KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:23 2014 Check: 00 .. Name: ENSTTRP00000011042/1-1097 Len: 1214 Check: 5446 Weight: 1.00 Name: ENSP00000039989/1-1141 Len: 1214 Check: 7715 Weight: 1.00 Name: bmy_10491T0/1-606 Len: 1214 Check: 293 Weight: 1.00 Name: BACU008925/1-1198 Len: 1214 Check: 3249 Weight: 1.00 Name: ENSBTAP00000053799/1-1198 Len: 1214 Check: 2981 Weight: 1.00 // 1 50 ENSTTRP00000011042/1-1097 MAAAVGVRGR CELPPCSSPG WFLSLSALLS VAARGAFATT HWVVTEDGKI ENSP00000039989/1-1141 MAAAVGVRGR YELPPCSGPG WLLSLSALLS VAARGAFATT HWVVTEDGKI bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 MAAAVGVRGR CELPPCSSPG WFLSLSALLS VAARGAFATT HWVVTEDGKI ENSBTAP00000053799/1-1198 MAVAVGVRGR CELPPCSSPG WFLSLSALLS VAARGAFATT HWVVTEDGKI 51 100 ENSTTRP00000011042/1-1097 QQQVDSPMNL KHPHDLVILM RQETTVNYLK ELEXXXXXXX XXXXXXXXXX ENSP00000039989/1-1141 QQQVDSPMNL KHPHDLVILM RQEATVNYLK ELEKQLVAQK IHIEENEDRD bmy_10491T0/1-606 -------MNL KHPHDLVILM RQETTVNYLK ELEKQLVAQK IHIEENEDRD BACU008925/1-1198 QQQVDSPMNL KHPHDLVILM RQETTVNYLK ELEKQLVAQK IHIEENEDRD ENSBTAP00000053799/1-1198 QQQVDSPMNL KHPHDLVILM RQETTVNYLK ELEKQLVAQK IHIEENEDRD 101 150 ENSTTRP00000011042/1-1097 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PEDYIDTESP ENSP00000039989/1-1141 TGLEQRHNKE DPDCIKAKVP LGDLDLYDGT YITLESKDIS PEDYIDTESP bmy_10491T0/1-606 TGLEQRHNKE DPDCIKAKVP LGDLDLYDGT YITLESKDIS PEDYIDTESP BACU008925/1-1198 TGLEQRHNKE DPDCIKAKVP LGDLDLYDGT YITLESKDIS PEDYIDTESP ENSBTAP00000053799/1-1198 TGLEQRHNKE DPDCIKAKVP LGDLDLYDGT YITLESKDIS PEDYIDTESP 151 200 ENSTTRP00000011042/1-1097 VPPDPEQPDC TKILELPYSI HAFQHLRGVQ ERVNLSAPLL PKEDPIFTYL ENSP00000039989/1-1141 VPPDPEQPDC TKILELPYSI HAFQHLRGVQ ERVNLSAPLL PKEDPIFTYL bmy_10491T0/1-606 VPPDPEQPDC TKILELPYSI HAFQHLRGVQ ERVNLSAPLL PKEDPIFTYL BACU008925/1-1198 VPPDPEQPDC TKILELPYSI HAFQHLRGVQ ERVNLSAPLL PKEDPIFTYL ENSBTAP00000053799/1-1198 VPPDPEQPDC TKILELPYSI HAFQHLRGVQ ERVNLSAPLL PKEDPIFTYL 201 250 ENSTTRP00000011042/1-1097 SKRLGRSIDD IGHLIHEGLQ KNSSSWVLYN MASFYWRIKN EPYQVVECAM ENSP00000039989/1-1141 SKRLGRSIDD IGHLIHEGLQ KNTSSWVLYN MASFYWRIKN EPYQVVECAM bmy_10491T0/1-606 SKRLGRSIDD IGHLIHEGLQ KNSSSWVLYN MASFYWRIKN EPYQVVECAM BACU008925/1-1198 SKRLGRSIDD IGHLIHEGLQ KNSSSWVLYN MASFYWRIKN EPYQVVECAM ENSBTAP00000053799/1-1198 SKRLGRSIDD IGHLIHEGLQ KNSSSWVLYN MASFYWRIKN EPYQVVECAM 251 300 ENSTTRP00000011042/1-1097 RALHFSSRHN KDIALVNLAN VLHRAHFSAD AAVVVHAALD DSDFFTSYYT ENSP00000039989/1-1141 RALHFSSRHN