KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:04 2014 Check: 00 .. Name: ENSBTAP00000053771/1-977 Len: 1000 Check: 1374 Weight: 1.00 Name: ENSTTRP00000011071/1-975 Len: 1000 Check: 5132 Weight: 1.00 Name: bmy_17060T0/1-970 Len: 1000 Check: 2339 Weight: 1.00 Name: BACU015006/1-78 Len: 1000 Check: 6384 Weight: 1.00 // 1 50 ENSBTAP00000053771/1-977 SKLFRLFNEI SFCVTVKSVY CFGLSVLSEP LPLTPESLNV SINSTKQCMH ENSTTRP00000011071/1-975 MALFA-F-QT XXXXXXXXXX XXXXXXLSEP LPLTPGSLKV SVNSTCQCLH bmy_17060T0/1-970 MALFAVF-QT TFLLALLSLR TYESEVLSEP LPLTPESLKV SVNSTRQCLH BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053771/1-977 LQWTVHNPDY HQEFKMVFQI QISRFKASNV IWLENYSTTV KQNQVLHWSW ENSTTRP00000011071/1-975 LQWTVHSLAY HQELKMVFQI QISRFKTSNV IWVENYSTTV KRDQVLHWSW bmy_17060T0/1-970 LQWTVHSLAY HQELKMVFQI QISRFKTSNV IWVENYRTTV KRNRVLHWSW BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000053771/1-977 ESELPLECAI HFVRMRTMVD DARIPAPRLW SNWSSWEKAD AQNSLGDHPL ENSTTRP00000011071/1-975 ESELPLECAA HFIRMRSMVD DARIPKPGFW SNWSSWEEAD AQNLLGHDPL bmy_17060T0/1-970 ESELPLECAA HFIRMRSMVD DAGIPKPGFW SNWSSWEEAD AQNSLGHDPL BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000053771/1-977 YVFPKDKLVE EGSNVTVCYI SRNHQDNISC YLEDVLIYGR QLDQNVWAFE ENSTTRP00000011071/1-975 FVFPKDKLVE EGSNVTICYV SRIHQDNISC YLEGVQIYGE QLDRSVSAFE bmy_17060T0/1-970 FVFPKDKLVE EGSNVTICYV SRIHQDNISC YLEGVQIYGE QLDRSVSAFE BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000053771/1-977 FKNVSFIRKT GTNFYCKGQ- -GDPEGVVLL VS-------- ----KVLEEP ENSTTRP00000011071/1-975 LKNVSFIREK GTNVFCKVDQ GGVLGGIVLF VS-------- ----KVLEEP bmy_17060T0/1-970 LKNVSFIRKR GTNVFCKVDQ GGALGGIVLF VSTKSFICFF LVRTEVLEEP BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000053771/1-977 KNFSCETQDL KTLTCTWDPG NDTGLIQLP- -SYTLFESFS GKKTLCKHRN ENSTTRP00000011071/1-975 KDFSCETQDL KTLTCTWDPG SDTGLSKQPS QSYTLFESFS GKKTLCKHRN bmy_17060T0/1-970 KDFSCETQDL KTLTCTWDPG SDTGLSKQPS QSYTLFESFS GKKTLCKRRN BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000053771/1-977 RCDWQVTQDS QEMYNFTLVA ENYFRKRSVS ILFNLIHGVH PMAPYSLFPK ENSTTRP00000011071/1-975 WCDWQVAQDS QETYNFTLLA ENYFRKRSVS ILFNLTQRVH PMTPYNLLPK bmy_17060T0/1-970 WCNWQVAQDS QETYNFTLVA ENYLRKRSVS ILFNLTQRVH PMTPYNLFPK BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000053771/1-977 SVSATNATVT WKVYSIGSSS ALLCQLQLLG EGKVIQQHNI SVRVNGEYLL ENSTTRP00000011071/1-975 NVGATNATMT WKVHSIGNNS TLLCQLELLA EGKVIQS-NV SIKVNGEYLL bmy_17060T0/1-970 NVGATNATMT WKVHSIGNNS TLLCQLELLA EGKVIQQHNV SIKVNGEYLL BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000053771/1-977 SELKPDTEYM ARVRCAYADH FWKWSELISQ NFTTAEAAPS EAPDVWRDVT ENSTTRP00000011071/1-975 RELEPDTEYV ARVRCAYTNH FWKWSELISQ KFNTAEAAPS EAPDVWRNLK bmy_17060T0/1-970 SELEPDTEYV ARVRCAYTNH FWKWSELISQ KFNTAEAAPS EAPDVWRNMK BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000053771/1-977 FVSGHPTVTL FWKPLSKVHA NGKILFYNVV VENLDEPSSL KVLSVPAPAN ENSTTRP00000011071/1-975 MVSGHPTVSL FWKPLSKVHA NGKILFYNVI VENLDKPSRF