KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:03 2014 Check: 00 .. Name: ENSBTAP00000053768/1-1801 Len: 1939 Check: 6771 Weight: 1.00 Name: ENSTTRP00000015646/1-1798 Len: 1939 Check: 3194 Weight: 1.00 Name: bmy_17852T0/1-1577 Len: 1939 Check: 9770 Weight: 1.00 Name: BACU008820/1-1824 Len: 1939 Check: 7742 Weight: 1.00 // 1 50 ENSBTAP00000053768/1-1801 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015646/1-1798 ---------- ---------- ---------- ---------- ---------- bmy_17852T0/1-1577 ---------- ---------- ------MSPQ TCSKLSLLGK PPLPRRLLPW BACU008820/1-1824 MAQQALAHAL ALPVLEGWSH GGPMVTWTCR PARNSACWDE PPLPRQLLPW 51 100 ENSBTAP00000053768/1-1801 ---------- ---------- ---------- ---MATRVEV GSISSLTGVP ENSTTRP00000015646/1-1798 ---------- ---------- ---------- ---MVTRVEV GSISSLTGVP bmy_17852T0/1-1577 ECADSPIGDE TRYHWLSPAV TRPQPGPASS AVTMVTRVEV GSINSLTGVP BACU008820/1-1824 ECADSPIGDE TRYRWLSLAV TRPQPGPASS AVTMVTRVEV GSVNSLTGVP 101 150 ENSBTAP00000053768/1-1801 GLGELSKEEA LTRTYFRQAG DAPGPPSTLL LEGKSPLRSP VRLLPLPRLA ENSTTRP00000015646/1-1798 GLGELSKEET LTRTYFRQAG SASGAPSALL LEGKSPLRSP VRLLPLPRLT bmy_17852T0/1-1577 GLGELSKEEA LTRTYFRQAG KAPGAPSARL SEGRSPLRSP VRLLPLPRLA BACU008820/1-1824 GLGELSKEEA LTRTYFRQSG KAPGAPSARL LEGKSPFRSP VRLLPLPRLA 151 200 ENSBTAP00000053768/1-1801 PKPFSKEKAA DVTPLWPSLA RPSPAGGLSQ DVASGRLNEK MPGLAGQEAG ENSTTRP00000015646/1-1798 PKPFSKEKAG E--SPWPSLS RPSPTGGLPR GVAAEGLDEK MPGLVGQEAG bmy_17852T0/1-1577 PKPFSKETAG DVTSSWPSLS RPSPTGGLSR DVAAEGLGEK MPGLVGREAG BACU008820/1-1824 PKPFSKEKAG DVTSSWPSLS RPSPTGGLSR DVAAEGLGEK MPGLVGREAG 201 250 ENSBTAP00000053768/1-1801 SGDRPRNVSL FPKAAISQPM PNPVI-FESN KAGPALGK-- --GACEANAG ENSTTRP00000015646/1-1798 SGDGPSSSSL FSKAAVLRPN PSTMILFETT KAGPTLGKGV GRGAPEADAG bmy_17852T0/1-1577 SGDGPSSSSL VSKAALLRPS SSTMILFETT KAGPTLGKGV GRGAPEADAG BACU008820/1-1824 SGDGPSSSSL VSKAALLRPS PSTVILFETT KAGPTLGKGV GRGAPEADAG 251 300 ENSBTAP00000053768/1-1801 MSQGPASAPR PEVAAKPAPP ARKPVGSLPR PASLPQDSRT VATPEDTGPK ENSTTRP00000015646/1-1798 VSQGPPSASR PEVATKPALP ARKPAGTLPR PASVSQVTRP AATQEETGLK bmy_17852T0/1-1577 VSQGPPAASR PEVATKPALP