KDIALVNLAN VLHRAHFSAD AAVVVHAALD DSDFFTSYYT bmy_10491T0/1-606 RALHFSSRHN KDIALVNLAN VLHRAHFSAD AAVVVHAALD DSDFFTSYYT BACU008925/1-1198 RALHFSSRHN KDIALVNLAN VLHRAHFSAD AAVVVHAALD DSDFFTSYYT ENSBTAP00000053799/1-1198 RALHFSSRHN KDIALVNLAN VLHRAHFSAD AAVVVHAALD DSDFFTSYYT 301 350 ENSTTRP00000011042/1-1097 LGNIYAMLGE YNHSVLCYDH ALQAKPGFEQ AIKRKHAVLC QQKLEQKLEA ENSP00000039989/1-1141 LGNIYAMLGE YNHSVLCYDH ALQARPGFEQ AIKRKHAVLC QQKLEQKLEA bmy_10491T0/1-606 LGNIYAMLGE YNHSVLCYDH ALQAKPGFEQ AIKRKHAVLC QQKLEQKLEA BACU008925/1-1198 LGNIYAMLGE YNHSVLCYDH ALQAKPGFEQ AIKRKHAVLC QQKLEQKLEA ENSBTAP00000053799/1-1198 LGNIYAMLGE YNHSVLCYDH ALQAKPGFEQ AIKRKHAVLC QQKLEQKLEA 351 400 ENSTTRP00000011042/1-1097 QHRSLQRTLN ELKEYQKQHD HYLRQQEILE KHKLIQEEQI LRNIIHETQM ENSP00000039989/1-1141 QHRSLQRTLN ELKEYQKQHD HYLRQQEILE KHKLIQEEQI LRNIIHETQM bmy_10491T0/1-606 QHRSLQRTLN ELKEYQKQHD HYLRQQEILE KHKLIQEEQI LRNIIHETQM BACU008925/1-1198 QHRSLQRTLN ELKEYQKQHD HYLRQQEILE KHKLIQEEQI LRNIIHETQM ENSBTAP00000053799/1-1198 QHRSLQRTLN ELKEYQKQHD HYLRQQEILE KHKLIQEEQI LRNIIHETQM 401 450 ENSTTRP00000011042/1-1097 AKEAQLGNHQ ICRLVNQQHS LHCQWDQPVR YHRGDIFENV DYVQFGEDSS ENSP00000039989/1-1141 AKEAQLGNHQ ICRLVNQQHS LHCQWDQPVR YHRGDIFENV DYVQFGEDSS bmy_10491T0/1-606 AKEAQLGNHQ ICRLVNQQHS LHCQWDQPVR YHRGDIFENV DYVQ------ BACU008925/1-1198 AKEAQLGNHQ ICRLVNQQHS LHCQWDQPVR YHRGDIFENV DYVQFGEDSS ENSBTAP00000053799/1-1198 AKEAQLGNHQ ICRLVNQQHS LHCQWDQPVR YHRGDIFENV DYVQFGEDSS 451 500 ENSTTRP00000011042/1-1097 TSSMMSVNFD VQANHSDISD LVKSSPIAHS VLWIWGRDSD AYRDKQHILW ENSP00000039989/1-1141 TSSMMSVNFD VQSNQSDIND SVKSSPVAHS ILWIWGRDSD AYRDKQHILW bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---DKQHILW BACU008925/1-1198 TSSMMSVNFD VQANQSDISD LVKSSPVAHS VLWIWGRDSD AYRDKQHILW ENSBTAP00000053799/1-1198 TSSMMSVNFD VQANQSDISD LVKSSPVAHS VLWIWGRDSD AYRDKQHILW 501 550 ENSTTRP00000011042/1-1097 PKRADCAESY PRVPVGGELP TYFLPPENKG LRIHELNSDD YASEEEAQTP ENSP00000039989/1-1141 PKRADCTESY PRVPVGGELP TYFLPPENKG LRIHELSSDD YSTEEEAQTP bmy_10491T0/1-606 PKRADCXESY PRVPVGGELP T--------- --IHELNSDD YSSEEEAQTP BACU008925/1-1198 PKRADCAESY PRVPVGGELP TYFLPPENKG LRIHELNSDD YSSEEEAQTP ENSBTAP00000053799/1-1198 PKRADCAESY PRVPIGGELP TYFLPPENKG LRIHELNSDD YSSEEEAQTP 551 600 ENSTTRP00000011042/1-1097 DCSITDIRKS QTLSYLVKEL EVRMDLKAKM PDDHARKILL SRINNYTIPE ENSP00000039989/1-1141 DCSITDFRKS HTLSYLVKEL EVRMDLKAKM PDDHARKILL SRINNYTIPE bmy_10491T0/1-606 DCSITDIRKS QTLSYLVKEL EVRMDLKAKM PDDHARKILL