KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:21:53 2014 Check: 00 .. Name: ENSP00000336740/1-647 Len: 1196 Check: 5136 Weight: 1.00 Name: ENSBTAP00000053752/1-647 Len: 1196 Check: 3605 Weight: 1.00 Name: BACU012012/1-1196 Len: 1196 Check: 6018 Weight: 1.00 Name: bmy_00380T0/1-623 Len: 1196 Check: 4385 Weight: 1.00 Name: ENSTTRP00000008226/1-561 Len: 1196 Check: 9090 Weight: 1.00 // 1 50 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 MEEADKTGRG GGLEESQEIQ KGFTEEVTFE LDLEKRVPET ALVLESKIGI bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 DVPVATKPVG SDTDGAGLLG AFGPGAGGLV GAGLGAGLGA FPAGAYPGAL bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 VPGGPAGAAA AYKAAAKAGA AGLGGVGGIG GVGGLGVPAG AVVPQLGAGV bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 GGKPGKVPGA RFPGVGVLPG VPTGAGVKAK APGVGPFGGQ QPGVPLGYPI bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 KAPKLPSGYG LPYSTGKLPY AAAQAAAAQA AAAKAAKIGA GIQAAAAAKA bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 AAKAAQFGLG PGVGLGPGVG LGPGVGVGPG VGIGPGGVIG VGAPAAAKSA bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ---------- BACU012012/1-1196 AKAAAKAQFR AAAGLPAGVP GFGPGVGVPG LGVGVGVPGF GAGAVPGALA bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000336740/1-647 ---------- ---------- ---------- ---MRLTLLC CTWREERMGE ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---MRLTLLC CTWREERMGE BACU012012/1-1196 AAKAAKYGAG VPGALGDVGG LGGVGVPGGV VGAGPDAVAA AAKAAAKAAQ bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000336740/1-647 EGSELPVCAS CGQRIYDGQY LQALNADWHA DCFRCCDCSA SLSHQYYEKD ENSBTAP00000053752/1-647 EGSELPVCAS CGQRIYDGQY LQALNADWHA DCFRCCECSA SLSHQYYEKD BACU012012/1-1196 FGSELPVCAS CGQRIYDGQY LQALNADWHS DCFRCCECSA SLSHQYYEKD bmy_00380T0/1-623 AGSELPVCAS CGQRIYDGQY LQALNADWHS DCF-----SA SLSHQYYEKD ENSTTRP00000008226/1-561 --SELPVCAS CGQRIYDGQY LQALNADWHA DCFRCCECSA SLSHQYYEKD 451 500 ENSP00000336740/1-647 GQLFCKKDYW ARYGESCHGC SEQITKGLVM VAGELKYHPE CFICLTCGTF ENSBTAP00000053752/1-647 GQLFCKKDYW ARYGESCHGC SEHITKGLVM VAGELKYHPE CFICLTCGTF BACU012012/1-1196 GQLFCKKDYW ARYGESCHGC SEHITKGLVM VAGELKYHPE CFICLTCGTF bmy_00380T0/1-623 GQLYCKKDYW ARYGESCHGC SEHITKGLVM VAGELKYHPE CFICLTCGTF ENSTTRP00000008226/1-561 GQLFCKKDYW ARYGESCHGC SEHITKGLVM VAGELKYHPE CFICLTCGTF 501 550 ENSP00000336740/1-647 IGDGDTYTLV EHSKLYCGHC YYQTVVTPVI EQILPDSPGS HLPHTVTLVS ENSBTAP00000053752/1-647 IGDGDTYTLV EHSKLYCGHC YYQTVVTPVI EQILPDSPGS HLPHTVTLVS BACU012012/1-1196 IGDGDTYTLV EHSKLYCGHC YYQTVVTPVI EQILPDSPSS HLPHTVTLVS