KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:15 2014 Check: 00 .. Name: ENSP00000467556/1-1502 Len: 1539 Check: 3343 Weight: 1.00 Name: ENSBTAP00000053787/1-1509 Len: 1539 Check: 354 Weight: 1.00 Name: ENSTTRP00000009987/1-1480 Len: 1539 Check: 2548 Weight: 1.00 Name: bmy_11388T0/1-1345 Len: 1539 Check: 9443 Weight: 1.00 Name: BACU008425/1-1534 Len: 1539 Check: 5950 Weight: 1.00 // 1 50 ENSP00000467556/1-1502 MADRFSRFNE DRDFQGNHFD QYEEGHLEIE QASLDKPIES DNIGHRLLQK ENSBTAP00000053787/1-1509 LVSNFNVYHK SCFFQGNHFD QYEEGHLEIE QASLDKPIES DNIGHRLLQK ENSTTRP00000009987/1-1480 ---------- -----GNHFD QYEEGHLEIE QASLDKPIES DNIGHRLLQK bmy_11388T0/1-1345 ---------- ---------- ---------- ---------- ---------- BACU008425/1-1534 --MLSEKITV VLFFQGNHFD QYEEGHLEIE QASLDKPIES DNIGHRLLQK 51 100 ENSP00000467556/1-1502 HGWKLGQGLG KSLQGRTDPI PIVVKYDVMG MGRMEMELDY AEDATERRRV ENSBTAP00000053787/1-1509 HGWKLGQGLG KSLQGRTDPI PIVVKYDVMG MGRMEMELDY AEDATERRRV ENSTTRP00000009987/1-1480 HGWKLGQGLG KSLQGRTDPI PIVVKYDVMG MGRMEMELDY AEDATERRRV bmy_11388T0/1-1345 ---------- ---------- ---------- ---------- ---------- BACU008425/1-1534 HGWKLGQGLG KSLQGRTDPI PIVVKYDVMG MGRMEMELDY AEDATERRRV 101 150 ENSP00000467556/1-1502 LEVEKEDTEE LRQKYKDYVD KEKAIAKALE DLRANFYCEL CDKQYQKHQE ENSBTAP00000053787/1-1509 LEVEKEDTEE LRQKYKDYVD KEKAIAKALE DLRANFYCEL CDKQYQKHQE ENSTTRP00000009987/1-1480 LEVEKEDTEE LRQKYKXXXX XXXXXXXXXX XXXXXXXXXX XXXQYQKHQE bmy_11388T0/1-1345 ---------- ---------- ---------- ---------- ---------- BACU008425/1-1534 LEVEKEDTEE LRQKYKDYVD KEKAIAKALE DLRANFYCEL CDKQYQKHQE 151 200 ENSP00000467556/1-1502 FDNHINSYDH AHKQ------ ---------- ---------- ---RLKDLKQ ENSBTAP00000053787/1-1509 FDNHINSYDH AHKQ------ ---------- ---------- ---RLKDLKQ ENSTTRP00000009987/1-1480 FDNHINSYDH AHKQ------ ---------- ---------- ---RLKDLKQ bmy_11388T0/1-1345 ---------- ---Q------ ---------- ---------- ---RLKDLKQ BACU008425/1-1534 FDNHINSYDH AHKQEGTQDY YESEIIADVL KANPSNLGAQ ITRRLKDLKQ 201 250 ENSP00000467556/1-1502 REFARNVSSR SRKDEKKQEK ALRRLHELAE QRKQAECAPG SGPMFKPTTV ENSBTAP00000053787/1-1509 REFARNVSSR SRKDEKKQEK