ARKPAGTLPQ PASLSQDTRP AATQEETGLK BACU008820/1-1824 VSQGPPAASR PEVATKPALP ARKPAGTLPR PASLSQDTGP AATQEETGLK 301 350 ENSBTAP00000053768/1-1801 EPLSKASSVE DAGGTAPEPP RPRPKRRPVS AIFTESIQTP KP-GPSGVAA ENSTTRP00000015646/1-1798 EPLSKASSVE DAGSPALE-P RPRLKRRPVS AIFIESIQPQ KPAGPGEAAV bmy_17852T0/1-1577 EPLSKASSVE DAGSPALE-P RPRLKRRPMS AIFIESIQPQ KPAGPGGAAM BACU008820/1-1824 EPLSKASSVE DAGSPALE-P RPRLKRRPVS AIFIESIQPQ KPAGPGGAAV 351 400 ENSBTAP00000053768/1-1801 VGKLPPTPPE KTWVRRPRPL SVDLTARFES REALARKVAD EATAGPTAQQ ENSTTRP00000015646/1-1798 VGKAPPTPPE KTWVRRPRPL SVDLTARFES REALARKV-- EATAGSTAQA bmy_17852T0/1-1577 AGKAPPTPPE KTWVRRPRPL SVDLTARFES REALARKVAD EAIAGSTAQW BACU008820/1-1824 AGKAPPTPPE KTWVRRPRPL SVDLTARFES REALARKVAD EAIAGSTAQW 401 450 ENSBTAP00000053768/1-1801 RGPERPDPEL RVDRECLVKA EAPPHDPDSD FLQVAQKIQE RKERLLLKQG ENSTTRP00000015646/1-1798 -GPERPDLDP KVDGERLVKA EAPLRDPDSD FLQVARKIQE RKERLLCKQA bmy_17852T0/1-1577 RGPERPDLGP KVDGECLVKA EAPLHDPDSD FLQVARKIQE RKENLLCKQA BACU008820/1-1824 RGPERPDLDP KVDGECLVKA EAPLHDPDSD FLQVARKIQE RKEKLLCKQA 451 500 ENSBTAP00000053768/1-1801 EMGSLRTAGG PARVTPTSAQ GLGEEKAKLD REPEKAAKDP QSPLPRPGKG ENSTTRP00000015646/1-1798 EKGHLRTMGG SARVTPISDQ NLGEEKAKLD GEPEKAPRAP PSPSPRPGKG bmy_17852T0/1-1577 EMGNLRTMGG SARVTPTNDQ NLGEEKAKLD GEPEKAPRAP QSPSPRPGKG BACU008820/1-1824 EMGNLRTMGG SARVTPTNDQ NLGEEKAKLD GEPEKAPRAP QSPSPRPGKG 501 550 ENSBTAP00000053768/1-1801 QDMAEVRRRE AAGETRVGGE QTPRGGVKNR IGLFGEEGAS ALAAGFESPP ENSTTRP00000015646/1-1798 QEIAEVKSRA ADGETQAGGE RTPRGSVKKH VSLFGEESAS ALSLGSSPPS bmy_17852T0/1-1577 QEVAEVKSRA ADGETQAGGE RTPRGSVKKH VSLFGEESAS ALSLGSSPPS BACU008820/1-1824 QEVAEVKSRA ADGETQAGGE RTPRGGVKKH VSLFGEESAS ALSLGSSPPS 551 600 ENSBTAP00000053768/1-1801 ATPESPAIPP EPEKAGVSVQ ERIKGWATES SEAKPELRRR VVQTRPLSAD ENSTTRP00000015646/1-1798 APAESPPAAP ELGKAGVSVQ ERIKGWATES SEAKPEIRKK AIQARPLSAD bmy_17852T0/1-1577 APPESPPAAP EQGKAGVSVQ ERIKGWATES SEAKPEIRKK VVQARPLSAD BACU008820/1-1824 APPESPPAAP EQGKAGVSVQ ERIKGWATES SEAKPEIRKK VVQARPLSAD 601 650 ENSBTAP00000053768/1-1801 LTKLFSSAAS SNEVRYEKCL ELSGELPREP REKPKDRHGV EGTSVTRSPW ENSTTRP00000015646/1-1798 