bmy_00380T0/1-623 IGDGDTYTLV EHSKL--GHC YYQTVVTPVI EQILPDSPSS HLPHTVTLVS ENSTTRP00000008226/1-561 IGDGDTYTLV EHSKLYCGHC YYQTVVTPVI EQILPDSPSS HLPHTVTLVS 551 600 ENSP00000336740/1-647 IPASSHGKRG LSVSIDPPHG PPGCGTEHSH TVRVQGVDPG CMSPDVKNSI ENSBTAP00000053752/1-647 IPASAHGKRG LSVSIDPPHG LPGCSTEHSH TVRVQGVDPG CMSPDVKNSI BACU012012/1-1196 IPASAHGKRG LSVSIDPPHG LPGCSTEHSH TVRVQGVDPG CMSPDVKNSI bmy_00380T0/1-623 IPASAHGKRG LSVSIDPPHG PPGCSTEHSH TVRVQGVDPG CMSPDVKNSI ENSTTRP00000008226/1-561 IPASAHGKRG LSVSIDPPHG PPGCSTEHSH TVRVQGVDPG CMSPDVKNSI 601 650 ENSP00000336740/1-647 HVGDRILEIN GTPIRNVPLD EIDLLIQETS RLLQLTLEHD PHDTLGHGLG ENSBTAP00000053752/1-647 HVGDRILEIN GTPIRNVPLD EIDLLIQETS RLLQLTLEHD PHDSLGHGLG BACU012012/1-1196 HVGDRILEIN GTPIRNVPLD EIDLLIQETS RLLQLTLEHD PHDTLSHGLG bmy_00380T0/1-623 HVGDRILEIN GTPIRNVPLD EIDLLIQETS RLLQLTLEHD PHDTLSHGLG ENSTTRP00000008226/1-561 HVGDRILEIN GTPIRNVPLD EIDLLIQETS RLLQLTLEHD PHDALGHGLG 651 700 ENSP00000336740/1-647 PETSPLSSPA YTPSGEAGSS ARQKPVLRSC SIDRSPGAGS LGSPASQRKD ENSBTAP00000053752/1-647 SEPSPLGSPA HTPSGEAGSS GRQKPVLRSC SIDRSPGASS LGSPASQRKD BACU012012/1-1196 PESSPLVSPV HTPSGEAGSS GRQKPVLRSC SIDRSPGAGS LGSPASQHKD bmy_00380T0/1-623 PESSPLVSPV HTPSGEAGSS GRQKPVLRSC SIDRSPGAGS LGSPASQHKD ENSTTRP00000008226/1-561 PESSPLVSPV HTPSGEAGSS GRQKPVLRSC SIDRSPGAGS LGSPASQRKD 701 750 ENSP00000336740/1-647 LGRSESLRVV CRPHRIFRPS DLIHGEVLGK GCFGQAIKVT HRETGEVMVM ENSBTAP00000053752/1-647 LGRSESLRVV CRPHRIFRPS DLIHGEVLGK GCFGQAIKVT HRETGEVMVM BACU012012/1-1196 LGRSESLRVV CRPHRIFRPS DLIHGEVLGK GCFGQAIKVT HRETGEVMVM bmy_00380T0/1-623 LGRSESLRVV CRPHRIFRPS DLIHGEVLGK GCFGQAIKVT HRETGEVMVM ENSTTRP00000008226/1-561 LGRSESLRVV CRPHRIFRPS DLIHGEVLGK GCFGQAIKVT HRETGEVMVM 751 800 ENSP00000336740/1-647 KELIRFDEET QRTFLKEVKV MRCLEHPNVL KFIGVLYKDK RLNFITEYIK ENSBTAP00000053752/1-647 KELIRFDEET QRTFLKEVKV MRCLEHPNVL KFIGVLYKDK RLNFITEYIK BACU012012/1-1196 KELIRFDEET QRTFLKEVKV MRCLEHPNVL KFIGVLYKDK RLNFITEYIK bmy_00380T0/1-623 KELIRFDEET QRTFLKEVKV MRCLEHPNVL KFIGVLYKDK RLNFITEYIK ENSTTRP00000008226/1-561 KELIRFDEET QRTFLKEVKV MRCLEHPNVL KFIGVLYKDK RLNFITEYIK 801 850 ENSP00000336740/1-647 GGTLRGIIKS MDSQYPWSQR VSFAKDIASG MAYLHSMNII HRDLNSHNCL ENSBTAP00000053752/1-647 GGTLRGIIKS MDSQYPWSQR VSFAKDIASG MAYLHSMNII HRDLNSHNCL BACU012012/1-1196 GGTLRGLIKG MDSQYPWSQR VSFAKDIASG MAYLHSMNII HRDLNSHNCL bmy_00380T0/1-623 GGTLRGLIKG MDSQYPWSQR VSFAKDIASG MAYLHSMNII HRDLNSHNCL ENSTTRP00000008226/1-561 GGTLRALIKG MDSQYPWSQR VSFAKDIASG MAYLHSMNII HRDLNSHNCL 851 900 ENSP00000336740/1-647 VRENKNVVVA