI PASRRAVTSP ENSBTAP00000053735/1-1372 LCALRRRYPQ IYTTSEKLQL DLSSINISAK DFEVAMQKMI PASQRAVTSP bmy_08357T0/1-1225 LCALRRRYPQ IYTTSEKLQL DLSSINISAK DFEVAMQKMI PASQRAVTSP BACU013222/1-1197 LCALRRRYPQ IYTTSEKLQL DLSSINISAK DFEVAMQKMI PASQRAVTSP 701 750 ENSTTRP00000005136/1-1321 GQALSAIVKP LLQSTVDKIL EALQRVFPHV EIGTKKALDS DISCPLLESD ENSBTAP00000053735/1-1372 GQALSTIVKP LLQSTVHKIL EALQRVFPHA ETRTNKALDS DISCPLLESD bmy_08357T0/1-1225 GQALSTIVKP LLQSTVHKIL EALQRVFPQA EIRTKKALDS DISCPLLESD BACU013222/1-1197 GQALSTIVKP LLQSTVHKIL EALQRVFPQA EIRTKKALDS DISCPLLESD 751 800 ENSTTRP00000005136/1-1321 LAYSDDDVPS VYENGLSQKS FNKGKENVNF LHLNRNTCYQ PMSFRPRILI ENSBTAP00000053735/1-1372 LAYSDDDVPS VYENGLSQKS FNKAKENFNF LHLNRNACYQ PMSFRPRMLI bmy_08357T0/1-1225 LAYSDDDVPS VYENGLSQKS FNKAKENFNF LHLNRNACFQ PMSFRPRILI BACU013222/1-1197 LAYSDDDVPS VYENGLSQKS FNKAKENFNF LHLNRNACYQ PMSFRPRILI 801 850 ENSTTRP00000005136/1-1321 VGEPGFGQGS HLAPAVIHAL EKFAVYTLDI PVLFGVSATS PEETCAQMIH ENSBTAP00000053735/1-1372 VGEPGFGQGS HLAPAVIHAL EKFTVYTLDI PVLFGVSATS PEETCAQVIR bmy_08357T0/1-1225 VGEPGFGQGS HLAPAVIHAL EKFAVYTLDI PVLFGVSATS PEETCAQMIR BACU013222/1-1197 VGEPGFGQGS HLAPAVIHAL EKFAVYTLDI PVLFGVSATS PEETCAQMIR 851 900 ENSTTRP00000005136/1-1321 EAKKTAPSIV YIPHIHLWWE IVGPTLKATF TTLLQNIPSF APVLLLATSD ENSBTAP00000053735/1-1372 EAKRTAPSIV YVPHIHLWWE IVGPTLKATF TTLLQNIPSF APVLLLATSD bmy_08357T0/1-1225 EAKKTAPSIV YVPHIHLWWE IVGPTLKATF TTLLQNIPSF APVLLLATSD BACU013222/1-1197 EAKKTAPSIV YVPHIHLWWE IVGPTLKATF TTLLQNIPSF APVLLLATSD 901 950 ENSTTRP00000005136/1-1321 KPHSTLPEEV QELFVHDYGE IFNVQLPNKE ERTQFFEDLI LKQAAKPPIS ENSBTAP00000053735/1-1372 KPHSTLPEEV QELFIHDYGE IFNVQLPSKE ERTQFFEDLI LKQAAKPPIS bmy_08357T0/1-1225 KPHSTLPEEV QELFIHDYGE IFNVQLPGKE ERTQFFEDLI LKQAAKPPIS BACU013222/1-1197 KPHSTLPEEV QELFIHDYGE IFNVQLPGKE ERTQFFEDLI LKQAAKPPIS 951 1000 ENSTTRP00000005136/1-1321 KKKAVLQALE VLPVAPPPEP RPLTAEEVKR LEEQEEDTFR ELRIFLRNVT ENSBTAP00000053735/1-1372 KKKAVLQALE VLPVAPPPEP RPLTAEELKR LEEQEEDTFR ELRIFLRNVT bmy_08357T0/1-1225 KKKAVLQALE VLPVAPPPEP RPLTAEEVKQ LEEQEEDTFR ELRIFLRNVT BACU013222/1-1197 KKKAVLQALE VLPVAPPPEP RPLTAEEVKR LEEQEEDTFR ELRIFLRNVT 1001 1050 ENSTTRP00000005136/1-1321 HRLAIDKRFR IFTKPVDPDE VPDYVTVIKQ PMDLSSVISK IDLHKYLTVK ENSBTAP00000053735/1-1372 HRLAIDKRFR IFTKPVDPDE VPDYVTVIKQ PMDLSSVISK IDLHKYLTVK bmy_08357T0/1-1225 