LTKLFSSAAS SNEVTCEKCS EPSSELPKEP REKQKEGHGV DGASVPRSPW bmy_17852T0/1-1577 LTKLFSSAAS SNEVTCEKCS ELSSEPPKEP REK------- ---------- BACU008820/1-1824 LTKLFSSAAS SNEVTCEKCS ELSSEPPKEP REKQKEGHGV DGASVPRSPW 651 700 ENSBTAP00000053768/1-1801 KPGLPREKPR QTERKDSFDR VPGGARGESA VGARSPSEGT PDDDGSFQTV ENSTTRP00000015646/1-1798 KPATPREKSR QTEWKDSSDQ VPGSGWSESV VGPLSPSAST PDDDRSFQTV bmy_17852T0/1-1577 -PATTREKSR QTERKDSSDQ VPGSGWSESV VGPLSPSAST PYDDGSFQTV BACU008820/1-1824 KPATTREKSR QIEQKDSSDQ VPGSGWSESV VGPLSPSAST PDDDGSFQTV 701 750 ENSBTAP00000053768/1-1801 WATVFENHVE KHTITAPSGS SPWATTPADL ANVSEPRSRL LGPRSSFPQT ENSTTRP00000015646/1-1798 WATVFEHHVE KHTVADLSGH CPAAMTPRDT ADVLELRSRF LGSRSSFPQT bmy_17852T0/1-1577 WATVFEHHVE KHTVADPSGH CPAAMTPRDT ADVLELRSMF LGSRSSFPQT BACU008820/1-1824 WATVFEHHVE KHTVADPSGH CPTAMTPRDT ADVLELRSMF LVSRSSFPQT 751 800 ENSBTAP00000053768/1-1801 TALKREWLED PDLERGGGTA FSSGEPRQHR VSSLLGRHPG GEKGSHHPFL ENSTTRP00000015646/1-1798 TYLKKEWLEN PDPKKSGRTA FSNGEPKQHH TSSVLGRYPV GDKCSNNPCL bmy_17852T0/1-1577 TYLKKEWLEN PDPKKSGRTA FSNGEPKQHH TSSLLGRYPV GEKCSNNPCL BACU008820/1-1824 TYLKKEWLEN PDPKKSGRTA FSNGEPKQHH TSSLLGRYPV GEKCSNNPCL 801 850 ENSBTAP00000053768/1-1801 KLPESAPAPE RVEPRYDVVH AVGERAHSEA VLTAPEEKAL TLRSSRSRPP ENSTTRP00000015646/1-1798 KLLESPPASE RVEPRYDIVH AVGERAHSEA IPTAPEEKAV TLRSSQSRLS bmy_17852T0/1-1577 KLLESPPASE RVEPRYDIMH AVGERAHSEA IPTAPEEKAV TLRSSQSRPL BACU008820/1-1824 KLLESPPASE RVEPRYDIMH AVGERAHSEA IPTAPEEKAV TLRGSQSRLS 851 900 ENSBTAP00000053768/1-1801 PSQEVTHAMT PADPKCRPEG QVGSVQRAGL IWEARGTREV SGPKPEFHRE ENSTTRP00000015646/1-1798 LSQEVAPAVT PADPERRLEG QVGSVQRASL IWEARGTREV SGPKS----- bmy_17852T0/1-1577 LSQEVTPAVT PADPERRLEG QVGSVQRASL IWEARGTHEV SGPKPEFHRE BACU008820/1-1824 LSQEVTPTVT PAHPERRLEG QVGSVQRASL IWEARGTREV SGPKPEFHRA 901 950 ENSBTAP00000053768/1-1801 PKDTHGGSCP SPRWTGGVAV SWHKAAVGLS EGRGTEPSPE AASART---- ENSTTRP00000015646/1-1798 -----GGNCL SPRWTGGVTI NWQKAAVGVS EERGSEPSPE ATSARTIQAA bmy_17852T0/1-1577 LKDTSGGNCL SPRWTGGVAM SWQKAAVGVS EERGLEPSPE VTSARTIQAA BACU008820/1-1824 LKDTSGGNCL SPRWTGGVAM TWQKTAMGVS EERGLEPSPE ATSARTIQAA 