KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:21:46 2014 Check: 00 .. Name: ENSTTRP00000000026/1-1699 Len: 1724 Check: 2746 Weight: 1.00 Name: ENSBTAP00000053737/1-1723 Len: 1724 Check: 5639 Weight: 1.00 Name: bmy_05591T0/1-1030 Len: 1724 Check: 9705 Weight: 1.00 Name: BACU010070/1-1723 Len: 1724 Check: 2288 Weight: 1.00 // 1 50 ENSTTRP00000000026/1-1699 MRTRWATPLR AAELLVLLLP CFGLVEPSDR SGNDSFTIVN ENTGKCITPL ENSBTAP00000053737/1-1723 MRTRWATPRR AAELLMLLLP GFGLVEPSGH SGNDPFTIVN ENTGKCITPL bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 MRTRWANPLR AAELLVLLLP CFGLVEPSGR SGNDSFTIVN ENTGKCITPL 51 100 ENSTTRP00000000026/1-1699 NDWIVAKDCD ETKDMLWKWV SQHRLFHLQS QKCLGLDITK PVDTLRMFSC ENSBTAP00000053737/1-1723 NDWIVVKDCD ETKDMLWKWV SQHRLFHLQS QKCLGLDITK PTDSLRMFSC bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 NDWIVAKDCD ETKDMLWKWV SQHRLFHLQS QKCLGLDITK PTDSLRMFRC 101 150 ENSTTRP00000000026/1-1699 DSNAMLWWKC EHHSLYGAAQ YRLTLKGGHA IASTNSSDVW KKGGSEENLC ENSBTAP00000053737/1-1723 DSNAMLWWKC EHHSLYGAAQ YQLALRDGHA IASTNSSDVW KKGGSEENLC bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 DANAMLWWKC EHHSLYGAAQ YRLTLKGGHA IASTNSSDVW KKGGSEENLC 151 200 ENSTTRP00000000026/1-1699 AQPYHEIYTR DGNSYGRPCE FPFLVNGTWH HECIHDGDRS GPWCATTLNY ENSBTAP00000053737/1-1723 AQPYHEIYTR DGNSFGRPCE FPFLVNGTWH HECIFDGDRS GPWCATTLNY bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 AQPYHEIYTR DGNSYGRPCE FPFLVNGTWH HECIHDEDRG GPWCATTLDY 201 250 ENSTTRP00000000026/1-1699 EYDQKWGICL QPENGCEDNW EKKEEMGSCY QFNTQATLSW KEAYVSCQNQ ENSBTAP00000053737/1-1723 EYDQQWGICL QPESGCEDNW EKNEEIGSCY QFNIQATLSW KEAYVSCQNQ bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 GYDQKWGICL QPENGCEDNW EKKEEMGSCY QFNTQATLSW KKAYVSCQNQ 251 300 ENSTTRP00000000026/1-1699 GADLLSINSA AELTYLTEKE GIPRIFWIGL NQLYSARGWE WSDHKPLNFL ENSBTAP00000053737/1-1723 GADLLSINSA AELTYLKGKE GIARIFWIGL NQLYSARGWE WSDHRPLNFL bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 EADLLSINSA AELTYLKEKE GIPRIFWIGL NQLYSARGWE WSDHKPLNFL 301 350 ENSTTRP00000000026/1-1699 NWDPDVPSAP IIDRSSCARM DADSGLWQSF SCEAQLPYVC KKLLNNTVEL ENSBTAP00000053737/1-1723 NWDPDVLMTP IIGRSSCARM DADSGLWQSF SCEAQLPYVC EKLLNSTVEL bmy_05591T0/1-1030 ---------- ---------- ---------- -------MLC SNFLNTS--- BACU010070/1-1723 NWDPDVPRAP IIDRSSCARM DADSGLWQSF SCEAQLPYVC KKLLNNTVEL 351 400 ENSTTRP00000000026/1-1699 TDVWTYSDTR CDAADWLPNN GFCYLLVNES DSWDKAHMKC KTFSSDLISI ENSBTAP00000053737/1-1723 TDMWTYSDTH CDAADWVPND GFCYLLVNES DSWDKAHTTC QTFSSDLISI bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 TGVWTYSDTR CDSADWLPNN GFCYLLVNES DSWDKAHMKC KTFSSDLISI 401 450 ENSTTRP00000000026/1-1699 HSLADVELIV TELHNGDAKE EVWTGLRNIN TPTLFQWSDG TEVTLTYWDE ENSBTAP00000053737/1-1723 HSLADVEVVV TKLHNGDAEG EMWTGLRNIN TPALFQWSDG TEVTLTYWDE bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 HSLADVELVV TKLHNGDAKE EIWTGLRNIN TPTLFQWSDG TEVTLTYWDE 451 500 ENSTTRP00000000026/1-1699 NEPHVPYNKT PNCVSYLGKL GQWKVQSCEE KLKYVCKKKG EKLNDTRSDK ENSBTAP00000053737/1-1723 NEPRVPYNET PNCVSYSGKL GQWKVQSCEE KLKYVCKKKG EKLNDTRSDK bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 NEPYVPYNNT PNCVSYLGKL GQWKVQSCEE KLKYVCKKKG EKLNDTRSDK 501 550 ENSTTRP00000000026/1-1699 MCPPDEGWKR HGEACYKIYK DEVPFGTNCN LTVTSRFEQE YLNDMIKKYT ENSBTAP00000053737/1-1723 ICPPEEGWKR HGETCYKIYK DEVPFGTNCN LTITSRFEQE YLNDMIKKHT bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 MCPPGEGWKR HGEACYKIYK DEVPFGTNCN LTVTSRFEQE YLNDMIKKYT 551 600 ENSTTRP00000000026/1-1699 KSPEKYFWTG LRDTDASGEY SWGSAGGIKR AVTFSNWNFL EPASPGGCVA ENSBTAP00000053737/1-1723 MSPEKYFWTG LRDTDANGEY SWASVGGVKR AVTFSNWNFF EPASPGGCVV bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 KSPEKYFWTG LRDIDASGEY SWGSAGGIKR AVTFSNWNFL EPASPGGCVA 601 650 ENSTTRP00000000026/1-1699 MATGKSLGKW EVKDCRSFRA LSICKKISEH PEPEKAAPKP EDPCPEGWHS ENSBTAP00000053737/1-1723 MATGKSLGKW EVKDCRSFRA LSICKKMSQH SEPEKAAPKP EDPCPEGWHS bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- ---------- BACU010070/1-1723 MATGKSLGKW EVKDCRSFRA LSICKKISEA PEPEEAAPKP EDPCPEGWHS 651 700 ENSTTRP00000000026/1-1699 FPSGLSCYKL FHIERIVRKR NWEEAERFCQ ALGGHLPSFS HMDEIKKFLH ENSBTAP00000053737/1-1723 SPSGLSCYKL FHRERIVRKR NWEEAERFCQ ALGGHLPSFS HMDEIKEFLH bmy_05591T0/1-1030 ---------- ---------- ---------- ---------- -------FLH BACU010070/1-1723 FPSGLSCYKL FHIERIVRKR NWEEAERFCQ ALGGHLPSFS HMDEIKKFIH 701 750 ENSTTRP00000000026/1-1699 