SRINNYTIPE BACU008925/1-1198 DCSITDIRKS QTLSYLVKEL EVRMDLKAKM PDDHARKILL SRINNYTIPE ENSBTAP00000053799/1-1198 DCSITDIRKS QTLSYLVKEL EVRMDLKAKM PDDHARKILL SRINNYTIPE 601 650 ENSTTRP00000011042/1-1097 EEIGSFLFHA INK------- ---------P NAPVWLILNE AGLYWRAVGN ENSP00000039989/1-1141 EEIGSFLFHA INK------- ---------P NAPIWLILNE AGLYWRAVGN bmy_10491T0/1-606 EEIGSFLFHA INKNEYCILV LTEVFGVFQP NAPVWLILNE AGLYWRAVGN BACU008925/1-1198 EEIGSFLFHA INK------- ---------P NAPVWLILNE AGLYWRAVGN ENSBTAP00000053799/1-1198 EEIGSFLFHA INK------- ---------P NAPVWLILNE AGLYWRAVGN 651 700 ENSTTRP00000011042/1-1097 STFAIACLQR ALNLAPLQYQ DVPLVNLANL LIHYGLHLDA TKLLLQALAI ENSP00000039989/1-1141 STFAIACLQR ALNLAPLQYQ DVPLVNLANL LIHYGLHLDA TKLLLQALAI bmy_10491T0/1-606 STFAIACLQR ALNLAPLQYQ DVPLVNLANL LIHYGLHLDA TKLLLQALAI BACU008925/1-1198 STFAIACLQR ALNLAPLQYQ DVPLVNLANL LIHYGLHLDA TKLLLQALAI ENSBTAP00000053799/1-1198 STFAIACLQR ALNLAPLQYQ DVPLVNLANL LIHYGLHLDA TKLLLQALAI 701 750 ENSTTRP00000011042/1-1097 NSSEPLTFLS LGNAYLALKN ISGALEAFRQ ALKLTTKCPE CENSLKLIRC ENSP00000039989/1-1141 NSSEPLTFLS LGNAYLALKN ISGALEAFRQ ALKLTTKCPE CENSLKLIRC bmy_10491T0/1-606 NSSEVFLY-- ---------- ---------- ---------- ---------- BACU008925/1-1198 NSSEPLTFLS LGNAYLALKN ISGALEAFRQ ALKLTTKCPE CENSLKLIRC ENSBTAP00000053799/1-1198 NSSEPLTFLS LGNAYLALKN ISGALEAFRQ ALKLTTKCPE CENSLKLIRC 751 800 ENSTTRP00000011042/1-1097 MQFYPFLYNI TSSVCSG--- ---------- ---------- ---------- ENSP00000039989/1-1141 MQFYPFLYNI TSSVCSG--- ---------- ---------- ---------- bmy_10491T0/1-606 -QHYSF---- ---------- ---------- ---------- ---------- BACU008925/1-1198 MQFYPFLYNI TSSVCSGNCH AKTLDNSHDK QKYFDNSQSL DAAEEEPSET ENSBTAP00000053799/1-1198 MQFYPFLYNI TSSVCSGNCH AKTLDNSHDK QKYFDKSQSL DAAEEEPSEA 801 850 ENSTTRP00000011042/1-1097 ---------- ---------- ----TVVEES NGSDEMENSD ETKMSEKILA ENSP00000039989/1-1141 ---------- ---------- ----TVVEES NGSDEMENSD ETKMSEEILA bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 GTEEDPVLSV ENSGRGSDVL RLESTVVEES NGSDEMENSD ETKMSEEILA ENSBTAP00000053799/1-1198 GTEEDPVLSV QDSGRDSDVL RLESTVVEES NGSDEMENSD ETKMSEEILA 851 900 ENSTTRP00000011042/1-1097 LVDEFQQAWP LEXXGG---- ---------- ---------- ---------- ENSP00000039989/1-1141 LVDEFQQAWP LEGFGGALEM KGRRLDLQGI RVLKKGPQDG VARSSCYGDC bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 LVDEFQQAWP LEGFGGALEM KGRRLDLQGI RVLKKGPQDG VARSSCYGDC ENSBTAP00000053799/1-1198 LVDEFQQAWP LEGFGGALEM KGRRLDLQGI RVLKKGPQDG IARSSCYGDC 