ALRRLHELAE QRKQAECAPG SGPMFRPTTV ENSTTRP00000009987/1-1480 REFARNVSSR SRKDEKKQEK ALRRLHELAE QRKQAECAPG SGPMFRPTTV bmy_11388T0/1-1345 REFARNVSSR SRKDEKKQEK ALRRLHELAE QRKQAECAPG SGPMFRPTTV BACU008425/1-1534 REFARNVSSR SRKDEKKQEK ALRRLHELAE QRKQAECAPG SGPMFRPTTV 251 300 ENSP00000467556/1-1502 AVDEEGGEDD KDESATNSGT GATASCGLGS EFSTDKGGPF TAVQITNTTG ENSBTAP00000053787/1-1509 AVDEEAGDDE KDESATNSGT STAAACGLGS EFSTDKGGPF TAVQITNTTG ENSTTRP00000009987/1-1480 AVDEEGGDDD KEESATNSGT SATATCGLGS EFSTDKGGPF TAVQITNTTG bmy_11388T0/1-1345 AVDEEGGDDD KEESATNSGT SATATCGLGS EFSTDKGGPF TAVQITNTTG BACU008425/1-1534 AVDEEGGDDD KEESATNSGT CATATCGLGS EFSTDKGGPF TAVQITNTTG 301 350 ENSP00000467556/1-1502 LAQAPGLASQ GISFGIKNNL GTPLQKLGVS FSFAKKAPVK LESIASVFKD ENSBTAP00000053787/1-1509 LAQAPGPASQ GISFGIKNNL GTPLQKLGVS FSFAKKAPVK LESIASVFKD ENSTTRP00000009987/1-1480 QAQSPGLVSQ GVSFGIKNNL GTPLQKLGVS FSFAKKAPVK LESIASVFKD bmy_11388T0/1-1345 LTQSPGLASQ GISFGIKNNL GTPLQKLGVS FSFAKKAPVK LESIASVFKD BACU008425/1-1534 LTQSPGLASQ GISFGIKNNL GTPLQKLGVS FSFAKKAPVK LESIASVFKD 351 400 ENSP00000467556/1-1502 HAEEGTSEDG TKPDEKSSDQ GLQKVGDSDG SSNLDGKKED EDPQDGGSLA ENSBTAP00000053787/1-1509 HAEEGTSDDG TKADEKGADQ GLQKVGDSDG SSNLDGKKED EDPQDGGSLA ENSTTRP00000009987/1-1480 HAEEGTSEDG TKADEKGTDQ GLQKVGDSDG SSNLDGKKED EDPQDGGSLA bmy_11388T0/1-1345 HAEEGTSEDG TKADEKGTDQ GLQKMGDSDG SSNLDGKKED EDPQDGGSLA BACU008425/1-1534 HAEEGTSEDG TKADEKGADQ GLQKMGDSDG SSNIDGKKED EDPQDGGSLA 401 450 ENSP00000467556/1-1502 STLSKLKRMK REEGAGATEP EYYHYIPPAH CKVKPNFPFL LFMRASEQMD ENSBTAP00000053787/1-1509 STLSKLKRMK REEGAGATEP EYYHYIPPAH CKVKPNFPFL LFMRASEQME ENSTTRP00000009987/1-1480 STLSKLKRMK REEGAGATEP EYYHYIPPAH CKVKPNFPFL LFMRASEQME bmy_11388T0/1-1345 STLSKLKRMK REEGAGATEP EYYHYIPPAH CKVKPNFPFL LFMRASEQME BACU008425/1-1534 STLSKLKRMK REEGAGATEP EYYHYIPPAH CKVKPNFPFL LFMRASEQME 451 500 ENSP00000467556/1-1502 GDNTTHPKNA PESKKGSSPK PKSCIKAAAS QGAEKTVSEV SEQPKETSMT ENSBTAP00000053787/1-1509 GDNSTHPKNA LDSKKSSSPK PKGCIKVTAS QGPEKTVSEV SEQQMETSAA ENSTTRP00000009987/1-1480 GDNSAHPKNA LDSKKSSSPK PKGCIKVAAS QGAEKTVGEV SEQQMETSVA