FLTDQFSDQR WLWIGLNKRS PDLQGSWQWS DHTPXXXXXX XXXXXXXXXX ENSBTAP00000053737/1-1723 FLIEQFSDQR WLWIGLNKRS PDLQGSWQWS DHTPVSTIIT ANEFQQDYDI bmy_05591T0/1-1030 ------SDQR WLWIGLNKRS PDLQGSWQWS DHTPVSTIIM ANEFQQDYDI BACU010070/1-1723 FLTDQFSDQR WLWIGLNKRS PDLQGSWQWS DHTPVSTIIT ANEFHQDYDF 751 800 ENSTTRP00000000026/1-1699 XXXXXXXVIN RPWRRRWYFY DDREFIYLRP FACDTKLEWM CQIPKGRTPK ENSBTAP00000053737/1-1723 RDCAAVKVMQ RPWRRSWYFY DDREYMNLRP FACDAKLEWV CQIPKGHTLK bmy_05591T0/1-1030 RDCAAVKVIN RPWRRRWYFY DDREFIYLRP FACDTKLEWM CQIPKGRTPK BACU010070/1-1723 RDCGAVKVID RPWRRRWYFY DDREFIYLRP FACDAKLEWT CQVPKGRTPK 801 850 ENSTTRP00000000026/1-1699 MPDWYNPERA GIHGPPVVIE GSEYWFVADP RLNYEEAVLY CASNHSSLAS ENSBTAP00000053737/1-1723 IPDWYNPERA GIHGPPVVVE GSEYWFVADP RLSYEEAVLY CDSNHSSLAS bmy_05591T0/1-1030 IPDWYNPERA GIHGPPVVIE GSEYWFVADP RLNYEEAVLY CASNHSSLAX BACU010070/1-1723 IPDWYNPERA GIHGPPVVIE GSEYWFVADP RLNYEEAVLY CASNHSSLAS 851 900 ENSTTRP00000000026/1-1699 VTSFAGLRAI KNKIANISGD EEKWWVRTTD QLIERRFLSS RHPFHHFPIT ENSBTAP00000053737/1-1723 LTSFTGLRAI KNKIANISSD EQKWWVRTTE QLKSHRFIYS RDPWHHFPIM bmy_05591T0/1-1030 LTSFAGLRAI KNKIANISGD EEKWWVRTTD QLIEHRFMHS RYPWHHFPIT BACU010070/1-1723 LTSFAGLRAI KNKIANISGD EEKWWVRTTD QLIEHRFMHS RYPWHHFPIT 901 950 ENSTTRP00000000026/1-1699 FGEECFYLSA KTWF------ ---------- -------SVE KYSPDSAAKI ENSBTAP00000053737/1-1723 FGEECFYLSA KTWFNDLRKP ADCSTNLPFV CEKHNVSSLE KYSPDSAAKV bmy_05591T0/1-1030 FGEECFYLSA KTWFSDLNKP ADCSTKLPFV CEKYNVSSLE KYSPDSAAKI BACU010070/1-1723 FGEECFYLSA KTWFSDLNKP ADCSTKLPFI CEKYNVSSLE KYSPDSAAKI 951 1000 ENSTTRP00000000026/1-1699 QCSGDWITFQ NKCFLRIKPK SLTFSEASDT CHTYGGTLPS VLSQREQDFI ENSBTAP00000053737/1-1723 QCSGDWITFQ NKCFLRINPK SVTFSEASDI CHTYGGTLPS VLSQREQDFI bmy_05591T0/1-1030 QCSGDWITFQ NKCFLRIKPK SLTFSEASDA CHTYGGTLPS VLSQREQDFI BACU010070/1-1723 QCSGDWITFQ NKCFLRIKPK SVTFSEASDA CHTYGGTLPS VLSQREQDFI 1001 1050 ENSTTRP00000000026/1-1699 TSLLPDMEAT LWIGLRWTAY EKINKWMDNR ELTYSNFHPL LVGRRLRIPT ENSBTAP00000053737/1-1723 TSLFPDMEAS LWIGLRWTAY EKIKKWMDNR ELTYSNFHPL LVGRRLRIPP bmy_05591T0/1-1030 TSLLPDMEAT LWIGLRWTAY EKINKWMDNR ELTYSNFHPL LVGRRLRIPT BACU010070/1-1723 TSLLPDMEAT LWIGLRWTAY EKINKWMDNR ELTYSNFHPL LVGRRLRIPT 