KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:04 2014 Check: 00 .. Name: BACU000500/1-309 Len: 314 Check: 2519 Weight: 1.00 Name: ENSP00000286688/1-207 Len: 314 Check: 8311 Weight: 1.00 Name: ENSBTAP00000053773/1-207 Len: 314 Check: 7434 Weight: 1.00 Name: bmy_10566T0/1-209 Len: 314 Check: 3655 Weight: 1.00 Name: ENSTTRP00000011084/1-207 Len: 314 Check: 8025 Weight: 1.00 // 1 50 BACU000500/1-309 MAKDLDELLD EVESKFCRPD PLRLGMVERP RGGGGGGGIL SNDRSRAEAK ENSP00000286688/1-207 MAEDLDELLD EVESKFCTPD LLRRGMVEQP KGCGG--GTH SSDRNQAKAK ENSBTAP00000053773/1-207 MAEDLDELLD EVESKFCRPD PLRLGTVERP RGGGG--GFF GHDQNRAEAK bmy_10566T0/1-209 MAKDLDELLD EVESKFCRPD PLRLGMVERP RGGGGGGGIL SNDRNRAEAK ENSTTRP00000011084/1-207 MAKDLDELLD EVESKFCRPD PLRLGMVERP RGGGG--GIL SNDRNRAEAE 51 100 BACU000500/1-309 ENLRSTETFK KEHDLDSLIN EIFEEPNFDK KRFKLKSKSS GNTSVRASFQ ENSP00000286688/1-207 ETLRSTETFK KEDDLDSLIN EILEEPNLDK KPSKLKSKSS GNTSVRASIE ENSBTAP00000053773/1-207 ENLRSAETFE KEDDLDSLIN EIFEEPHFDK KHFKLKSKSS GNTSVRASIQ bmy_10566T0/1-209 ENLRSTETFK KEHDLDSLIN EIFEEPNFDK KRFKLKSKSS GNTSVRASFQ ENSTTRP00000011084/1-207 ENLRSTETFK KEHDLDSLIN EIFEEPNFDK KCFKLKSKSS GNTSVRAYIQ 101 150 BACU000500/1-309 GLGKSCSPVY LGGSAVPCGI GTNTSQSLAE KNLVPDGMSM YVYYITLIHE ENSP00000286688/1-207 GLGKSCSPVY LGGSSIPCGI GTNISW---- ---------- ---------- ENSBTAP00000053773/1-207 GLGKSCSPVY IGGSTVPCGI GTNASP---- ---------- ---------- bmy_10566T0/1-209 GLGKSCSPVY LGGSAVPCGI GTNTSQ---- ---------- ---------- ENSTTRP00000011084/1-207 GPGKSCSPVY LGGSAVPCGV GTNTSQ---- ---------- ---------- 151 200 BACU000500/1-309 NAIVFRPRSY LLHSDKKGKH IQFAYICTGV FDSGQYQTSK CRHLRAELVQ ENSP00000286688/1-207 ---------- ---------- ---------- --------RA CDHLRC--IA ENSBTAP00000053773/1-207 ---------- ---------- ---------- --------RA CDHLRC--TA bmy_10566T0/1-209 ---------- ---------- ---------- --------RA CDHLRC--IA ENSTTRP00000011084/1-207 ---------- ---------- ---------- --------RA CDHLRC--IA 201 250 BACU000500/1-309 GDFPESCPKS CRDFGGDAHT ASMCHYSHLH ARYLSLLDWK ILEGKGHTDF ENSP00000286688/1-207 CDFLVV---S YDDYMWDKS- ---CDYLFFR N--------- ---------- ENSBTAP00000053773/1-207 CDFWVE---S YDDYRWDKS- ---CDYLFFR N--------- ---------- bmy_10566T0/1-209 CDFWVV---S YDDYGWDKS- ---CDYLFFR N--------- ---------- ENSTTRP00000011084/1-207 CDFWVV---S CDDYGWDKS- ---CDYLFFR N--------- ---------- 251 300 BACU000500/1-309 IFDVPQSNQH SVLTRKSRLL KKTPS-LFPE LCFFHRIEDA VVAP----LG ENSP00000286688/1-207 --NMPEFHKL -----KAKLI KKKGTRAYAC QCSWRTIEEV TDLQTDHQLR ENSBTAP00000053773/1-207 --NMPEFHKL -----KTKLV KKKGTRAYAC QCSWKAVEEL TDLQTDHQLR bmy_10566T0/1-209 --NMPEFHKL -----KTKLV KKKGTRAYAC QCSWRTVGEL TDLQTDHHLR ENSTTRP00000011084/1-207 --NMPEFHKL -----KTKLV KKKGTRAYAC QCSWRTIEEL TDLQTDHHLR 301 350 BACU000500/1-309 WSCETCSTHD LQVT ENSP00000286688/1-207 WVCGKH---- ---- ENSBTAP00000053773/1-207 WVCGKH---- ---- bmy_10566T0/1-209 WVCGKH---- ---- ENSTTRP00000011084/1-207 WVCGKH---- ----