951 1000 ENSBTAP00000053768/1-1801 TLEAQHPGTE GAGIQPGERA PPRGAPPEPL PRARDEADDS RVQLQADVLG ENSTTRP00000015646/1-1798 IQEAQHQGID GAGIKPGERG APQGGPLEPP SRAKGEASDF RARPQADAM- bmy_17852T0/1-1577 IQETQHQGIE GAGIKPGERG PPQGDPLEPP SRAKGEASDF RARPQADVLL BACU008820/1-1824 IQETQHQGIE GAGIKPGERG PPQGGPLEPP SRAKGEASDF RSRPQADVLL 1001 1050 ENSBTAP00000053768/1-1801 QTGPLAMAGS Q--------- EPEARRRRVS PGDQRLDRWR RRTLPHDVKF ENSTTRP00000015646/1-1798 QKGPLAVAGG QGGARPARVP EPEARMRKVS PSDQRMERWR RRTLPHDAKF bmy_17852T0/1-1577 QKGPLAVAGG QGGGRPARVP DPEARTRKVS PSDQRMERWR RRTLPHDAKF BACU008820/1-1824 QKGPLAVAGG QGGARPARVP EPEARMRKVS PSDQRMERWR RRTLPHDAKF 1051 1100 ENSBTAP00000053768/1-1801 DEFSLLPPEH SSRAEPRGDH LSPTAPGALG KPQLLPGREG TGQGSPGTSL ENSTTRP00000015646/1-1798 DEFSLLAPEH SSKAEQRRTG HLTHTAGALG KLQLAHGWEE PQQGNPGVSQ bmy_17852T0/1-1577 DEFSLLAPEH SSKAEQRRTG YLTCTAGALG KPQLAHGWEE PQQGNPGASQ BACU008820/1-1824 DEFSLLAPEH SSKAEQRRTG YLTRTTGALG KPQLAHGWEE PQQGNPGVSQ 1101 1150 ENSBTAP00000053768/1-1801 DWVLPAAKQG SPVEPKATFF AVTYQIPDTQ KAKNVVRPGP ENWTEPSRKA ENSTTRP00000015646/1-1798 --VLSAAKQG SSVEPKATFF AVTYQIPDTQ KAKSIVKPRS ENLMEHSRKI bmy_17852T0/1-1577 --VLSAAKQG SSVEPKATFF AVTYQIPDPQ KAKSVVKPGL ENLMEHSRKI BACU008820/1-1824 --VLSAAKQG SSVEPKATFF AVTYQIPDTQ KAKSVVKPGP ENLMEHSRKI 1151 1200 ENSBTAP00000053768/1-1801 APPLSPLSYT PTSVPLNREE LLETVGGKNR ALGREREHTS FPKPTEHPAS ENSTTRP00000015646/1-1798 APPPSPHLLT STLVSLNHEE LLETMGSKNQ APGREHDRAS FPK-TPRPAS bmy_17852T0/1-1577 APPPSPHLLT STLVSLNREE LLETMGSKNQ APGREHDSAN FPK-TPRPAS BACU008820/1-1824 APPPSPHLLT STLVSLNREE LLETMGSKNQ APGREHDSAN FPK-TPRPAS 1201 1250 ENSBTAP00000053768/1-1801 LGDRILGSPG ERISDADAVW VRRGPEGGGG FQNGWKDSGN KTSPGGAPQT ENSTTRP00000015646/1-1798 LGERILGPPS ERISDDDALW VRRGPEDSVG FHSDWKDRGN KTSPRGAPKT bmy_17852T0/1-1577 LGDRILGPPS ERISDADALW VHRGPEDSIG FHSDWKDGGN KTSPPGAPKT BACU008820/1-1824 LGDRILGPPS VRISDADALW VRRGPEDSIG FHSDWKDGGN KTSPPGAPQT 1251 1300 ENSBTAP00000053768/1-1801 PPAFRSPPKA SELLVRRKTE AVSETFPGKA KAGYRSSVLD IDALMAEYQR ENSTTRP00000015646/1-1798 PPALKSHPKA THLLLRRKTE VVSETFPGKI KDGYRSSVLD IDALMAEYQR bmy_17852T0/1-1577 