1051 1100 ENSTTRP00000000026/1-1699 NIFDEEGSYH CALMLNLQKS PFTGTWNFTS CSEHHTLSLC QKYSEIESRQ ENSBTAP00000053737/1-1723 NIFDEEASYH CAVMLNLQKS PFTGMWNFTS CSEHHTLSLC QKYSEIESRQ bmy_05591T0/1-1030 NIFDEELSYH CALMINLQKS PFTGTWNFTS CSEHHTLSLC QKYSEIESRQ BACU010070/1-1723 NIFDEELSYH CALMLNFQKS PFTGTWNFTS CSEHHTLSLC QKYSEIESRQ 1101 1150 ENSTTRP00000000026/1-1699 TLQNTSETVK YQNNLYKIML KTLTWTDALK ECQKENMQLV SITDPYQQAF ENSBTAP00000053737/1-1723 TLWNTTETMK YQNNLYKIIL KTLTWTDALR ECQKENMRLV SITDPYQQAF bmy_05591T0/1-1030 TLQNTSETMK YQNNLYKIIL KTLTWTDALK ECQKENMHLV SITDPYQQAF BACU010070/1-1723 TLQNTSETMK YQNNLYKIIL KTLTWTDALK ECQKENMHLV SITDPYQQAF 1151 1200 ENSTTRP00000000026/1-1699 LTVQAVLHNT SLWIGLSSHD XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053737/1-1723 LTVQAVVRNS SLWIGLSSHD DELNFGWSDG KHLQFSRWAE NNEQLEDCVV bmy_05591T0/1-1030 LTVQAVLHNS SLWIGLSSYD DELNFGWSDG KHLQFSRWAE NNEQLEDCVV BACU010070/1-1723 LTVQAVLHNS SLWIGLSSHD DELNFGWSDG KHLQFSRWAE NNEQLEDCVV 1201 1250 ENSTTRP00000000026/1-1699 XXXXXXXXXX XXXXXXXXXX XXXXXXETEK EVKPVNSVRC PSPVLNTPWI ENSBTAP00000053737/1-1723 LDTDGFWKTS DCDNNQPGAI CYYSGNETKK EVKPVASFQC PSPVLSTPWI bmy_05591T0/1-1030 LDTDGFWKTS DCDNNQPGAI CYYSGNETEK EVKPVNSVQC PSPVLNTPWI BACU010070/1-1723 LDTDGFWKTS DCDNNQPGAI CYYSGNETEK EVKPVNSVQC PSPVLNTPWI 1251 1300 ENSTTRP00000000026/1-1699 PFENSCYNFM ITKNRYIVTT RDEVHSQCQT LNPKSHILSI RDEKENNFVL ENSBTAP00000053737/1-1723 PFQNSCYNFL ITENRYRVPT QDEVHSKCKT LNPKSHILSI RDEKENNFVL bmy_05591T0/1-1030 PFQNSCYNFM ITKNRYIVTT QDEVHSKCQT LNPKSHILSI RDEKENNFVL BACU010070/1-1723 PFQNSCYNFM ITKNRYIVTT QDEVHSKCQT LNPKSHTLSI RDEKENNFVL 1301 1350 ENSTTRP00000000026/1-1699 EQLLRYHYMA SWVMLGITYE NNSLMWSDKT TLSYTHCRSG RPAVKNDKFF ENSBTAP00000053737/1-1723 EQLLHYNYMA SWVILGITYE NNSLRWSDKT TLSYTHWRSG RPAIKDGKFI bmy_05591T0/1-1030 EQLLHYNYMA SWVMLGITYE NNSLMWSDKT TLSYTHWRSG RPAVKNGKFF BACU010070/1-1723 EQLLHYNYMA SWVMLGITYE NNSLMWSDKT TLSYTHWRSG RPAVKNGKFF 1351 1400 ENSTTRP00000000026/1-1699 AGLNTDGFLX XXXXXXXXXX XXXXXXXXXX XXXXXXXDYK EDYNTTLPRF ENSBTAP00000053737/1-1723 AGLSTDGF-W DIQTFNVVGD LLYFHQHSIL ACKIEMVDYK EEYNTTLPQF bmy_05591T0/1-1030 AGLNTDGF-W DIQTFNIVED ILYFHQHSIL ACKIEMVDYK EDYNTTLPRF BACU010070/1-1723 