bmy_11388T0/1-1345 GDNSTHPKNA LDSKKSSSPK PKGCIKVAAS QGAEKTVGEV SEQQMETSVA BACU008425/1-1534 GDNSTHPKNA LDSKKSSSPK PKGCIKVAAS QGAEKTVGEV SEQQMETSVA 501 550 ENSP00000467556/1-1502 EPSEPGSKAE AKKALGGDVS DQSLESHSQK VSETQMCESN SSKETSLATP ENSBTAP00000053787/1-1509 EPSEPGSKAE TKKPSGGDVS EHSLEIQSQK DSEIQMCESD PHKETSQATP ENSTTRP00000009987/1-1480 EPSEPESKAE TKKASGGDVS EHSLESQSQK DSEIQMCESN PPKEISQATP bmy_11388T0/1-1345 EPSEPESKAE TKKASGGDVS EHSLESQSQK DSEIQMCESN PPKEISQATP BACU008425/1-1534 EPSEPESKAE TKKASGGDVS EHSLESQSQK DSEIQMCESN PPKEISQATP 551 600 ENSP00000467556/1-1502 AGKESQEGPK HPTGPFFPVL SKDESTALQW PSELLIFTKA EPSISYSCNP ENSBTAP00000053787/1-1509 AGRESREGPK HPTGPFFPVL SKDESTALQW PSELLIFTKA EPSISYSCNP ENSTTRP00000009987/1-1480 AGKESQEGPR HPTGPFFPVL SKDESTALQW PSELLIFTKA EPSISYSCNP bmy_11388T0/1-1345 AGKESQEGPK HPTGPFFPVL SKDESTALQW PSELLIFTKA EPSISYSCNP BACU008425/1-1534 AGKESQEGPK HPTGPFFPVL SKDESTALQW PSELLIFTKA EPSISYSCNP 601 650 ENSP00000467556/1-1502 LYFDFKLSRN KDARTKGTEK PKDIGSSSKD HLQGLDPGEP NKSKEVGGEK ENSBTAP00000053787/1-1509 LYFDFKLSRN KDARAKGTEK PKDIGGSSKD HLQGLDPSEL HKSQE-EEES ENSTTRP00000009987/1-1480 LYFDFKLSRN KDARAKGTEK PKDIGGSSKD HLQNLDPSEP NKSKE-EGEN bmy_11388T0/1-1345 LYFDFKLSRN KDARAKGTEK PKDIGGTSKD HLQSLDPSEA NKSKE-EGEN BACU008425/1-1534 LYFDFKLSRN KDARAKGTEK PKDIGGSSKD HLQSLDPSEP NKSKE-EGEN 651 700 ENSP00000467556/1-1502 IVRSSGGRMD APASGSACSG LNKQEPGGSH GSETEDTGRS LPSKKERSGK ENSBTAP00000053787/1-1509 VQHSSGGRID APASGAACSG LNKQEPGGSH GSETEDTGRS LPSKKERSGK ENSTTRP00000009987/1-1480 VEHSSGGRID APAPGSACSG LNKQEPGGSH GSETEDTGRS LPSKKERSGK bmy_11388T0/1-1345 VEHSSGGRID APASGSACSG LNKQEPGGSH GSETEDTGRS LPSKKERSGK BACU008425/1-1534 VEHSSGGRID APASGSACSS LNKQEPGGSH GSETEDTGRS LPSKKERSGK 701 750 ENSP00000467556/1-1502 SHRHKKKKKH KKSSKHKRKH KADTEEKSSK AESGEKSKKR KKRKRKKNKS ENSBTAP00000053787/1-1509 SHRHKKKKKH KKSSKHKRKH RADPEEKSSK AESGEKSKKR KKRKRKKNKS ENSTTRP00000009987/1-1480 SHRHKKKKKH KKSSKHKRKH KPDPEEKSSK AESGEKSKKR KKRKRKKNKS bmy_11388T0/1-1345 SHRHKKKKKH KKSSKHKRKH KPDPEEKSSK AESGEKSKKR KKRKRKKNKS BACU008425/1-1534 SHRHKKKKKH KKSSKHKRKH KPDPEEKSSK