HRLAIDKRFR IFTKPVDPDE VPDYVTVIKQ PMDLSSVISK IDLHKYLTVK BACU013222/1-1197 HRLAIDKRFR IFTKPVDPDE VPDYVTVIKQ PMDLSSVISK IDLHKYLTVK 1051 1100 ENSTTRP00000005136/1-1321 DYLSDIDLIC SNALEYNPDR DPGDRLIRHR ACALRDTAYA IIKEELDEDF ENSBTAP00000053735/1-1372 DYLSDIDLIC SNALEYNPDR DPGDRLIRHR ACALRDTAYA IIKEELDEDF bmy_08357T0/1-1225 DYLSDIDLIC SNALEYNPDR DPGDRLIRHR ACALRDTAYA IIKEELDEDF BACU013222/1-1197 DYLSDIDLIC SNALEYNPDR DPGDRLIRHR ACALRDTAYA IIKEELDEDF 1101 1150 ENSTTRP00000005136/1-1321 ERLCEEIQES RKKRGCSSSK YAPSYYHVMP KQNSTPAGER RPDPEKNEKL ENSBTAP00000053735/1-1372 EQLCEEIQES RKKRGCSSSK YAPSYYHVMP KQNSTPAGDK KSDPEQSEKP bmy_08357T0/1-1225 EQLCEEIQES RKKRGCSSSR YAPSYYHVMP KQNSTPAGDR RPDPEQNEKL BACU013222/1-1197 EQLCEEIQES RKKRGCSSSR YAPSYYHVMP KQNSTPAGDR RPDPEQNEKL 1151 1200 ENSTTRP00000005136/1-1321 KTPSTPVACS TPAPLKRKIR RKSKWYLGTI TKRRRISRAK DDGQNVVDDK ENSBTAP00000053735/1-1372 NRPSTPMACS TPAQLKRKVR KKSKWYLGTI TKRRKISQAK DDSQNVTGDK bmy_08357T0/1-1225 KTPSTPMACS TPAQLKRKIR KKSKWYLGTI TKRRRISQAK DDGQNVVDDK BACU013222/1-1197 KTPSTPMACS TPAQLKRKIR KKSKWYLGTI TKRRRISQAK DDGQNVVDDK 1201 1250 ENSTTRP00000005136/1-1321 IENDTEENQD TSVDHNAAGD IGESSIEENE KQQNASESKM ELGNNYSSTC ENSBTAP00000053735/1-1372 IESDTEENQD TSVDHNETGN TGESSMEE-- ---NASESKI ELENNNSSPC bmy_08357T0/1-1225 IESDTEENQD TSVDHNEAGN TGESSMEENE KQQNASESKI ELGNNNSSTC BACU013222/1-1197 IESDTEENQD TSVDHNEAGN TGESSMEENE KQQNASESRI ELGNNNSSTC 1251 1300 ENSTTRP00000005136/1-1321 FENQVEESGK TIACTELRKD KITCNGDASG SEIADTSDEN EAKEMCVLRM ENSBTAP00000053735/1-1372 IENEPEESGK TTACTELRKD KIACNGDASS SRIIDIFDEN ETKEMCVLRM bmy_08357T0/1-1225 FENQLEESGK TIACTELRKD KIACNGDASG SQITDISDEN EAKEMCVLRM BACU013222/1-1197 FENQLEESGK TRACTELRKD KIACNGDASG SQITDISDEN EAKEMCVLRM 1301 1350 ENSTTRP00000005136/1-1321 TRARRSQVEQ QQLISVEKAL AILSQPTPSL VVDHKQLKNL LKTVVRKSQE ENSBTAP00000053735/1-1372 TRARRSQVEQ QQLISVEKAL AILSQPTPSL VVDHERLKNL LKIVVKKSRE bmy_08357T0/1-1225 TRARRSQVEQ QQLICVEKAL AILSQPTPSL VVDPERLKNL LKTVVRKSQE BACU013222/1-1197 TRARRSQVEQ QQLISVEKAL AILSQPTPSL VVDPERLKNL LKTVVRKSQE 1351 1400 ENSTTRP00000005136/1-1321 YNISQLENLY AVISQCIYQH RRDYDKTTLI Q--------- ----- ENSBTAP00000053735/1-1372 YNIFQLENLY AVISQCIYQH RRDYDKTALI QKMEQEVENF SCSR- bmy_08357T0/1-1225 YNIFQLENLY AVISQCIYQH RRDYDKTTLI QKMEQEIENF SCSRS BACU013222/1-1197 YNIFQLENLY AVISQCIYQH RRDYDKTTLI QKMEQEIENF SCSRS