KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:16 2014 Check: 00 .. Name: ENSTTRP00000011785/1-336 Len: 340 Check: 6783 Weight: 1.00 Name: ENSBTAP00000053789/1-288 Len: 340 Check: 6721 Weight: 1.00 Name: ENSP00000364883/1-339 Len: 340 Check: 2728 Weight: 1.00 Name: bmy_15077T0/1-339 Len: 340 Check: 6814 Weight: 1.00 Name: BACU015645/1-141 Len: 340 Check: 1589 Weight: 1.00 // 1 50 ENSTTRP00000011785/1-336 -MAAAATAPG AL--VLAGRA RLMAACCARL GPGWRLSRXX XXXXXXXXXX ENSBTAP00000053789/1-288 MAVAASAAPG ALGTLQASRA RLVAACCTRL GARCRLP-GS WTCPRVDST- ENSP00000364883/1-339 MAAAVAAAPG ALGSLHAGGA RLVAACSAWL CPGLRLP-GS LAGRRAGPAI bmy_15077T0/1-339 MAAAAAAAPG ALGTLQAGRA RLVAACSARL GPGWRLS-GS WTAPRVDPAI BACU015645/1-141 MAAAAAAAPG ALGTLQAGRA RLVAACCARL GPGWRLS-GS WTVPRVDPAI 51 100 ENSTTRP00000011785/1-336 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI VVLGINRAY- ENSBTAP00000053789/1-288 WARGWTPAAG KAAWQRGYSA EVKTEDELRV WYLEEENRGI VVLGINRAYA ENSP00000364883/1-339 WAQGWVPAAG GPAPKRGYSS EMKTEDELRV RHLEEENRGI VVLGINRAYG bmy_15077T0/1-339 WARGWTPAAG GAAWRRGYSS EVKTEDELRV RYLEEENRGI VVLGINRAYA BACU015645/1-141 WARGWTHAAG GAAWRRGYSS EVKTEDELRV RYLEEENRGI VVLGINRAYA 101 150 ENSTTRP00000011785/1-336 QNSLSTNLIK MLSKAVDALK SDKKVRTIIV RSEVPGIFCA GADLKERVKM ENSBTAP00000053789/1-288 KNSLSKNLIK MLSRAVDALK SDKKVRTIIV RNEVPGIFCA GADLKERAKM ENSP00000364883/1-339 KNSLSKNLIK MLSKAVDALK SDKKVRTIII RSEVPGIFCA GADLKERAKM bmy_15077T0/1-339 KNSLSTNLIK MLSKAVDALK SDKKVRTIIV RSEVPGIFCA GADLKERVKM BACU015645/1-141 KNSLSTNLIK MLSKAVDALK SDKKVRTIIV RSEVPGIFCA GM-------- 151 200 ENSTTRP00000011785/1-336 NSSEVGPFVS KIRAVINEIA NLPVPTIXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053789/1-288 SSSEVGPFVS KIRAMINEI- ---------- ---------- ---------- ENSP00000364883/1-339 SSSEVGPFVS KIRAVINDIA NLPVPTIAAI DGLALGGGLE LALACDIRVA bmy_15077T0/1-339 NSSEVGPFVS KIRAVINEIA NLPVPTIAAI DGLALGGGLE LALACDIRVA BACU015645/1-141 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000011785/1-336 XSSAKMGLVE TKLAIIPGGG GTQRLPRAIG MSLAKELIFS ARVLDGQAAK ENSBTAP00000053789/1-288 ---------- ---------G GTQRLPRAIG MSLGKELIFS ARVLDGQEAK ENSP00000364883/1-339 ASSAKMGLVE TKLAIIPGGG GTQRLPRAIG MSLAKELIFS ARVLDGKEAK bmy_15077T0/1-339 ASSAKMGLVE TKLAIIPGGG GTQRLPRAIG MSLAKELIFS ARVLDGQAAK BACU015645/1-141 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000011785/1-336 AVGLISHVLE QNEEGDAAYR KALDLAREFL PQGPVAMRVA KLAINQGMEX ENSBTAP00000053789/1-288 SVGLISHVLE QNQEGDAAYR KALDLAREFL PQGPVAMTVA KLAINQGMEV ENSP00000364883/1-339 AVGLISHVLE QNQEGDAAYR KALDLAREFL PQGPVAMRVA KLAINQGMEV bmy_15077T0/1-339 AVGLISHVLE QNQEGDAAYR KALDLAREFL PQGPVAMRVA KLAINQGMEV BACU015645/1-141 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000011785/1-336 XXXXXXXXXX XXXXXTIPTK DRLEGLLAFK EKRTPRYKGE ENSBTAP00000053789/1-288 DLVTGLAIEE ACYAQTIPTK DRLEGLLAFK EKRTPHYKGE ENSP00000364883/1-339 DLVTGLAIEE ACYAQTIPTK DRLEGLLAFK EKRPPRYKGE bmy_15077T0/1-339 DLVTGLAIEE ACYAQTIPTK DRLEGLLAFK EKRTPRYKGE BACU015645/1-141 ---------- ---------- ---------- ----------