AESGEKSKKR KKRKRKKNKS 751 800 ENSP00000467556/1-1502 SAPADSERGP KPEPPGSGSP APPRRRRRAQ DDSQRRSLPA EEGSSGKKDE ENSBTAP00000053787/1-1509 SAPADSERGP KPEPPGSGSP APPRRRRRAQ DDSQRRSLPA EEGSSGKKDE ENSTTRP00000009987/1-1480 SAPADSERGP KPEPPGSGSP APPRRRRRAQ DDSQRRSIPA EEGSSGKKDE bmy_11388T0/1-1345 SAPADSERGP KPEPPGSGSP APPRRRRRAQ DDSQRRSIPA EEGSSGKKDE BACU008425/1-1534 SAPADSERGP KPEPPGSGSP APSRRRRRAQ DDSQRRSIPA EEGSSGKKDE 801 850 ENSP00000467556/1-1502 GGGGSSSQDH GGRKHKGELP PSSCQRRAGT KRSSRSSHRS QPSSGDEDSD ENSBTAP00000053787/1-1509 GGGSGSAQDH SGRKHRGEPP ASSCQRRAGT KRSSRSSHRS RPSSGDEDSD ENSTTRP00000009987/1-1480 GGGGGSSQDH GGRKHKGEPP TSSCQQRASS KRSSRSSHRS RPSSGDEDSD bmy_11388T0/1-1345 GGGGGSSQDH GGRKHKGEPP TSSCQQRASS KWSSRSSHRS RPSSGDEDSD BACU008425/1-1534 GGGGGSSQDH GGRKHKGEPP TSSCQQRASS KWSSRSSHRS RPSSGDEDSD 851 900 ENSP00000467556/1-1502 DASSHRLHQK SPSQYS---- -EEEEEEDSG SEHSRSRSRS GRRHSSHRSS ENSBTAP00000053787/1-1509 DASSRRLHQK SPSQYSEEEE EEEEEEEESG SEHSRSRSRS GRHHSSRHSS ENSTTRP00000009987/1-1480 DASSRRLHQK SPSQYS-EEE EEEEEEEESG SEHSRSRSRS GRHHSSRRSS bmy_11388T0/1-1345 DASSRRLHQK SPSQYS-EEE EEEEEEEESG SEHSRSRSRS GRHHSSRRSS BACU008425/1-1534 DASSRRLHQK SPSQYS-EEE EEEEEEEESG SEHSRSRSRS GRHHSSRRSS 901 950 ENSP00000467556/1-1502 RRSYSSSSDA SSDQSCYSRQ RSYSDDSYSD YSDRSRRHSK RSHDSDDSDY ENSBTAP00000053787/1-1509 RRSYSSSSDA SSDQSCYSRQ HSYSDDSYSD YSDRSRRHSK RSHDSDDSDY ENSTTRP00000009987/1-1480 RRSYSSSSDA SSDQSCYSRQ HSYSDDSYSD YSDRSRRHSK RSHDSDDSDY bmy_11388T0/1-1345 RRSYSSSSDA SSDQSCYSRQ HSYSDDSYSD YSDRSRRHSK RSHDSDDSDY BACU008425/1-1534 RRSYSSSSDA SSDQSCYSRQ HSYSDDSYSD YSDRSRRHSK RSHDSDDSDY 951 1000 ENSP00000467556/1-1502 ASSKHRSKRH KYSSSDDDYS LSCSQSRSRS RSHTRERSRS RGRSRSSSCS ENSBTAP00000053787/1-1509 ASSKHRSKRH KYSSSDDDYS LSGSQSRSRS RSHTRERSRS RGRSRSSSCS ENSTTRP00000009987/1-1480 TSSKHRSKRH KYSSSDDDYS LSCSQSRSRS RSHTRERSR- QGRSRSSSCS bmy_11388T0/1-1345 TSSKHRSKRH KYSSSDDDYS LSCSQSRSRS RSHTRERSRS RGRSRSSSCS BACU008425/1-1534 TSSKHRSKRH KYSSSDDDYS LSCSQSRSRS RSHTRERSRS RGRSRSSSCS 1001 1050 ENSP00000467556/1-1502 RSRSKRRSRS TTAHSWQRSR SYSRDRSRST RSPSQRSGSR KRSWGHESPE ENSBTAP00000053787/1-1509 