KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 18:22:04 2014 Check: 00 ..
Name: ENSBTAP00000053771/1-977 Len: 1000 Check: 1374 Weight: 1.00
Name: ENSTTRP00000011071/1-975 Len: 1000 Check: 5132 Weight: 1.00
Name: bmy_17060T0/1-970 Len: 1000 Check: 2339 Weight: 1.00
Name: BACU015006/1-78 Len: 1000 Check: 6384 Weight: 1.00
//
1 50
ENSBTAP00000053771/1-977 SKLFRLFNEI SFCVTVKSVY CFGLSVLSEP LPLTPESLNV SINSTKQCMH
ENSTTRP00000011071/1-975 MALFA-F-QT XXXXXXXXXX XXXXXXLSEP LPLTPGSLKV SVNSTCQCLH
bmy_17060T0/1-970 MALFAVF-QT TFLLALLSLR TYESEVLSEP LPLTPESLKV SVNSTRQCLH
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
51 100
ENSBTAP00000053771/1-977 LQWTVHNPDY HQEFKMVFQI QISRFKASNV IWLENYSTTV KQNQVLHWSW
ENSTTRP00000011071/1-975 LQWTVHSLAY HQELKMVFQI QISRFKTSNV IWVENYSTTV KRDQVLHWSW
bmy_17060T0/1-970 LQWTVHSLAY HQELKMVFQI QISRFKTSNV IWVENYRTTV KRNRVLHWSW
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
101 150
ENSBTAP00000053771/1-977 ESELPLECAI HFVRMRTMVD DARIPAPRLW SNWSSWEKAD AQNSLGDHPL
ENSTTRP00000011071/1-975 ESELPLECAA HFIRMRSMVD DARIPKPGFW SNWSSWEEAD AQNLLGHDPL
bmy_17060T0/1-970 ESELPLECAA HFIRMRSMVD DAGIPKPGFW SNWSSWEEAD AQNSLGHDPL
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
151 200
ENSBTAP00000053771/1-977 YVFPKDKLVE EGSNVTVCYI SRNHQDNISC YLEDVLIYGR QLDQNVWAFE
ENSTTRP00000011071/1-975 FVFPKDKLVE EGSNVTICYV SRIHQDNISC YLEGVQIYGE QLDRSVSAFE
bmy_17060T0/1-970 FVFPKDKLVE EGSNVTICYV SRIHQDNISC YLEGVQIYGE QLDRSVSAFE
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
201 250
ENSBTAP00000053771/1-977 FKNVSFIRKT GTNFYCKGQ- -GDPEGVVLL VS-------- ----KVLEEP
ENSTTRP00000011071/1-975 LKNVSFIREK GTNVFCKVDQ GGVLGGIVLF VS-------- ----KVLEEP
bmy_17060T0/1-970 LKNVSFIRKR GTNVFCKVDQ GGALGGIVLF VSTKSFICFF LVRTEVLEEP
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
251 300
ENSBTAP00000053771/1-977 KNFSCETQDL KTLTCTWDPG NDTGLIQLP- -SYTLFESFS GKKTLCKHRN
ENSTTRP00000011071/1-975 KDFSCETQDL KTLTCTWDPG SDTGLSKQPS QSYTLFESFS GKKTLCKHRN
bmy_17060T0/1-970 KDFSCETQDL KTLTCTWDPG SDTGLSKQPS QSYTLFESFS GKKTLCKRRN
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
301 350
ENSBTAP00000053771/1-977 RCDWQVTQDS QEMYNFTLVA ENYFRKRSVS ILFNLIHGVH PMAPYSLFPK
ENSTTRP00000011071/1-975 WCDWQVAQDS QETYNFTLLA ENYFRKRSVS ILFNLTQRVH PMTPYNLLPK
bmy_17060T0/1-970 WCNWQVAQDS QETYNFTLVA ENYLRKRSVS ILFNLTQRVH PMTPYNLFPK
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
351 400
ENSBTAP00000053771/1-977 SVSATNATVT WKVYSIGSSS ALLCQLQLLG EGKVIQQHNI SVRVNGEYLL
ENSTTRP00000011071/1-975 NVGATNATMT WKVHSIGNNS TLLCQLELLA EGKVIQS-NV SIKVNGEYLL
bmy_17060T0/1-970 NVGATNATMT WKVHSIGNNS TLLCQLELLA EGKVIQQHNV SIKVNGEYLL
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
401 450
ENSBTAP00000053771/1-977 SELKPDTEYM ARVRCAYADH FWKWSELISQ NFTTAEAAPS EAPDVWRDVT
ENSTTRP00000011071/1-975 RELEPDTEYV ARVRCAYTNH FWKWSELISQ KFNTAEAAPS EAPDVWRNLK
bmy_17060T0/1-970 SELEPDTEYV ARVRCAYTNH FWKWSELISQ KFNTAEAAPS EAPDVWRNMK
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
451 500
ENSBTAP00000053771/1-977 FVSGHPTVTL FWKPLSKVHA NGKILFYNVV VENLDEPSSL KVLSVPAPAN
ENSTTRP00000011071/1-975 MVSGHPTVSL FWKPLSKVHA NGKILFYNVI VENLDKPSRF EVLSIPAPAS