AGLNTDGF-W DIQTFNIVED ILYFHQHSIL ACKIEMVDYK EDYNTTLPRF 1401 1450 ENSTTRP00000000026/1-1699 IPHEGGIYNV IKKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053737/1-1723 IPYEDGIYNV IQKKVTWYGA LNACSQSGGH LASVHDQNGQ LFLEDIVKRD bmy_05591T0/1-1030 IPYEDGIYNV IQKRVTWYEA LNTCSQSGGH LASVHDQNGQ LFLEDIVKRD BACU010070/1-1723 IPYEDGIYNV IQKRVTWYEA LNTCSQSGGH LASVHDQNGQ LFLEDIVKRD 1451 1500 ENSTTRP00000000026/1-1699 XXPLWVGLSS HDGSESSFEW SDGSAFDYIP WKDKKSAGNC VVLDPKGIWK ENSBTAP00000053737/1-1723 GFPLWVGLSS HDGSESSFEW SDGSAFDYIP WKDKKSAGNC VVLDPKGIWK bmy_05591T0/1-1030 GFPLWVGLSS HDGSESSFEW SDGSAFDYIP WKDKKSAGNC VVLDPKGIWK BACU010070/1-1723 GFPLWVGLSS HDGSESSFEW SDGSAFDYIP WKDKKSAGNC VVLDPKGIWK 1501 1550 ENSTTRP00000000026/1-1699 HEKCNSVKDG AICYKPTKSK EVSSPTYSSR CPAVKGNKSQ WIQYRDHCYT ENSBTAP00000053737/1-1723 HENCKSVKDG AICYKPTESK EVSSYTYSSR CPGVKGNKSQ WVQYRDHCYT bmy_05591T0/1-1030 HEKCNSVKDG AICYKSTKPK EVSSRTYSSR CPAVKGNDSQ WIQYRDHCYT BACU010070/1-1723 HEKCNSVKDG AICYKSTKPK EVSSHTYSSR CPAVKGNESQ WIQYRDHCYT 1551 1600 ENSTTRP00000000026/1-1699 SDQALHSFSE ARRFCSELDH SATIVTIKDE DENKFVSRLM RENNNITMRV ENSBTAP00000053737/1-1723 SDQALHSFSE ARQFCSKLAH SATVVTIKDE DENKFVSRLM RENNNITMRV bmy_05591T0/1-1030 SDQALHSFSE ARRFCSELDH SATIVTIKDE DENKFVSRLM RENNNITMRV BACU010070/1-1723 SDQALHSFSE ARRFCSELDH SATIVTIKDE DENKFVSRLM RENNNITMRV 1601 1650 ENSTTRP00000000026/1-1699 WLGLSQLSAD QSWN-LYGSK VTFVKWANNH NSGNGQCTIL ISSNDTWIKV ENSBTAP00000053737/1-1723 WLGLSQLSAD HSWNWLDGSK VTFVKWANKI KSGSGQCSIL LASNETWTKV bmy_05591T0/1-1030 WLGLSQLSAD QSWNWLDGSK VTFVKWANKF KSGSGQCSIL LASNETWIKV BACU010070/1-1723 WLGLSQLSAD QSWNWLDGSK VTFVKWANKF KSDSGQCSIL LASNETWIKV 1651 1700 ENSTTRP00000000026/1-1699 ECSRGYGRVV CRAPLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRNRLHW ENSBTAP00000053737/1-1723 ECSRGYGRVV CKVPLGPDYR GIGIAFAVLS ILAVTCGLIW LFFRRNRWHW bmy_05591T0/1-1030 ECSRGYGRVV CTVPLGPDYR GMGITFAVLS FLGLISGLIW LLFQRNRLHW BACU010070/1-1723 ECSRGYGRVV CTVPLGPDYR GMGITFAVLS FLGLISGLIW LLFQRNRLHW 1701 1750 ENSTTRP00000000026/1-1699 VGFSSVRYQQ GVNEDEIML- SLHD ENSBTAP00000053737/1-1723 LGFSSVRYQQ GGNEDEIMLP SFHD bmy_05591T0/1-1030 VGFSSVRYQQ GANEDEIMLP SFHD BACU010070/1-1723 VGFSSVRYQQ GANEDEIMLP SFHD