901 950 ENSTTRP00000011042/1-1097 ---------- ITFQVKRVKK PKGDHKKTPG KKVELNQAEN VHRNQANLEI ENSP00000039989/1-1141 RSEDDEATEW ITFQVKRVKK PKGDHKKTPG KKVETGQIEN GHRYQANLEI bmy_10491T0/1-606 ---------- ---------- ------KDAG KE-------- ---------- BACU008925/1-1198 RSEDDEATEW ITFQVKRVKK PKGDHKKNPG KKVESNQAEN VHRNQANLEI ENSBTAP00000053799/1-1198 RSEDDEATEW ITFQVKRVKK PKGDHKKTSG KKVESSQTED VHRNRASLEI 951 1000 ENSTTRP00000011042/1-1097 TGPKVASPGP QXXKRDYQSL GWPSPDECLK LRWVELTAIV STWLAVSSKN ENSP00000039989/1-1141 TGPKVASPGP QGKKRDYQRL GWPSPDECLK LRWVELTAIV STWLAVSSKN bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 TGPKVASPGP QGKKRDYQSL GWPSPDECLK LRWVELTAIV STWLAVSSKN ENSBTAP00000053799/1-1198 TGPKVASPGP QGKKRDYQSL GWPSPDECLK LRWVELTAIV STWLAVSSKN 1001 1050 ENSTTRP00000011042/1-1097 IDITEHIDFA TPIQQPAMEP VCNGNLPTSM HTLDHLQGVS NRASLHYTGE ENSP00000039989/1-1141 IDITEHIDFA TPIQQPAMEP LCNGNLPTSM HTLDHLHGVS NRASLHYTGE bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 IDITEHIDFA TPIQQPAMEP VCNGNLPTSM HTLDHLQGVS NRASLHYTGE ENSBTAP00000053799/1-1198 IDITEHIDFA TPIQQPAMEP VCNGNLPTSM HTLDHLQGVS NRASLHYTGE 1051 1100 ENSTTRP00000011042/1-1097 SQLTEVLQNL GKDQYPQQSL EQIGTRIAKV LEKNQTSWVL SSMAALYWRV ENSP00000039989/1-1141 SQLTEVLQNL GKDQYPQQSL EQIGTRIAKV LEKNQTSWVL SSMAALYWRV bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 SQLTEVLQNL GKDQYPQQSL EQIGTRIAKV LEKNQTSWVL SSMAALYWRV ENSBTAP00000053799/1-1198 SQLTEVLQNL GKDQYPQQSL EQIGTRIAKV LEKNQTSWVL SSMAALYWRV 1101 1150 ENSTTRP00000011042/1-1097 KGQGKKAIDC LRQALHYAPH QMKDVPLISL ANILHNAKLW NDAVIVATMA ENSP00000039989/1-1141 KGQGKKAIDC LRQALHYAPH QMKDVPLISL ANILHNAKLW NDAVIVATMA bmy_10491T0/1-606 ---------- ---------- ---------- -NIID----- ---------- BACU008925/1-1198 KGQGKKAIDC LRQALHYAPH QMKDVPLISL ANILHNAKLW NDAVIVATMA ENSBTAP00000053799/1-1198 KGQGKKAIDC LRQALHYAPH QMKDVPLISL ANILHNAKLW NDAVIVATMA 1151 1200 ENSTTRP00000011042/1-1097 VEIAPHFAVN HFTLGNVYVA MEEFEKALVW YESTLKLQPE FVPAKNRIQT ENSP00000039989/1-1141 VEIAPHFAVN HFTLGNVYVA MEEFEKALVW YESTLKLQPE FVPAKNRIQT bmy_10491T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU008925/1-1198 VEIAPHFAVN HFTLGNVYVA MEEFEKALVW YESTLKLQPE FVPAKNRIQT ENSBTAP00000053799/1-1198 VEIAPHFAVN HFTLGNVYVA MEEFEKALVW YESTLKLQPE FVPAKNRIQT 1201 1250 ENSTTRP00000011042/1-1097 IQCHLILKKG RRSP ENSP00000039989/1-1141 IQCHLMLKKG RRSP bmy_10491T0/1-606 ---------- ---- BACU008925/1-1198 IQCHLILKKG RRSP ENSBTAP00000053799/1-1198 IQCHLMLKKG RRSP