RSRSKRRSRS TTAHSWQRSR SYSRDRSRST RSPSQRSGSR KGSWGHESPE ENSTTRP00000009987/1-1480 RSR------- ----SWQRSR SYSRDRSCST RSPSQRSGSR KGSWGHESPE bmy_11388T0/1-1345 RSRSKRRSRS TTAHSWQRSR SYSRDRSRST RSPSQRSGSR KGSWGHESPE BACU008425/1-1534 RSRSKRRSRS TTAHSWQRSR SYSRDRSRST RSPSQRSGSR KGSWGHESPE 1051 1100 ENSP00000467556/1-1502 ERHSGRRDFI RSKIYRSQSP HYFRSGRGEG PG--KKDDGR GDDSKATGPP ENSBTAP00000053787/1-1509 ERRSGRRDFI RSKIYRSQSP HYFRSGRGEG PGEKKKEDGR GDDGKGIGPP ENSTTRP00000009987/1-1480 ERRSGRRDFI RSKIYRSQSP HYFRSGRGEG SGEKKKEDGR GDDGKGIGPP bmy_11388T0/1-1345 ERRSGRRDFI RSKIYRSQSP HYFRSGRGEG SGEKKKEDGR GDDGKGIGPP BACU008425/1-1534 ERRSGRRDFI RSKIYRSQSP HYFRSGRGEG SGEKKKEDGR GDDGKGIGPP 1101 1150 ENSP00000467556/1-1502 SQNSNIGTGR GSEGDCSPED KNSVTAKLLL EKIQSRKVER KPSVSEEVQA ENSBTAP00000053787/1-1509 SQNSSVGPGR GSEGDCSPED KNSVTAKLLL EKIQSRKVER KPSMSEEVLA ENSTTRP00000009987/1-1480 SQNSSTGPGR GSEGDCSPED KNSVTAKLLL EKIQSRKVER KPSVSEEVLA bmy_11388T0/1-1345 SQNSNTGPGR GSEGDCSPED KNSVTAKLLL EKIQSRKVER KPSVSEEVLA BACU008425/1-1534 SQNSNTGPGR GSEGDCNPED KNSVTAKLLL EKIQSRKVER KPSVSEEVLA 1151 1200 ENSP00000467556/1-1502 TPNKAGPKLK DPPQGYFGPK LPPSLGNKPV LPLIGKLPAT RKPN-KKCEE ENSBTAP00000053787/1-1509 TPNKAGLKLK DPPQGYFGPK LPPSLGNKPV LPLIGKLPAT RKPNAKKCEE ENSTTRP00000009987/1-1480 TPNKAGLKLK DPPQGYFGPK LPSSLGNKPV LPLIGKLPAT RKPNIKKCEE bmy_11388T0/1-1345 TPNKAGLKLK DPPQGYFGPK LPPSLGNKPV LPLIGKLPAT RKPNTKKCEE BACU008425/1-1534 TPNKAGLKLK DPPQGYFGPK LPPSLGNKPV LPLIGKLPAT RKPNTKKCEE 1201 1250 ENSP00000467556/1-1502 SGLERGEEQE QSETEEGPPG SSDALFGHQF PSEETTGPLL DPPPEESKSG ENSBTAP00000053787/1-1509 SGLERGEEQE QSETEEGPPG NSDAPFGHQF PSEETAGPLS DPPPEEPKSE ENSTTRP00000009987/1-1480 SGLERGEEQE QSETEEGPPG NSDAPFGHQF -SEETAGPLS DPPPEEPKSE bmy_11388T0/1-1345 SGLERGEEQE QSETEEGPPG NSDAPFGHQF SSEETAGPLS DPPPEEPKSE BACU008425/1-1534 SGLERGEEQE QSETEEGPPG NSDAPFGHQF -SEETAGPLS DPPPEEPKSE 1251 1300 ENSP00000467556/1-1502 EATADHPVAP LGTPAHSDCY PGDPTISHNY LPDPSDGDTL ESLDSSSQPG ENSBTAP00000053787/1-1509 EATADHPVAP LGTPVHSDCY PGDPSISHNY LPDPSDGDTL ESLDSGSQPG ENSTTRP00000009987/1-1480 EATADHPVAP LGTPVHSDCY