DFGLARLMVD EKTQPEGLRS LKKPDRKKRY TVVGNPYWMA ENSBTAP00000053752/1-647 VRENKNVVVA DFGLARLMVD EKTQPEDLRS LKKPDRKKRY TVVGNPYWMA BACU012012/1-1196 VRENKNVVVA DFGLARLMVD EKTQPEGLRS LEKPDRKKRY TVVGNPYWMA bmy_00380T0/1-623 VRENKNVVVA DFGLARLMVD EKTQPEGLRS LKKPDRKKRY TVVGNPYWMA ENSTTRP00000008226/1-561 VRENKNVVVA DFGLARLMVD EKTQPEDLRS LKKPDRKKRY TVVGNPYWMA 901 950 ENSP00000336740/1-647 PEMINGRSYD EKVDVFSFGI VLCEIIGRVN ADPDYLPRTM DFGLNVRGFL ENSBTAP00000053752/1-647 PEMINGRSYD EKVDVFSFGI VLCEIIGRVN ADPDYLPRTM DFGLNVRGFL BACU012012/1-1196 PEMIHGRSYD EKVDVFSFGI VLCEIIGRVK ADPDYLPRTM DFGLNVRGFL bmy_00380T0/1-623 PEMIHGRSYD EKVDVFSFGI VLCEIIGRVK ADPDYLPRTM DFGLNVRGFL ENSTTRP00000008226/1-561 PEMIHGRSYD EKVDVFSFGI VLCEIIGRVN ADPDYLPRTM DFGLNVRGFL 951 1000 ENSP00000336740/1-647 DRYCPPNCPP SFFPITVRCC DLDPEKRPSF VKLEHWLETL RMH------- ENSBTAP00000053752/1-647 DRYCPPNCPP SFFPITVRCC DLDPEKRPSF VKLEQWLETL HMH------- BACU012012/1-1196 DRYCPPNCPP SFFPITVRCC DLDPEKRPSF VKLEQWLETL HMHFGWPPAT bmy_00380T0/1-623 DRYCPPNCPP SFFPITVRCC DLDPEKRPSF VKLEQWLETL HMH------- ENSTTRP00000008226/1-561 DRY-PPNCPP SFFP------ ---------- ---------- ---------- 1001 1050 ENSP00000336740/1-647 ---------- LAGHLPL--- -------GPQ LEQ------- ---------- ENSBTAP00000053752/1-647 ---------- LAGHLPL--- -------GPQ LEQ------- ---------- BACU012012/1-1196 GLTAGAARQG LLGDLPARRE WTACPPRGPR LRPARPAAPV PDSGESTLQQ bmy_00380T0/1-623 ---------- LAGHLPL--- -------GPQ LEQ------- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000336740/1-647 ---------- ---------- ---------- LDRGFWE--- ---------- ENSBTAP00000053752/1-647 ---------- ---------- ---------- LDRGFWE--- ---------- BACU012012/1-1196 IPLYAVAGCG TLSGAADAQT PPQRQALTCL LPCGPWPLPF LCPRPQSWSG bmy_00380T0/1-623 ---------- ---------- ---------- LDRGFWE--- ---------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000336740/1-647 ---------- ---------- -----TYRRG ESGLPAHPEV PD-------- ENSBTAP00000053752/1-647 ---------- ---------- -----TYRRG ESGLPAHPEV PD-------- BACU012012/1-1196 CTDTVTSPCL TSVLVGPPPH ASPCMSWRTR VSCPPSHTRY PIPHPLPRLS bmy_00380T0/1-623 ---------- ---------- -----TYRRG ESGLPAHPEV PD-------- ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000336740/1-647 ---------- ---------- ---------- ---------- ------ ENSBTAP00000053752/1-647 ---------- ---------- ---------- ---------- ------ BACU012012/1-1196 CAHSARLQLL RGWARGQTAS DRGSSHVFPG AKQGVWGPSP PQGVSR bmy_00380T0/1-623 ---------- ---------- ---------- ---------- ------ ENSTTRP00000008226/1-561 ---------- ---------- ---------- ---------- ------