EVLSIPAPAS bmy_17060T0/1-970 MVSGHPTVSL FWKPLSKVHA NGKILFYKVI VENLDKPSRL EVLSIPAPAS BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000053771/1-977 STKVTLNQSS YQICVTAHNS VGPSPASTVA ISGHPGNENV EEGRMNGTED ENSTTRP00000011071/1-975 STELTLDQCS YQIHVTAHNS VGPSPASVIV VSGDPGNXXX XXXXXXXXXX bmy_17060T0/1-970 STELTLDQCS YQIHVTAHNS VGPSPASVTV VSGDPGNEEV ESGRVNGTED BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000053771/1-977 GFPMSWKPQS RNATGYVVEW CDSPQHLPCV LRWKNLGPTN TDTVISSGAF ENSTTRP00000011071/1-975 XXXXXXXXXX XDATGYVVEW CDGPQDLPCV LQWKNLGPNT TSTVISSGAF bmy_17060T0/1-970 GFSVSWKPQS GDATGYVVEW CDGPQDLPCV LQWKNLGPNT TSTVISSGAF BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000053771/1-977 RPGVRYNFRI YEISTKRMAH LLEKKAGYLK ELAPSYNPKV NMSNLTSHSF ENSTTRP00000011071/1-975 RPGVRYNFRI YGISTKRMAH LLEKKAGYLE ELAPSDNPQV VMSKLTSHSF bmy_17060T0/1-970 RPGVRYNFRI YEISAKRMAH LLEKKAGYLE ELAPSDNPQV VMSNLTSHSF BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000053771/1-977 TLSWKDYPTE SQTGFIQGYY VYLKSKTGEK CHRGFEKTFL TEKNTDNSVC ENSTTRP00000011071/1-975 TLSWKDYSTE SQPGFIQGYH VYLKPKAGEQ CHPAFEKTVL PE----DSVC bmy_17060T0/1-970 TLSWKDYSTE SQPGFIQGYH VYLKPKAGEQ CPPAFEKTVL PE----DSVC BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000053771/1-977 CKYTIDNPDQ KTFVVKDLQP ESAYEFLVTP YTSAGEGPLD DFRKVTTPDE ENSTTRP00000011071/1-975 CKYTIDNPGQ KTFVVENLQP ESVYEFFVTP YTSVGEGPLD AFTKVTTPDE bmy_17060T0/1-970 CKHTIDNPEQ KTFVVENLQP ESVYEFFVTP YTSVGEGPLD AFTKITTPDE BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000053771/1-977 Y------SHI LIHIILPMVF FVFVIMIICY LKSQWLKDKC YPDIPDPYKS ENSTTRP00000011071/1-975 Y------SHT LIHIILPMIF CVLIVMIICY LKSQWLKEKC YPDSPNPYKS bmy_17060T0/1-970 YYLMEKGPHT DTH------- ---------H PAHDFLRFDC HDN------- BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000053771/1-977 SVLSLIKFKE NPHITIMNVN DCVPDAIEVV NKPEGSKMQF VGTRKSPTET ENSTTRP00000011071/1-975 SVLSLIKSKE NPHLTIMYVN DCVPDAIEVI NKPEGSKIQF LGTRKSLTET bmy_17060T0/1-970 --LLLKKSVE NPHLTIMNVN DCVPDAIEVI NKPEGSKIQF LGTRKSLTET BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000053771/1-977 KGTKPAYLDL LPTEKNYSGP GPCICFENFT YNQAASDLGY CGHFPVTPQA ENSTTRP00000011071/1-975 EFTKPAYLYL LPTEKNYSGP GPCMCFENFT YNQAASDFAS CGHFPVTPQA bmy_17060T0/1-970 EFTKPAYIYL LPTEKNYSGP GPCICFENFT YNQAASDFAS CGHFPVTPQA BACU015006/1-78 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000053771/1-977 PHCQLGPLTS PENLLKTLEQ SYMNSLGEIP AGEANLNYVS QLASPMSGDR ENSTTRP00000011071/1-975 PPHQLGPLTS PENLLKALEQ NYMNSLGEIP AGEANLNYVS QLASPTSGDK bmy_17060T0/1-970 PLHQLGPLTS PENLLKALEQ NYMNSLGEIP AGEANLNYVS QLASPTSGDK BACU015006/1-78 ---------- ---------- --MNSLGEIP AGEANLNYVS QLASPTSGDK 951 1000 ENSBTAP00000053771/1-977 ESPPTNPPEP ALCSEYKMQM AIPLGLASPA RSENSSLSST ALLDPREHC- ENSTTRP00000011071/1-975 DSLPTNPPEP ALCSEYKMQM AIPLGLASAP PSENSSLSST TLLGQGEHCP bmy_17060T0/1-970 DSLPTNPPEP ALCSEYKMQM AIPLGLASAP PSENSSLSST TLLGQGEHCR BACU015006/1-78 DSLPTNPPEP ALCSEYKMQM VIPLGLASAP PSENSSLSST TLLGQGEHYR