PGDPSISHNY LPDPSDGDTL ESLDSGSQPG bmy_11388T0/1-1345 EATADHPVAP LGTPVHSDCY PGDPSISHNY LPDPSDGDTL ESLDSGSQPG BACU008425/1-1534 EATADHPVAP LGTPVHSDCY PGDPSISHNY LPDPSDGDTL ESLDSGSQPG 1301 1350 ENSP00000467556/1-1502 PVESSLLPIA PDLEHFPSYA PPSGDPSIES TDGAEDASLA PLESQPITFT ENSBTAP00000053787/1-1509 PVESSLLPIA SDLEPFPGYA PPSGEPSIES VDGAEDASLA PLESQPITFT ENSTTRP00000009987/1-1480 PVESSLLPIA SDLEHFPSYA PPSGEPSIES ADGVEDASLA PLESQPITFT bmy_11388T0/1-1345 PVESSLLPIA SDLEHFPSYA PPSGEPSIES ADGVEDASLA PLESQPITFT BACU008425/1-1534 PVESSLLPIA SDLEHFPSYA PPSGEPSIES ADGVEDASLA PLESQPITFT 1351 1400 ENSP00000467556/1-1502 PEEMEKYSKL QQAAQQHIQQ QLLAKQVKAF PASAALAPAT PALQPIHIQQ ENSBTAP00000053787/1-1509 PEEMEKYSKL QQAAQQHIQQ QLLAKQVKAF PASAALAPAT PALQPIHIQQ ENSTTRP00000009987/1-1480 PEEMEKYSKL QQAAQQHIQQ QLLAKQVKAF PASAALAPAT PALQPIHIQQ bmy_11388T0/1-1345 PEEMEKYSKL QQAAQQHIQQ QLLAKQVKAF PASAALAPAT PALQPIHIQQ BACU008425/1-1534 PEEMEKYSKL QQAAQQHIQQ QLLAKQVKAF PASAALAPAT PALQPIHIQQ 1401 1450 ENSP00000467556/1-1502 PATASATSIT TVQHAILQHH AAAAAAAIGI HPHPHPQPLA QVHHIPQPHL ENSBTAP00000053787/1-1509 PATASATSIT TVQHAILQHH AAAAAAAIGI HPHPHPQPLA QVHHIPQPHL ENSTTRP00000009987/1-1480 PATASATSIT TVQHAILQHH AAAAAAAIGI HPHPHPQPLA QVHHIPQPHL bmy_11388T0/1-1345 PATASATSIT TVQHAILQHH AAAAAAAIGI HPHPHPQPLA QVHHIPQPHL BACU008425/1-1534 PATASATSIT TVQHAILQHH AAAAAAAIGI HPHPHPQPLA QVHHIPQPHL 1451 1500 ENSP00000467556/1-1502 TPISLSHLTH SIIPGHPATF LASHPIHIIP ASAIHPGPFT FHPVPHAALY ENSBTAP00000053787/1-1509 TPISLSHLTH SIIPGHPATF LASHPIHIIP ASAIHPGPFT FHPVPHAALY ENSTTRP00000009987/1-1480 TPISLSHLTH SIIPGHPATF LASHPIHIIP ASAIHPGPFT FHPVPHAALY bmy_11388T0/1-1345 TPISLSHLTH SIIPGHPATF LASHPIHIIP ASAIHPGPFT FHPVPHAALY BACU008425/1-1534 TPISLSHLTH SIIPGHPATF LASHPIHIIP ASAIHPGPFT FHPVPHAALY 1501 1550 ENSP00000467556/1-1502 PTLLAPRPAA AAATALHLHP LLHPIFSGQD LQHPPSHGT ENSBTAP00000053787/1-1509 PTLLAPRPAA AAATALHLHP LLHPIFSGQD LQHPPSHGT ENSTTRP00000009987/1-1480 PTLLAPRPAA AAATALHLHP LLHPIFSGQD LQHPPSHGT bmy_11388T0/1-1345 PTLLAPRPAA AAATALHLHP LLHPIFSGQD LQHPPSHGT BACU008425/1-1534 PTLLAPRPAA AAATALHLHP LLHPIFSGQD LQHPPSHGT