PPALKSHPKA THLLVRRKTE VVSETFPGKI KDGYRSSVLD IDALMAEYQR BACU008820/1-1824 PPALKSHLKA THLLVRRKTE VVSETFPGKI KDGYRSSILD IDALMAEYQR 1301 1350 ENSBTAP00000053768/1-1801 PPAGSPREAQ EWMAGSPAEL RGSDPERPGP QDEADQRRRS LKERPEAEAP ENSTTRP00000015646/1-1798 QPAAGPREAQ ELVGGPPTEP RGSNPERPGQ QGEVDRRRRS LKEGPEIEGP bmy_17852T0/1-1577 QPAAGPREAQ ELMGGLPAEP RASNPERPGQ QGEVDRRRRS LKEGPEIEGP BACU008820/1-1824 QPAAGPREAQ ELMGGPPAEP RASNPERPGQ QGEVDRRRRS LKEGPEIEGP 1351 1400 ENSBTAP00000053768/1-1801 QRQASFAETS PGSTPGSGKY LAETPGAATH -KVSSPLWGA PHSAPPEKNP ENSTTRP00000015646/1-1798 RKQASFAETN PSPTPGSGKQ LAETLEAATN TKVSPPLWAL PHSAPPEKYP bmy_17852T0/1-1577 RKQASFAETN PSSTPGSGKQ LAETPGAATN TKVSPPLWAL PHSAPPEKYP BACU008820/1-1824 RKQASFAEAN PSSTPSSGKQ LAETPGAATN TKVSPPLWAL PHSAPPEKYP 1401 1450 ENSBTAP00000053768/1-1801 GASSGPAAGP RKKGSGIPED EKKTFVSKHH SAKCQHPSAE SKPATAWVDP ENSTTRP00000015646/1-1798 GASSGP-AGP RKKGSGVTED EKKAFISKHH SAKCPHSPAE SKPTTSWEDL bmy_17852T0/1-1577 GASSGP-AGP RKKGVGVTED EKKAFISKHH SAKCQHPLAE SKPTTSWEDL BACU008820/1-1824 GASSGP-AGP RKKGSGVTED EKLALISKHH SAKCQHPLAE SKPTTSWEDL 1451 1500 ENSBTAP00000053768/1-1801 GGGASVQPKS SPADQRKGTP RKPPGRGEES GVVPWADHLR DLGRSPLDVK ENSTTRP00000015646/1-1798 GSGATVPPRS SPTDQKKGLP RKSLGRGEEG SVTQWGNHPW DCGRSLLDVK bmy_17852T0/1-1577 GSGATMPPRS SPTDQKKGPP RKSLRRGEED SVTQRGNHPL DCGRSLLDVK BACU008820/1-1824 GSGATMPPRL SPTDQKKGPP RKSLGRGEED NVTQWGNHPW DCGRSLLDVK 1501 1550 ENSBTAP00000053768/1-1801 RAYSEKGPPL KIREGLSIMQ EARERRQEQP KGRPSLPRES AEARDTKTGL ENSTTRP00000015646/1-1798 RAHSEKDPPL KIREGLFIMQ EARERRQEQP KGRPSLPRES SEAKDIKTGL bmy_17852T0/1-1577 RAHSEKGPPL KIREGLSIMQ EARERRQEQP KGRPSLPRES SEAKDIKTGL BACU008820/1-1824 RAHSEKGPPL KIREGLSIMQ EARERRQEQP KGRPSLPRES SEAKDIKTGL 1551 1600 ENSBTAP00000053768/1-1801 CRQESGNRDS QK-------- ---------- --VSPRDLGR ERALPDNEPP ENSTTRP00000015646/1-1798 CQQESGNRDS QK-------- ---------- --VPP---GR EFALQDNEPL bmy_17852T0/1-1577 CRQESGNRDN AATVTVFDLL GDLPTLQSGL PIVPP---GR EDTLQDNEPL BACU008820/1-1824 CRQESENRDS QK-------- ---------- --VPP---GR EDALQDNEPL 1601 1650 ENSBTAP00000053768/1-1801 LRQVSPATVG PRRSHSFCKD RRSGPFVDQL