bmy_17060T0/1-970 MVSGHPTVSL FWKPLSKVHA NGKILFYKVI VENLDKPSRL EVLSIPAPAS
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
501 550
ENSBTAP00000053771/1-977 STKVTLNQSS YQICVTAHNS VGPSPASTVA ISGHPGNENV EEGRMNGTED
ENSTTRP00000011071/1-975 STELTLDQCS YQIHVTAHNS VGPSPASVIV VSGDPGNXXX XXXXXXXXXX
bmy_17060T0/1-970 STELTLDQCS YQIHVTAHNS VGPSPASVTV VSGDPGNEEV ESGRVNGTED
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
551 600
ENSBTAP00000053771/1-977 GFPMSWKPQS RNATGYVVEW CDSPQHLPCV LRWKNLGPTN TDTVISSGAF
ENSTTRP00000011071/1-975 XXXXXXXXXX XDATGYVVEW CDGPQDLPCV LQWKNLGPNT TSTVISSGAF
bmy_17060T0/1-970 GFSVSWKPQS GDATGYVVEW CDGPQDLPCV LQWKNLGPNT TSTVISSGAF
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
601 650
ENSBTAP00000053771/1-977 RPGVRYNFRI YEISTKRMAH LLEKKAGYLK ELAPSYNPKV NMSNLTSHSF
ENSTTRP00000011071/1-975 RPGVRYNFRI YGISTKRMAH LLEKKAGYLE ELAPSDNPQV VMSKLTSHSF
bmy_17060T0/1-970 RPGVRYNFRI YEISAKRMAH LLEKKAGYLE ELAPSDNPQV VMSNLTSHSF
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
651 700
ENSBTAP00000053771/1-977 TLSWKDYPTE SQTGFIQGYY VYLKSKTGEK CHRGFEKTFL TEKNTDNSVC
ENSTTRP00000011071/1-975 TLSWKDYSTE SQPGFIQGYH VYLKPKAGEQ CHPAFEKTVL PE----DSVC
bmy_17060T0/1-970 TLSWKDYSTE SQPGFIQGYH VYLKPKAGEQ CPPAFEKTVL PE----DSVC
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
701 750
ENSBTAP00000053771/1-977 CKYTIDNPDQ KTFVVKDLQP ESAYEFLVTP YTSAGEGPLD DFRKVTTPDE
ENSTTRP00000011071/1-975 CKYTIDNPGQ KTFVVENLQP ESVYEFFVTP YTSVGEGPLD AFTKVTTPDE
bmy_17060T0/1-970 CKHTIDNPEQ KTFVVENLQP ESVYEFFVTP YTSVGEGPLD AFTKITTPDE
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
751 800
ENSBTAP00000053771/1-977 Y------SHI LIHIILPMVF FVFVIMIICY LKSQWLKDKC YPDIPDPYKS
ENSTTRP00000011071/1-975 Y------SHT LIHIILPMIF CVLIVMIICY LKSQWLKEKC YPDSPNPYKS
bmy_17060T0/1-970 YYLMEKGPHT DTH------- ---------H PAHDFLRFDC HDN-------
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
801 850
ENSBTAP00000053771/1-977 SVLSLIKFKE NPHITIMNVN DCVPDAIEVV NKPEGSKMQF VGTRKSPTET
ENSTTRP00000011071/1-975 SVLSLIKSKE NPHLTIMYVN DCVPDAIEVI NKPEGSKIQF LGTRKSLTET
bmy_17060T0/1-970 --LLLKKSVE NPHLTIMNVN DCVPDAIEVI NKPEGSKIQF LGTRKSLTET
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
851 900
ENSBTAP00000053771/1-977 KGTKPAYLDL LPTEKNYSGP GPCICFENFT YNQAASDLGY CGHFPVTPQA
ENSTTRP00000011071/1-975 EFTKPAYLYL LPTEKNYSGP GPCMCFENFT YNQAASDFAS CGHFPVTPQA
bmy_17060T0/1-970 EFTKPAYIYL LPTEKNYSGP GPCICFENFT YNQAASDFAS CGHFPVTPQA
BACU015006/1-78 ---------- ---------- ---------- ---------- ----------
901 950
ENSBTAP00000053771/1-977 PHCQLGPLTS PENLLKTLEQ SYMNSLGEIP AGEANLNYVS QLASPMSGDR
ENSTTRP00000011071/1-975 PPHQLGPLTS PENLLKALEQ NYMNSLGEIP AGEANLNYVS QLASPTSGDK
bmy_17060T0/1-970 PLHQLGPLTS PENLLKALEQ NYMNSLGEIP AGEANLNYVS QLASPTSGDK
BACU015006/1-78 ---------- ---------- --MNSLGEIP AGEANLNYVS QLASPTSGDK
951 1000
ENSBTAP00000053771/1-977 ESPPTNPPEP ALCSEYKMQM AIPLGLASPA RSENSSLSST ALLDPREHC-
ENSTTRP00000011071/1-975 DSLPTNPPEP ALCSEYKMQM AIPLGLASAP PSENSSLSST TLLGQGEHCP
bmy_17060T0/1-970 DSLPTNPPEP ALCSEYKMQM AIPLGLASAP PSENSSLSST TLLGQGEHCR
BACU015006/1-78 DSLPTNPPEP ALCSEYKMQM VIPLGLASAP PSENSSLSST TLLGQGEHYR