KQCFSRRTPE AKDTDTLVQE ENSTTRP00000015646/1-1798 LWQVIPVAAG PRRSHSFCKD KRSGPLVDQL KQCFSRRTPE AKDTDTLVQE bmy_17852T0/1-1577 LRQVIPVAAG PRRSHSFCKD KRSGPFV--- ---------- ---------- BACU008820/1-1824 LRQVTPVAAG PRRSHSFCKD KRSGPFVPVS LLVHPR---- ---------Q 1651 1700 ENSBTAP00000053768/1-1801 TDSQYGTWPD QRQS-----G ESLAPESPSP DSSAASAWKQ PPSSRLSSLS ENSTTRP00000015646/1-1798 ADSQYGTWLH QHQS-----G ESLAPESPSP DSSATSAQKQ PPSSRLSSLS bmy_17852T0/1-1577 ---------- ---------- ---------- ---------- ---------- BACU008820/1-1824 AYARLSSWPS AASTFLVVDG YPLGQSEPAR ATSRCSV--S PPASRTPLSN 1701 1750 ENSBTAP00000053768/1-1801 SQTEVTSAGD QHDCSREQRS TSVDRSSTDL ESTDGMEGPP PPDACPAKKV ENSTTRP00000015646/1-1798 SQTETTSAGD QHDCSKDQQS TSVDRSSTDL ESTDGMEGPP PADACPAKRV bmy_17852T0/1-1577 ---------- ---------- ---------- ---------- ---IC----- BACU008820/1-1824 WTISQSAREQ GPGCT----- ---------- -STCAISWGQ PPTGCPLGNV 1751 1800 ENSBTAP00000053768/1-1801 -----DDFPF IDQTSVLDSS ALKTRVQLSK RSRRRAPTAH SLRRSRTSEP ENSTTRP00000015646/1-1798 -----DDFSF IHQTSVLDSS ALKTRVQLSK RSRRRAPISH SLRRSRVSES bmy_17852T0/1-1577 ---------- ---------- ---------- ---------- ---------- BACU008820/1-1824 GCRVGGAMGL LLKSSEVH-A VVSSAAELSS PLVSPGASCQ LLCPESGCGP 1801 1850 ENSBTAP00000053768/1-1801 D---GRSAWE EEADSAWMFR DSTAEEKSPR KEESDEEERT PRAERTPVSR ENSTTRP00000015646/1-1798 E---SRSPLE EEANSTWMFK DST-EEKSPR KEESDEEEKT PRAERTPISR bmy_17852T0/1-1577 ---------- ---------- ---------- ---------- ---------- BACU008820/1-1824 DVYGARGPWG ---------- ---------R GYLCATPCLG SRAGRSLCAS 1851 1900 ENSBTAP00000053768/1-1801 PQRMPVFPGV DPAALKAQLY KRP--DSPNE TPGWAPQPKT PKSPFQPGVL ENSTTRP00000015646/1-1798 PQRMPVFPGM DPAALKAQLH KRPEMDSPSD TPSWAPQPKT PKSPFQPGVL bmy_17852T0/1-1577 ---------- ---------- ---------- ---------- ---------- BACU008820/1-1824 PVPVQTWADL TEVVW----- ---------- --SWGSGAAP LLTSAAPFAL 1901 1950 ENSBTAP00000053768/1-1801 GSRVLPSSME KDERSEEPSP QWLKELKSKK RQSLYENQA ENSTTRP00000015646/1-1798 GSRVLPPSVE KDERSEEPSP QWLKELKSKK RQSLYENQA bmy_17852T0/1-1577 ---------- ---------- ---------- --------- BACU008820/1-1824 EPQLPRVARG DDNVSPREAP ---------- ---------